Jill P. Mesirov | Academic Influence

Jill P. Mesirov's AcademicInfluence.com Rankings

Jill P. Mesirov

Computer Science

#2703

World Rank

#2828

Historical Rank

#1149

USA Rank

Database

#1263

World Rank

#1331

Historical Rank

#349

USA Rank

computer-science Degrees

Jill P. Mesirov

Biology

#3813

World Rank

#5778

Historical Rank

#1512

USA Rank

Computational Biology

#71

World Rank

#71

Historical Rank

#24

USA Rank

biology Degrees

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Computer Science
Biology

Jill P. Mesirov's Degrees

PhD Mathematics University of California, Berkeley
Bachelors Mathematics University of California, Berkeley

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Why Is Jill P. Mesirov Influential?

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According to Wikipedia, Jill P. Mesirov is an American mathematician, computer scientist, and computational biologist who is the Associate Vice Chancellor for Computational Health Sciences at the University of