Janusz Bujnicki | Academic Influence

Janusz Bujnicki's AcademicInfluence.com Rankings

Janusz Bujnicki

Biology

#3547

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#5410

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Bioinformatics

#71

World Rank

#72

Historical Rank

biology Degrees

Janusz Bujnicki

Engineering

#4287

World Rank

#5475

Historical Rank

Bioengineering

#50

World Rank

#52

Historical Rank

engineering Degrees

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Biology
Engineering

Janusz Bujnicki's Degrees

PhD Biological Sciences University of Warsaw

Why Is Janusz Bujnicki Influential?

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According to Wikipedia, Janusz Marek Bujnicki is a Polish biologist specializing in molecular biology and bioinformatics, professor of biological sciences, head of the Laboratory of Bioinformatics and Protein Engineering at the International Institute of Molecular and Cell Biology in Warsaw and a research group at the Laboratory of Bioinformatics at the Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University in Poznań.

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Janusz Bujnicki's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

MODOMICS: a database of RNA modification pathways. 2017 update (2017) (1192)
MODOMICS: a database of RNA modification pathways (2005) (1087)
MODOMICS: a database of RNA modification pathways—2013 update (2012) (917)
Transcriptome Profile of Human Colorectal Adenomas (2007) (465)
GeneSilico protein structure prediction meta-server (2003) (424)
Pcons: A neural‐network–based consensus predictor that improves fold recognition (2001) (328)
MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins (2012) (313)
IAPs contain an evolutionarily conserved ubiquitin-binding domain that regulates NF-κB as well as cell survival and oncogenesis (2008) (269)
SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction (2015) (257)
ModeRNA: a tool for comparative modeling of RNA 3D structure (2011) (237)
RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction. (2012) (235)
Structure prediction meta server (2001) (223)
The YTH Domain Is a Novel RNA Binding Domain* (2010) (207)
MODOMICS: a database of RNA modification pathways. 2008 update (2008) (194)
Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB (2003) (190)
Streptococcal Scl1 and Scl2 Proteins Form Collagen-like Triple Helices* (2002) (182)
MetaMQAP: A meta-server for the quality assessment of protein models (2008) (180)
Structure Prediction and Phylogenetic Analysis of a Functionally Diverse Family of Proteins Homologous to the MT-A70 Subunit of the Human mRNA:m6A Methyltransferase (2002) (175)
A “FRankenstein's monster” approach to comparative modeling: Merging the finest fragments of Fold‐Recognition models and iterative model refinement aided by 3D structure evaluation (2003) (166)
NPDock: a web server for protein–nucleic acid docking (2015) (166)
RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures (2015) (165)
RNAcentral: a hub of information for non-coding RNA sequences (2018) (164)
Trm7p catalyses the formation of two 2′‐O‐methylriboses in yeast tRNA anticodon loop (2002) (163)
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme. (2017) (158)
Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases (2007) (153)
ORFeus: detection of distant homology using sequence profiles and predicted secondary structure (2003) (150)
Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements (2020) (145)
LiveBench‐1: Continuous benchmarking of protein structure prediction servers (2001) (137)
Structure of a multipartite protein-protein interaction domain in splicing factor prp8 and its link to retinitis pigmentosa. (2007) (131)
Distribution and frequencies of post-transcriptional modifications in tRNAs (2014) (128)
A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase. (2004) (122)
Generalized protein structure prediction based on combination of fold‐recognition with de novo folding and evaluation of models (2005) (115)
The RNase H-like superfamily: new members, comparative structural analysis and evolutionary classification (2014) (115)
2′-O-ribose methylation of cap2 in human: function and evolution in a horizontally mobile family (2011) (111)
Trm11p and Trm112p Are both Required for the Formation of 2-Methylguanosine at Position 10 in Yeast tRNA (2005) (111)
Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 2'-O-methyltransferases. (2003) (111)
RNAcentral: an international database of ncRNA sequences (2014) (108)
Phylogenomic analysis of the GIY-YIG nuclease superfamily (2006) (107)
LiveBench‐2: Large‐scale automated evaluation of protein structure prediction servers (2001) (104)
SimRNAweb: a web server for RNA 3D structure modeling with optional restraints (2016) (104)
Structural and functional characterization of mitochondrial EndoG, a sugar non-specific nuclease which plays an important role during apoptosis. (2004) (103)
Bud23 Methylates G1575 of 18S rRNA and Is Required for Efficient Nuclear Export of Pre-40S Subunits (2008) (102)
Computational methods for prediction of protein-RNA interactions. (2012) (102)
Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses (2008) (102)
Integrating ELF4 into the circadian system through combined structural and functional studies (2009) (97)
RNAcentral: a comprehensive database of non-coding RNA sequences (2016) (95)
Cloning and characterization of tRNA (m1A58) methyltransferase (TrmI) from Thermus thermophilus HB27, a protein required for cell growth at extreme temperatures. (2003) (94)
DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking (2011) (93)
Sequence-structure-function studies of tRNA:m5C methyltransferase Trm4p and its relationship to DNA:m5C and RNA:m5U methyltransferases. (2004) (91)
The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function (2005) (90)
Common design principles in the spliceosomal RNA helicase Brr2 and in the Hel308 DNA helicase. (2009) (89)
Type II restriction endonuclease R.KpnI is a member of the HNH nuclease superfamily. (2004) (89)
Insights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria (2009) (83)
Phylogenetic analysis of haloalkane dehalogenases (2007) (83)
STAT1 as a novel therapeutical target in pro-atherogenic signal integration of IFNγ, TLR4 and IL-6 in vascular disease. (2011) (83)
Matching tRNA modifications in humans to their known and predicted enzymes (2019) (82)
Phylogeny of the Restriction Endonuclease-Like Superfamily Inferred from Comparison of Protein Structures (2000) (82)
MRM2 encodes a novel yeast mitochondrial 21S rRNA methyltransferase (2002) (80)
RNA and protein 3D structure modeling: similarities and differences (2011) (79)
RNAcentral: A vision for an international database of RNA sequences. (2011) (76)
The yggH Gene of Escherichia coli Encodes a tRNA (m7G46) Methyltransferase (2003) (76)
Protein‐Structure Prediction by Recombination of Fragments (2006) (76)
Magnesium-binding architectures in RNA crystal structures: validation, binding preferences, classification and motif detection (2015) (75)
The structure of M.EcoKI Type I DNA methyltransferase with a DNA mimic antirestriction protein (2008) (75)
Structural analysis of human 2′-O-ribose methyltransferases involved in mRNA cap structure formation (2014) (75)
Intrinsic Disorder in the Human Spliceosomal Proteome (2012) (74)
Structure and Evolutionary Origin of Ca2+-Dependent Herring Type II Antifreeze Protein (2007) (74)
Understanding the evolution of restriction-modification systems: clues from sequence and structure comparisons. (2001) (73)
Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5′-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi (2005) (72)
In silico identification, structure prediction and phylogenetic analysis of the 2'-O-ribose (cap 1) methyltransferase domain in the large structural protein of ssRNA negative-strand viruses. (2002) (72)
Comparison of protein structures reveals monophyletic origin of AdoMet-dependent methyltransferase family and mechanistic convergence rather than recent differentiation of N4-cytosine and N6-adenine DNA methylation (1999) (71)
YbeA is the m3Psi methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA. (2008) (71)
Curcumin induces caspase-3-dependent apoptotic pathway but inhibits DNA fragmentation factor 40/caspase-activated DNase endonuclease in human Jurkat cells (2006) (71)
Sequence permutations in the molecular evolution of DNA methyltransferases (2002) (71)
N2-Methylation of Guanosine at Position 10 in tRNA Is Catalyzed by a THUMP Domain-containing, S-Adenosylmethionine-dependent Methyltransferase, Conserved in Archaea and Eukaryota*[boxs] (2004) (71)
FRankenstein becomes a cyborg: The automatic recombination and realignment of fold recognition models in CASP6 (2005) (70)
RNA Bricks—a database of RNA 3D motifs and their interactions (2013) (68)
REPAIRtoire—a database of DNA repair pathways (2010) (66)
The PMS2 subunit of human MutLalpha contains a metal ion binding domain of the iron-dependent repressor protein family. (2008) (65)
MODOMICS: a database of RNA modification pathways. 2021 update (2021) (63)
YgdE is the 2′‐O‐ribose methyltransferase RlmM specific for nucleotide C2498 in bacterial 23S rRNA (2009) (62)
CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction (2014) (62)
COLORADO3D, a web server for the visual analysis of protein structures (2004) (62)
Polyphyletic evolution of type II restriction enzymes revisited: two independent sources of second-hand folds revealed. (2001) (62)
EXOG, a novel paralog of Endonuclease G in higher eukaryotes (2008) (62)
Evolutionary Relationship between Different Subgroups of Restriction Endonucleases* (2002) (61)
Analysis of the quaternary structure of the MutL C-terminal domain. (2005) (60)
Anti-HIV-1 activity of 3-deaza-adenosine analogs. Inhibition of S-adenosylhomocysteine hydrolase and nucleotide congeners. (2003) (60)
Cooperative binding of the hnRNP K three KH domains to mRNA targets (2004) (59)
RNA methyltransferases involved in 5′ cap biosynthesis (2014) (58)
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers (2020) (58)
Grouping together highly diverged PD-(D/E)XK nucleases and identification of novel superfamily members using structure-guided alignment of sequence profiles. (2001) (58)
Molecular phylogenetics and comparative modeling of HEN1, a methyltransferase involved in plant microRNA biogenesis (2006) (57)
YccW is the m5C methyltransferase specific for 23S rRNA nucleotide 1962. (2008) (56)
Identification of Lynch syndrome mutations in the MLH1–PMS2 interface that disturb dimerization and mismatch repair (2010) (56)
An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies (2015) (56)
LigandRNA: computational predictor of RNA–ligand interactions (2013) (54)
Characterization of new DsbB-like thiol-oxidoreductases of Campylobacter jejuni and Helicobacter pylori and classification of the DsbB family based on phylogenomic, structural and functional criteria. (2005) (54)
Structure and operation of the DNA-translocating type I DNA restriction enzymes. (2012) (54)
Crystallographic and bioinformatic studies on restriction endonucleases: inference of evolutionary relationships in the "midnight zone" of homology. (2003) (53)
Molecular evolution of DNA-(cytosine-N4) methyltransferases: evidence for their polyphyletic origin. (1999) (53)
ModeRNA server: an online tool for modeling RNA 3D structures (2011) (53)
The Yeast Arr4p ATPase Binds the Chloride Transporter Gef1p When Copper Is Available in the Cytosol* (2006) (52)
PspGI, a type II restriction endonuclease from the extreme thermophile Pyrococcus sp.: structural and functional studies to investigate an evolutionary relationship with several mesophilic restriction enzymes. (2003) (52)
Binding of the low‐density lipoprotein by streptococcal collagen‐like protein Scl1 of Streptococcus pyogenes (2006) (52)
Novel protein fold discovered in the PabI family of restriction enzymes (2007) (51)
Sequence-structure-function relationships of Tgs1, the yeast snRNA/snoRNA cap hypermethylase. (2003) (51)
Cell death upon epigenetic genome methylation: a novel function of methyl-specific deoxyribonucleases (2008) (51)
CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction (2013) (49)
Occurrence and stability of lone pair–π stacking interactions between ribose and nucleobases in functional RNAs (2017) (48)
The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferase (2006) (47)
Crystal structure and mechanism of action of the N6-methyladenine-dependent type IIM restriction endonuclease R.DpnI (2012) (47)
Coarse-grained modeling of RNA 3D structure. (2016) (47)
The Structure of Sucrose Phosphate Synthase from Halothermothrix orenii Reveals Its Mechanism of Action and Binding Mode[W][OA] (2008) (47)
Identification of a bifunctional enzyme MnmC involved in the biosynthesis of a hypermodified uridine in the wobble position of tRNA. (2004) (46)
Virtual screening strategies in drug design - methods and applications (2011) (46)
Editing of hnRNP K protein mRNA in colorectal adenocarcinoma and surrounding mucosa (2006) (45)
Reassignment of specificities of two cap methyltransferase domains in the reovirus lambda2 protein (2001) (45)
The architecture of the Schizosaccharomyces pombe CCR4-NOT complex (2016) (45)
Computational modeling of RNA 3D structures, with the aid of experimental restraints (2014) (44)
Structural bioinformatics of the human spliceosomal proteome (2012) (43)
Structural bases of peptidoglycan recognition by lysostaphin SH3b domain (2019) (43)
Statins impair glucose uptake in human cells (2014) (42)
Identification and Classification of bcl Genes and Proteins of Bacillus cereus Group Organisms and Their Application in Bacillus anthracis Detection and Fingerprinting (2009) (42)
New archaeal methyltransferases forming 1-methyladenosine or 1-methyladenosine and 1-methylguanosine at position 9 of tRNA (2010) (42)
Structural analysis of monomeric retroviral reverse transcriptase in complex with an RNA/DNA hybrid (2013) (41)
Phylogenomic analysis of 16S rRNA:(guanine‐N2) methyltransferases suggests new family members and reveals highly conserved motifs and a domain structure similar to other nucleic acid amino‐methyltransferases (2000) (41)
SMN-assisted assembly of snRNP-specific Sm cores in trypanosomes. (2009) (41)
Identification of a new family of putative PD-(D/E)XK nucleases with unusual phylogenomic distribution and a new type of the active site (2005) (41)
Computational modeling of RNA 3D structures and interactions. (2016) (40)
Structural bioinformatics analysis of enzymes involved in the biosynthesis pathway of the hypermodified nucleoside ms2io6A37 in tRNA (2007) (40)
Alanine-scanning mutagenesis of the predicted rRNA-binding domain of ErmC' redefines the substrate-binding site and suggests a model for protein-RNA interactions. (2003) (40)
Structure, evolution, and inhibitor interaction of S‐adenosyl‐L‐homocysteine hydrolase from Plasmodium falciparum (2003) (39)
Angiogenesis Inhibitors Specific for Methionine Aminopeptidase 2 as Drugs for Malaria and Leishmaniasis (2002) (39)
Crystal structure of Bacillus subtilis TrmB, the tRNA (m7G46) methyltransferase (2006) (39)
Co‐evolution‐driven switch of J‐protein specificity towards an Hsp70 partner (2010) (38)
In silico analysis of the tRNA:m1A58 methyltransferase family: homology‐based fold prediction and identification of new members from Eubacteria and Archaea (2001) (38)
Novel non-specific DNA adenine methyltransferases (2011) (38)
Specificity Changes in the Evolution of Type II Restriction Endonucleases (2005) (38)
Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily (2007) (38)
The Herpesvirus Alkaline Exonuclease Belongs to the Restriction Endonuclease PD-(D/E)XK Superfamily: Insight from Molecular Modeling and Phylogenetic Analysis (2001) (38)
Predicting Atomic Details of the Unfolding Pathway for YibK, a Knotted Protein from the SPOUT Superfamily (2010) (38)
Structural basis for the methylation of G1405 in 16S rRNA by aminoglycoside resistance methyltransferase Sgm from an antibiotic producer: a diversity of active sites in m7G methyltransferases (2010) (38)
GDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function (2015) (37)
Sequence–structure–function relationships of a tRNA (m7G46) methyltransferase studied by homology modeling and site‐directed mutagenesis (2005) (37)
Structural studies of RNA-protein complexes: A hybrid approach involving hydrodynamics, scattering, and computational methods. (2017) (37)
ClaRNA: a classifier of contacts in RNA 3D structures based on a comparative analysis of various classification schemes (2014) (37)
Sterol methyltransferase: functional analysis of highly conserved residues by site-directed mutagenesis. (2004) (37)
Mutational analysis defines the roles of conserved amino acid residues in the predicted catalytic pocket of the rRNA:m6A methyltransferase ErmC'. (2003) (36)
Crystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life (2012) (36)
Crystal structure of the Escherichia coli 23S rRNA:m5C methyltransferase RlmI (YccW) reveals evolutionary links between RNA modification enzymes. (2008) (35)
Identification of a PD-(D/E)XK-like domain with a novel configuration of the endonuclease active site in the methyl-directed restriction enzyme Mrr and its homologs. (2001) (35)
A novel homozygous p.Arg527Leu LMNA mutation in two unrelated Egyptian families causes overlapping mandibuloacral dysplasia and progeria syndrome (2012) (34)
Prediction of protein structures, functions, and interactions (2008) (34)
RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited – bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure (2002) (33)
RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools (2019) (33)
Helicobacter pylori protein oxidation influences the colonization process. (2006) (32)
Functional specialization of domains tandemly duplicated within 16S rRNA methyltransferase RsmC (2007) (32)
I-Ssp6803I: the first homing endonuclease from the PD-(D/E)XK superfamily exhibits an unusual mode of DNA recognition (2007) (32)
Identification of a new subfamily of HNH nucleases and experimental characterization of a representative member, HphI restriction endonuclease (2006) (32)
Molecular Phylogenetics of Restriction Endonucleases (2004) (32)
MetalionRNA: computational predictor of metal-binding sites in RNA structures (2011) (32)
Conserved amino acids in each subunit of the heteroligomeric tRNA m1A58 Mtase from Saccharomyces cerevisiae contribute to tRNA binding (2007) (32)
Biochemical Characterization and Validation of a Catalytic Site of a Highly Thermostable Ts2631 Endolysin from the Thermus scotoductus Phage vB_Tsc2631 (2015) (32)
Evaluation of molecular models for the affinity maturation of antibodies: roles of cytosine deamination by AID and DNA repair. (2006) (31)
Molecular evolution of dihydrouridine synthases (2012) (31)
QRNAS: software tool for refinement of nucleic acid structures (2019) (31)
Novel Highly Thermostable Endolysin from Thermus scotoductus MAT2119 Bacteriophage Ph2119 with Amino Acid Sequence Similarity to Eukaryotic Peptidoglycan Recognition Proteins (2013) (31)
Complete Cap 4 Formation Is Not Required for Viability in Trypanosoma brucei (2006) (31)
PROTMAP2D: visualization, comparison and analysis of 2D maps of protein structure (2007) (30)
Corrigendum: ''RNAcentral : a hub of information for non-coding RNA sequences'' [Nucleic acids research, 47 (2019) D1, p. D221-D229] (2019) (30)
Computational modeling of RNA 3D structure based on experimental data (2019) (30)
Angiogenesis inhibitors specific for methionine aminopeptidase 2 as drugs for malaria and leishmaniasis. (2002) (30)
HsdR Subunit of the Type I Restriction-Modification Enzyme EcoR124I: Biophysical Characterisation and Structural Modelling (2008) (30)
Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors (2009) (30)
Computational modeling of protein-RNA complex structures. (2014) (29)
Bioinformatics Tools and Benchmarks for Computational Docking and 3D Structure Prediction of RNA-Protein Complexes (2018) (29)
mRNA:guanine-N7 cap methyltransferases: identification of novel members of the family, evolutionary analysis, homology modeling, and analysis of sequence-structure-function relationships (2001) (29)
Is the HemK Family of Putative S‐Adenosylmethionine‐Dependent Methyltransferases a “Missing” zeta Subfamily of Adenine Methyltransferases? A Hypothesis (1999) (29)
MODOMICS: a database of RNA modification pathways, update 2008 (2009) (28)
Characterization of prmt7α and β isozymes from Chinese hamster cells sensitive and resistant to topoisomerase II inhibitors (2006) (28)
MetaLocGramN: A meta-predictor of protein subcellular localization for Gram-negative bacteria. (2012) (27)
The YqfN protein of Bacillus subtilis is the tRNA: m1A22 methyltransferase (TrmK) (2008) (27)
THUMP from archaeal tRNA:m22G10 methyltransferase, a genuine autonomously folding domain (2006) (26)
Structural and functional insights into tRNA binding and adenosine N1-methylation by an archaeal Trm10 homologue (2015) (26)
Mva1269I: A Monomeric Type IIS Restriction Endonuclease from Micrococcus Varians with Two EcoRI- and FokI-like Catalytic Domains* (2005) (26)
RNArchitecture: a database and a classification system of RNA families, with a focus on structural information (2017) (26)
Structural model for the multisubunit Type IC restriction–modification DNA methyltransferase M.EcoR124I in complex with DNA (2006) (26)
The Signature of the Five-Stranded vRRM Fold Defined by Functional, Structural and Computational Analysis of the hnRNP L Protein. (2015) (26)
Virtual Screening and Experimental Verification to Identify Potential Inhibitors of the ErmC Methyltransferase Responsible for Bacterial Resistance against Macrolide Antibiotics (2008) (26)
Structural basis for the methylation of A1408 in 16S rRNA by a panaminoglycoside resistance methyltransferase NpmA from a clinical isolate and analysis of the NpmA interactions with the 30S ribosomal subunit (2010) (26)
Homology Modeling of the CG-specific DNA Methyltransferase SssI and its Complexes with DNA and AdoHcy (2004) (26)
Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition (2018) (25)
A composite double-/single-stranded RNA-binding region in protein Prp3 supports tri-snRNP stability and splicing (2015) (25)
Human lysosomal DNase IIα contains two requisite PLD‐signature (HxK) motifs: Evidence for a pseudodimeric structure of the active enzyme species (2006) (24)
Related bifunctional restriction endonuclease-methyltransferase triplets: TspDTI, Tth111II/TthHB27I and TsoI with distinct specificities (2012) (24)
Identification of a single HNH active site in type IIS restriction endonuclease Eco31I. (2007) (24)
Fold-recognition detects an error in the Protein Data Bank (2002) (24)
A homology model of restriction endonuclease SfiI in complex with DNA (2005) (24)
Modeling and experimental analyses reveal a two-domain structure and amino acids important for the activity of aminoglycoside resistance methyltransferase Sgm. (2008) (23)
Cloning and analysis of a bifunctional methyltransferase/restriction endonuclease TspGWI, the prototype of a Thermus sp. enzyme family (2009) (23)
RNAlyzer—novel approach for quality analysis of RNA structural models (2013) (23)
Malaria: therapy, genes and vaccines. (2006) (23)
Experimental evidence for a ββα-Me-finger nuclease motif to represent the active site of the caspase-activated DNase (2003) (23)
The 2′-O-Ribose Methyltransferase for Cap 1 of Spliced Leader RNA and U1 Small Nuclear RNA in Trypanosoma brucei (2007) (22)
Topological measurement of an A-tract bend angle: comparison of the bent and straightened states. (2003) (22)
Structural basis of the methylation specificity of R.DpnI (2014) (22)
Probabilistic cross‐link analysis and experiment planning for high‐throughput elucidation of protein structure (2004) (22)
Crohn's disease risk alleles on the NOD2 locus have been maintained by natural selection on standing variation. (2012) (22)
The crystal structure of Escherichia coli spermidine synthase SpeE reveals a unique substrate-binding pocket. (2010) (22)
Atomic model of the 5‐methylcytosine‐specific restriction enzyme McrA reveals an atypical zinc finger and structural similarity to ββαMe endonucleases (2000) (21)
Evidence for an evolutionary antagonism between Mrr and Type III modification systems (2011) (21)
Crystal structure of a fructokinase homolog from Halothermothrix orenii. (2010) (21)
Characterization of prmt7alpha and beta isozymes from Chinese hamster cells sensitive and resistant to topoisomerase II inhibitors. (2006) (21)
Sequence–structure–function analysis of the bifunctional enzyme MnmC that catalyses the last two steps in the biosynthesis of hypermodified nucleoside mnm5s2U in tRNA (2008) (20)
RNA tertiary structure prediction with ModeRNA (2011) (20)
Bacteriophage Mu Mom protein responsible for DNA modification is a new member of the acyltransferase superfamily (2008) (20)
Sequence-dependent enhancement of hydrolytic deamination of cytosines in DNA by the restriction enzyme PspGI (2006) (20)
S6:S18 ribosomal protein complex interacts with a structural motif present in its own mRNA (2013) (20)
Sequence-specific cleavage of dsRNA by Mini-III RNase (2015) (20)
FILTREST3D: discrimination of structural models using restraints from experimental data (2010) (20)
Statins impair glucose uptake in tumor cells. (2012) (20)
Solution conformation of adenovirus virus associated RNA-I and its interaction with PKR. (2014) (20)
Protein-Structure Prediction by Recombination of Fragments (2006) (20)
Medaka: a promising model animal for comparative population genomics (2009) (19)
Inference of relationships in the ‘twilight zone’ of homology using a combination of bioinformatics and site-directed mutagenesis: a case study of restriction endonucleases Bsp6I and PvuII (2005) (19)
Sequence-specific cleavage of the RNA strand in DNA–RNA hybrids by the fusion of ribonuclease H with a zinc finger (2012) (19)
Genome-wide mapping of therapeutically-relevant SARS-CoV-2 RNA structures (2020) (19)
Three-dimensional modeling of the I-TevI homing endonuclease catalytic domain, a GIY-YIG superfamily member, using NMR restraints and Monte Carlo dynamics. (2001) (19)
Unusual evolutionary history of the tRNA splicing endonuclease EndA: Relationship to the LAGLIDADG and PD‐(D/E)XK deoxyribonucleases (2001) (19)
Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site (2008) (19)
RNA 3D structure prediction guided by independent folding of homologous sequences (2019) (19)
SURF’s UP! — Protein classification by surface comparisons (2007) (18)
Conformation of a plasmid replication initiator protein affects its proteolysis by ClpXP system (2009) (18)
Template-Based and Template-Free Modeling of RNA 3D Structure: Inspirations from Protein Structure Modeling (2012) (18)
A Single Zinc Ion Is Sufficient for an Active Trypanosoma brucei tRNA Editing Deaminase* (2011) (18)
AnnapuRNA: A scoring function for predicting RNA-small molecule binding poses (2021) (18)
Functional Analysis of MmeI from Methanol Utilizer Methylophilus methylotrophus, a Subtype IIC Restriction-Modification Enzyme Related to Type I Enzymes (2008) (18)
The TbMTr1 Spliced Leader RNA Cap 1 2 ′-O-Ribose Methyltransferase from Trypanosoma brucei Acts with Substrate Specificity* (2008) (18)
Bioinformatics-Guided Identification and Experimental Characterization of Novel RNA Methyltransferas (2008) (18)
Positioning Europe for the EPITRANSCRIPTOMICS challenge (2018) (18)
Defining the crucial domain and amino acid residues in bacterial Lon protease for DNA binding and processing of DNA-interacting substrates (2017) (18)
Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes (2015) (17)
Characterization of the cofactor-binding site in the SPOUT-fold methyltransferases by computational docking of S-adenosylmethionine to three crystal structures (2003) (17)
A theoretical model of restriction endonuclease NlaIV in complex with DNA, predicted by fold recognition and validated by site-directed mutagenesis and circular dichroism spectroscopy. (2005) (17)
Characterization of the termini of the West Nile virus genome and their interactions with the small isoform of the 2' 5'-oligoadenylate synthetase family. (2015) (17)
RNAmap2D – calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures (2012) (16)
A toolbox for developing bioinformatics software (2012) (16)
Geometric Analysis of Cross-Linkability for Protein Fold Discrimination (2003) (16)
Prediction of a common fold for all four subunits of the yeast tRNA splicing endonuclease: implications for the evolution of the EndA/Sen family (2000) (16)
A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI) (2010) (15)
The open reading frame TTC1157 of Thermus thermophilus HB27 encodes the methyltransferase forming N²-methylguanosine at position 6 in tRNA. (2012) (15)
Identification of base-specific contacts in protein-DNA complexes by photocrosslinking and mass spectrometry: a case study using the restriction endonuclease SsoII. (2005) (15)
A model of restriction endonuclease MvaI in complex with DNA: A template for interpretation of experimental data and a guide for specificity engineering (2007) (15)
Molecular phylogenetics of DNA 5mC-methyltransferases. (1999) (14)
RNA 3D Structure Modeling by Combination of Template-Based Method ModeRNA, Template-Free Folding with SimRNA, and Refinement with QRNAS. (2016) (14)
Impact of the structural integrity of the three-way junction of adenovirus VAI RNA on PKR inhibition (2017) (14)
Cloning of enterohemorrhagic Escherichia coli phage VT-2 dam methyltransferase. (2001) (14)
Predicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecA. (2008) (14)
RNAcentral: a hub of information for non-coding RNA sequences (2018) (14)
Casein kinases phosphorylate multiple residues spanning the entire hnRNP K length. (2006) (14)
Bioinformatic analyses of the tRNA: (guanine 26, N2,N2)-dimethyltransferase (Trm1) family. (2002) (13)
Sequence analysis and structure prediction of aminoglycoside-resistance 16S rRNA:m7G methyltransferases. (2001) (13)
Cloning of the Haemophilus influenzae Dam methyltransferase and analysis of its relationship to the Dam methyltransferase encoded by the HP1 phage. (2001) (13)
Computational Methods for Protein Structure Prediction and Fold Recognition (2008) (13)
Mutational analysis and a structural model of methyl-directed restriction enzyme Mrr. (2008) (13)
A model of structure and action of Sau3AI restriction endonuclease that comprises two MutH-like endonuclease domains within a single polypeptide. (2001) (13)
STRUCLA: a WWW meta-server for protein structure comparison and evolutionary classification (2003) (12)
‘Meta’Approaches to Protein Structure Prediction (2008) (12)
Functional analysis of amino acid residues at the dimerisation interface of KpnI DNA methyltransferase (2006) (12)
DNAmoreDB, a database of DNAzymes (2020) (12)
Loss of Conserved Noncoding RNAs in Genomes of Bacterial Endosymbionts (2016) (12)
Human RNA cap1 methyltransferase CMTr1 cooperates with RNA helicase DHX15 to modify RNAs with highly structured 5′ termini (2018) (12)
tRNAmodpred: A computational method for predicting posttranscriptional modifications in tRNAs. (2016) (12)
Sequence analysis and structure prediction of 23S rRNA:m1G methyltransferases reveals a conserved core augmented with a putative Zn-binding domain in the N-terminus and family-specific elaborations in the C-terminus. (2002) (11)
RNApathwaysDB—a database of RNA maturation and decay pathways (2012) (11)
Databases and Bioinformatics Tools for the Study of DNA Repair (2011) (11)
Genome-wide survey of codons under diversifying selection in a highly recombining bacterial species, Helicobacter pylori (2016) (11)
DNase II is a member of the phospholipase D superfamily (2005) (11)
Designability landscape reveals sequence features that define axial helix rotation in four-helical homo-oligomeric antiparallel coiled-coil structures. (2014) (11)
The hppA gene of Helicobacter pylori encodes the class C acid phosphatase precursor (2002) (11)
Structural and degradative aspects of ornithine decarboxylase antizyme inhibitor 2 (2014) (11)
Cloning of the Dam methyltransferase gene from Haemophilus influenzae bacteriophage HP1. (1999) (11)
Effect of substrate features and mutagenesis of active site tyrosine residues on the reaction course catalysed by Trypanosoma brucei sterol C-24-methyltransferase. (2011) (11)
Modeling of ribonucleic acid–ligand interactions (2015) (11)
Prediction of a novel RNA 2'-O-ribose methyltransferase subfamily encoded by the Escherichia coli YgdE open reading frame and its orthologs. (2000) (10)
Functional and Bioinformatics Analysis of Two Campylobacter jejuni Homologs of the Thiol-Disulfide Oxidoreductase, DsbA (2014) (10)
QA-RecombineIt: a server for quality assessment and recombination of protein models (2013) (10)
Computational methods for prediction of RNA interactions with metal ions and small organic ligands. (2015) (10)
Theoretical model of restriction endonuclease HpaI in complex with DNA, predicted by fold recognition and validated by site‐directed mutagenesis (2006) (10)
Identification of a Missing Sequence and Functionally Important Residues of 16S rRNA:m1A1408 Methyltransferase KamB that Causes Bacterial Resistance to Aminoglycoside Antibiotics (2007) (10)
Modeling of Protein-RNA Complex Structures Using Computational Docking Methods. (2016) (10)
Errors in the D. radiodurans large ribosomal subunit structure detected by protein fold‐recognition and structure validation tools (2002) (10)
Physiological truncation and domain organization of a novel uracil‐DNA‐degrading factor (2010) (10)
Is AID a monomer in solution? (2008) (9)
Delineation of structural domains and identification of functionally important residues in DNA repair enzyme exonuclease VII (2012) (9)
Modeling of Three-Dimensional RNA Structures Using SimRNA. (2020) (9)
A combined structural and biochemical approach reveals translocation and stalling of UvrB on the DNA lesion as a mechanism of damage verification in bacterial nucleotide excision repair. (2019) (8)
Structural characterization of two tandemly arranged DNA methyltransferase genes from Neisseria gonorrhoeae MS11: N4‐cytosine specific M.NgoMXV and nonfunctional 5‐cytosine‐type M.NgoMorf2P (1999) (8)
Novel inhibitors of the rRNA ErmC' methyltransferase to block resistance to macrolides, lincosamides, streptogramine B antibiotics. (2018) (8)
RNAProbe: a web server for normalization and analysis of RNA structure probing data (2020) (7)
SUPPLEMENTARY FIGURES AND TABLES FOR : Structural bioinformatics analysis of enzymes involved in the biosynthesis pathway of the hypermodified nucleoside ms 2 io 6 A 37 in tRNA (2007) (7)
RRMdb—an evolutionary-oriented database of RNA recognition motif sequences (2019) (7)
RNA and DNA G-quadruplexes bind to human dicer and inhibit its activity (2020) (7)
Identification of amino acids important for target recognition by the DNA:m5C methyltransferase M.NgoPII by alanine‐scanning mutagenesis of residues at the protein–DNA interface (2004) (7)
Brickworx builds recurrent RNA and DNA structural motifs into medium- and low-resolution electron-density maps (2015) (7)
SupeRNAlign: a new tool for flexible superposition of homologous RNA structures and inference of accurate structure-based sequence alignments (2017) (7)
The utility of comparative models and the local model quality for protein crystal structure determination by Molecular Replacement (2012) (7)
Structure and intrinsic disorder of the proteins of theTrypanosoma brucei editosome (2015) (6)
Homology modelling of the DNA 5mC methyltransferase M.BssHII. Is permutation of functional subdomains common to all subfamilies of DNA methyltransferases? (2000) (6)
An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies (2015) (6)
Automated modeling of RNA 3D structure. (2014) (6)
Experimental evidence for a beta beta alpha-Me-finger nuclease motif to represent the active site of the caspase-activated DNase. (2003) (5)
Female-specific gene expression in dioecious liverwort Pellia endiviifolia is developmentally regulated and connected to archegonia production (2014) (5)
Identification of protein structural elements responsible for the diversity of sequence preferences among Mini-III RNases (2016) (5)
AnnapuRNA: a scoring function for predicting RNA-small molecule interactions (2020) (5)
Fold-recognition analysis predicts that the Tag protein family shares a common domain with the helix-hairpin-helix DNA glycosylases. (2002) (5)
The OB-fold proteins of the Trypanosoma brucei editosome execute RNA-chaperone activity (2018) (5)
Restriction and Homing Endonucleases (2007) (5)
RIBER/DIBER: a software suite for crystal content analysis in the studies of protein–nucleic acid complexes (2012) (5)
Molecular modelling of a psychrophilic β-galactosidase (2005) (5)
Sequence, structural, and evolutionary analysis of prokaryotic ribosomal protein L11 methyltransferases. (2000) (5)
Template Based Prediction of Three‐Dimensional Protein Structures: Fold Recognition and Comparative Modeling (2008) (4)
Modeling of Escherichia coli Endonuclease V structure in complex with DNA (2009) (4)
Integrating Prediction of Structure, Function, and Interactions (2008) (4)
Genetic characterisation of the cjaAB operon of Campylobacter coli. (2006) (4)
Protein Structure Prediction: From Recognition of Matches with Known Structures to Recombination of Fragments (2011) (4)
Mutations in human AID differentially affect its ability to deaminate cytidine and 5-methylcytidine in ssDNA substrates in vitro (2017) (4)
AAN82231 protein from uropathogenic E. coli CFT073 is a close paralog of DsbB enzymes and does not belong to the DsbI family. (2009) (4)
The Basics of Protein Sequence Analysis (2008) (4)
Comprar Prediction of Protein Structures, Functions, and Interactions | Janusz Bujnicki | 9780470517673 | Wiley (2009) (4)
Cloning and characterization of M.LmoA118I, a novel DNA:m4C methyltransferase from the Listeria monocytogenes phage A118, a close homolog of M.NgoMXV. (2001) (4)
Asymmetric DNA methylation by dimeric EcoP15I DNA methyltransferase. (2016) (3)
SURVEY AND SUMMARY Matching tRNA modiﬁcations in humans to their known and predicted enzymes (2019) (3)
Crystal Structure and Directed Evolution of Specificity of NlaIV Restriction Endonuclease. (2019) (3)
"4D Biology for health and disease" workshop report. (2011) (3)
Prediction of Protein Function from Theoretical Models (2009) (3)
fingeRNAt—A novel tool for high-throughput analysis of nucleic acid-ligand interactions (2021) (3)
Defining a novel domain that provides an essential contribution to site-specific interaction of Rep protein with DNA (2021) (3)
Site-directed mutagenesis defines the catalytic aspartate in the active site of the atypical DNA: m4C methyltransferase M.NgoMXV. (2001) (3)
Faculty Opinions recommendation of Sampling Native-like Structures of RNA-Protein Complexes through Rosetta Folding and Docking. (2019) (3)
Constrained peptides mimic a viral suppressor of RNA silencing (2020) (3)
RNA fragment assembly with experimental restraints (2021) (3)
Rational engineering of sequence specificity in R.MwoI restriction endonuclease (2012) (3)
Mutational analysis of basic residues in the N-terminus of the rRNA:m6A methyltransferase ErmC′ (2008) (3)
Specific interaction of zinc finger protein Com with RNA and the crystal structure of a self-complementary RNA duplex recognized by Com (2019) (3)
Cloning and preliminary characterization of a GATC-specific beta2-class DNA:m6A methyltransferase encoded by transposon Tn1549 from Enterococcus spp. (2005) (3)
Crystal structure of human Acinus RNA recognition motif domain (2018) (2)
Identification and modeling of a phosphatase-like domain in a tRNA 2′-O-ribosyl phosphate transferase Rit1p (2011) (2)
Genotype-phenotype map of an RNA-ligand complex (2020) (2)
Ac ce pte d M an us cri pt 1 Distribution and frequencies of post-transcriptional modifications in transfer RNAs (2014) (2)
Faculty Opinions recommendation of Development of a prototype system for archiving integrative/hybrid structure models of biological macromolecules. (2019) (2)
Structural integrity of the beta beta alpha-Metal finger motif is required for DNA binding and stable protein-DNA complex formation in R.KpnI. (2008) (2)
Bioinformatics and Computational Biology in Poland (2013) (2)
Supplemental Data Structure of a Multipartite Protein-Protein Interaction Domain in Splicing Factor Prp 8 and Its Link to Retinitis Pigmentosa (2007) (2)
Sequence-specific endoribonucleases. (2016) (2)
Faculty Opinions recommendation of RNA Framework: an all-in-one toolkit for the analysis of RNA structures and post-transcriptional modifications. (2018) (2)
First Steps of Protein Structure Prediction (2008) (2)
A toolbox for developing bioinformatics (2011) (2)
Crystal structure of 16S rRNA methyltransferase RsmC (2007) (1)
Computational Modeling Methods for 3D Structure Prediction of Ribozymes (2021) (1)
Molecular evolution of dihydrouridine synthases (2012) (1)
DEGRONOPEDIA - a web server for proteome-wide inspection of degrons (2022) (1)
Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models (2022) (1)
The utility of comparative models and the local model quality for protein crystal structure determination by Molecular Replacement (2012) (1)
Petri net–based model of the human DNA base excision repair pathway (2019) (1)
Crystal structure of glutamate racemase from Listeria monocytogenes in complex with acetate ion (2009) (1)
A composite double-/ single-stranded RNA-binding region in protein Prp 3 supports tri-snRNP stability (2015) (1)
RNAmap2D – calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures (2012) (1)
Improving pandemic preparedness and management : Lessons learned and ways forward : independent expert report (2020) (1)
Suffix techniques as a rapid method for RNA substructure search. (2008) (1)
Structure prediction of the druggable fragments in SARS-CoV-2 untranslated regions (2021) (1)
Probing of contacts between EcoRII DNA methyltransferase and DNA with the use of substrate analogs and molecular modeling (2007) (1)
Protein Fold-Recognition and Experimental Structure Determination (2004) (1)
Novel insights from structural analysis of lentiviral and gammaretroviral reverse transcriptases in complex with RNA/DNA hybrids (2013) (1)
Faculty Opinions recommendation of Blind prediction of noncanonical RNA structure at atomic accuracy. (2018) (1)
Cryo-EM reveals dynamics of Tetrahymena group I intron self-splicing (2023) (1)
MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins (2012) (1)
Crystal structure of glutamate racemase from Listeria monocytogenes in complex with succinic acid (2009) (1)
Life, Environmental and Geo Sciences Committee Opinion Paper: The Importance of International Collaboration for Fostering Frontier Research (2014) (1)
Measurement of DNA Bend Angles Using DNA Topology (2002) (1)
NACDDB: Nucleic Acid Circular Dichroism Database (2022) (1)
DNAzymeBuilder, a web application for in situ generation of RNA/DNA-cleaving deoxyribozymes (2022) (1)
Faculty Opinions recommendation of Fitting corrections to an RNA force field using experimental data. (2019) (0)
Mutational analysis defines the roles of conserved residues in the predicted catalytic pocket and suggests a model of protein-RNA interactions of the methyltransferase ErmC’ (2005) (0)
Faculty Opinions recommendation of Accurate prediction of protein structures and interactions using a three-track neural network. (2021) (0)
RNA 3D structure prediction using multiple sequence alignment information (2019) (0)
Structure of eukaryotic 2′-O-ribose methyltransferase in complex with mRNA cap analogue (2012) (0)
RNA 3D structure prediction guided by independent folding of homologous sequences (2019) (0)
Novel insights from structural analysis of lentiviral and gammaretroviral reverse transcriptases in complex with RNA/DNA hybrids (2013) (0)
Crystal structure of Sulfolobus acidocaldarius Trm10 at 2.4 angstrom resolution. (2016) (0)
Scientific research and the Public Procurement Act (2013) (0)
Faculty Opinions recommendation of Estimating the power of sequence covariation for detecting conserved RNA structure. (2020) (0)
Faculty Opinions recommendation of Assessing the accuracy of direct-coupling analysis for RNA contact prediction. (2020) (0)
Structural bases of peptidoglycan recognition by lysostaphin SH3b domain (2019) (0)
Erratum to: Cell death upon epigenetic genome methylation: a novel function of methyl-specific deoxyribonucleases (2012) (0)
THEORETICAL MODEL OF E.COLI 16S RRNA M5C967 METHYLTRANSFERASE SUN (2001) (0)
Novel DNA-binding fold and DNA-recognition mode discovered in restriction enzyme PabI (2008) (0)
RESTRICTION ENDONUCLEASE DpnI IN COMPLEX WITH TARGET DNA (2012) (0)
Engineered “restriction RNases” for sequence-specific cleavage of dsRNA and RNA in DNA-RNA hybrids (2015) (0)
Computational modelling of RNA 3D structures and RNA–protein complexes with the use of experimental data (2021) (0)
1 1 fingeRNAt-a novel tool for high-throughput 2 analysis of nucleic acid-ligand interactions 3 4 (2022) (0)
Comprar Practical Bioinformatics | Bujnicki, Janusz M. | 9783540742678 | Springer (2008) (0)
Faculty Opinions recommendation of Statistical modeling of RNA structure profiling experiments enables parsimonious reconstruction of structure landscapes. (2018) (0)
Faculty Opinions recommendation of ShaKer: RNA SHAPE prediction using graph kernel. (2019) (0)
Crystal structure of Danio rerio Lin41 filamin-NHL domains in complex with lin-29A 5'UTR 13mer RNA (2018) (0)
Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 Protein in complex with m7GpppG and SAM (2014) (0)
Surface-driven RNA-refolding by the OB-fold proteins of the Trypanosoma brucei editosome (2017) (0)
Crystal structure and mechanism of action of the N 6-methyladenine-dependent type IIM restriction endonuclease (2012) (0)
Towards Obtaining a Nanoscale Structure of Terminal Regions of japanese Encephalitis Virus Genome (2019) (0)
Faculty Opinions recommendation of Direct-Coupling Analysis of nucleotide coevolution facilitates RNA secondary and tertiary structure prediction. (2017) (0)
BRICKWORXbuilds recurrent RNA and DNA structural motifs into medium and low-resolution electron density maps (2015) (0)
Protein from Uropathogenic E . coli CFT 073 Is a Close Paralog of DsbB Enzymes and Does Not Belong to the DsbI Family (2009) (0)
Theoretical predictions of the impact of the trisubstituted pyrophosphate internucleotide bond on B DNA fragments (2005) (0)
Nucleic Acids and Molecular Biology (1989) (0)
A Dna Mimic Caught In The Act: 3D Electron Microscopy Shows Ecoki Methyltransferase In Complex With The T7 Antirestriction Protein Ocr. (2009) (0)
Importance of local model quality in molecular replacement method (2007) (0)
Fold recognition, homology modeling, docking simulations, kinetics analysis and mutagenesis of ATP/CTP:tRNA nucleotidyltransferase from Methanococcus jannaschii (2003) (0)
Faculty Opinions recommendation of Rigid-body fitting to atomic force microscopy images for inferring probe shape and biomolecular structure. (2021) (0)
THEORETICAL MODEL OF S.CEREVISIAE CAP 0 (MRNA:GUANINE-N7) METHYLTRANSFERASE (2001) (0)
Faculty Opinions recommendation of Going beyond base-pairs: topology-based characterization of base-multiplets in RNA. (2019) (0)
Correction: Cell death upon epigenetic genome methylation: a novel function of methyl-specific deoxyribonucleases (2012) (0)
Topology of Large RNA Junctions Explored by High-Precision FRET (2014) (0)
Author response: A composite double-/single-stranded RNA-binding region in protein Prp3 supports tri-snRNP stability and splicing (2015) (0)
XMRV reverse transcriptase in complex with RNA/DNA hybrid (2013) (0)
Faculty Opinions recommendation of A deep learning framework to predict binding preference of RNA constituents on protein surface. (2020) (0)
Comparison of crystal structures of NF-kB p 50 / RelB / DNA and p 52 / RelB / DNA complexes (2008) (0)
Structure and mechanism of reverse transcriptases (2015) (0)
Crystal structure of Trm14 from Pyrococcus furiosus in complex with S-adenosylmethionine (2012) (0)
Restriction endonuclease DPNI in complex with two DNA molecules (2014) (0)
Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 Protein in complex with capped RNA fragment (2014) (0)
Faculty Opinions recommendation of ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data. (2017) (0)
Supplementary material from "Human RNA cap1 methyltransferase CMTr1 cooperates with RNA helicase DHX15 to modify RNAs with highly structured 5′ termini" (2018) (0)
Mutations in human AID differentially affect its ability to deaminate cytidine and 5-methylcytidine in ssDNA substrates in vitro (2017) (0)
RNA and DNA G-quadruplexes bind to human dicer and inhibit its activity (2021) (0)
Faculty Opinions recommendation of Highly accurate protein structure prediction for the human proteome. (2021) (0)
Crystal structure of Danio rerio Lin41 filamin-NHL domains (2018) (0)
Faculty Opinions recommendation of PRAS: Predicting functional targets of RNA binding proteins based on CLIP-seq peaks. (2020) (0)
Erm methylase inhibitor - a novel defense line to combat macrolide resistance (2006) (0)
A comprehensive survey of long-range tertiary interactions and motifs in non-coding RNA structures (2022) (0)
Structure Prediction for Alternatively Spliced Proteins (2012) (0)
Appl. Environ. Microbiol.-2014-Plotka-886-95(1) (2015) (0)
Discovery of a novel restriction endonuclease from the hyperthermophilic archaeon Pyrococcus abyssi by genome comparison and application of a wheat-germ-based cell-free translation assay (2007) (0)
Corrigendum to “HsdR Subunit of the Type I Restriction-Modification Enzyme EcoR124I: Biophysical Characterisation and Structural Modelling” [J. Mol. Biol. 376(2) 2008 Feb 15: 438–452.]☆ (2020) (0)
THEORETICAL MODELS OF THE L13, L14, L15, L16, L18, L23, AND L24 PROTEIN STRUCTURES FROM THE LARGE RIBOSOMAL SUBUNIT FROM D. RADIODURANS BASED ON BIOINFORMATIC ANALYSIS (2002) (0)
Faculty Opinions recommendation of Highly accurate protein structure prediction with AlphaFold. (2021) (0)
STRUCTURAL-FUNCTIONAL ANALYSIS OF BIOPOLYMERS AND THEIR COMPLEXES Probing of Contacts between Eco RII DNA Methyltransferase and DNA with the Use of Substrate Analogs and Molecular Modeling (2007) (0)
Edinburgh Research Explorer Integrating ELF4 into the circadian system through combined structural and functional studies (2018) (0)
Faculty of 1000 evaluation for Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families. (2018) (0)
Cystal structure of Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 (2014) (0)
The structure of BsTrmB (2006) (0)
Evolution of Haloalkane Dehalogenase Protein Family (2007) (0)
FRET, SAXS and Molecular Simulations Resolve the Solution Structures of Three Coexisting Conformers of Flexible RNA Four-Way Junction (2017) (0)
NlaIV restriction endonuclease (2019) (0)
Structural Interaction Fingerprints and Machine Learning for predicting and explaining binding of small molecule ligands to RNA (2023) (0)
Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition (2018) (0)
Crystal Structure of Mini-ribonuclease 3 from Bacillus subtilis (2015) (0)
Faculty Opinions recommendation of Revealing the distinct folding phases of an RNA three-helix junction. (2018) (0)
Structural basis of sRNA RsmZ regulation of Pseudomonas aeruginosa virulence (2022) (0)
Erratum to: Cloning and analysis of a bifunctional methyltransferase/restriction endonuclease TspGWI, the prototype of a Thermussp. enzyme family (2014) (0)
Faculty Opinions recommendation of An RNA-centric historical narrative around the Protein Data Bank. (0)
Structure of Halothermothrix orenii fructokinase (FRK) (2010) (0)
Mva 1269 I has two catalytic centres 1 Mva 1269 I : A MONOMERIC TYPE IIS RESTRICTION ENDONUCLEASE FROM MICROCOCCUS VARIANS WITH TWO EcoRI-AND FokI-LIKE CATALYTIC DOMAINS † (2005) (0)
Crystal structure of a self-complementary RNA duplex recognized by Com (2019) (0)
Crystal structure of PA01 protein, putative LysR family transcriptional regulator from Pseudomonas aeruginosa (2009) (0)
Technically designed sequence-specific ribonuclease H AND METHOD FOR ESTABLISHING SEKVENSPREFERENCEN OF DNA-RNA hybrid binding proteins (2012) (0)
Protein Structure Prediction: Concepts and Applications. Anna Tramontano. (2006) (0)
Faculty Opinions recommendation of QuanTest2: benchmarking multiple sequence alignments using secondary structure prediction. (2020) (0)
Evaluation of Molecular Models for the Affinity Maturation of Antibodies: Roles of Cytosine Deamination by AID and DNA Repair (2006) (0)
Molecular insights into RNA recognition and gene regulation by the TRIM-NHL protein Mei-P26 (2021) (0)
Conformational Entropy of the RNA Phosphate-Sugar Backbone (2014) (0)
methyltransferase, a genuine autonomously folding domain (2006) (0)
The data from GeneSilico MetaServer for CASP10 (2012) targets (2017) (0)
trypanosomes SMN-assisted assembly of snRNP-specific Sm cores in Material Supplemental (2009) (0)
Faculty of 1000 evaluation for RNA structural dynamics as captured by molecular simulations: A comprehensive overview. (2018) (0)
Computational prediction of RNA 3 D structures and structure-based design of RNA sequences (2016) (0)
Faculty Opinions recommendation of RNAMotifContrast: a method to discover and visualize RNA structural motif subfamilies. (0)
present in its own mRNA S 6 : S 18 ribosomal protein complex interacts with a structural motif Material Supplemental (2013) (0)
Crystal structure of Sulfolobus acidocaldarius Trm10 at 2.1 angstrom resolution. (2016) (0)
Crystal structure of Trm14 from Pyrococcus furiosus in complex with sinefungin (2012) (0)
Analytics of Protein‐DNA Interactions. By Harald Seitz (ed.) (2007) (0)
Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes (2015) (0)
methyltransferases involved in mRNA cap structure formation (2014) (0)
Crystal structure of Trm14 from Pyrococcus furiosus in complex with S-adenosyl-L-homocysteine (2012) (0)
Crystal Structure of a ribosomal RNA methyltranferase (2008) (0)
Atomic model of the DNA-bound methylase complex from the Type I restriction-modification enzyme EcoKI (M2S1). Based on fitting into EM map 1534. (2011) (0)
Female-specific gene expression in dioecious liverwort Pellia endiviifolia is developmentally regulated and connected to archegonia production (2014) (0)
1D2DSimScore: A novel method for comparing contacts in biomacromolecules and their complexes (2022) (0)
Faculty Opinions recommendation of Overcoming the design, build, test bottleneck for synthesis of nonrepetitive protein-RNA cassettes. (0)
Annotation of tRNA modifications genes in model organisms (2019) (0)
Nucleic Acids and Molecular Biology (1995) (0)
Faculty Opinions recommendation of Protein interaction networks revealed by proteome coevolution. (2019) (0)
Studying Biomolecular Interactions: A Hybrid Approach (2017) (0)
Crystal structure of Sulfolobus acidocaldarius TrmJ in complex with S-adenosyl-L-Homocysteine (2014) (0)
Faculty Opinions recommendation of Integrative Structural Biology of Protein-RNA Complexes. (2020) (0)
Faculty Opinions recommendation of Inferring protein 3D structure from deep mutation scans. (2019) (0)
Structure and function of the m2G6 methyltransferase Trm14/TrmN from two domains of life (2011) (0)
Structure of CMTr2 in complex with capped mRNA: theoretical model (2013) (0)
Crystal structure of TrmN from Thermus thermophilus (2012) (0)
ModeRNA builds RNA 3D Models from Template Structures (2010) (0)

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University of Warsaw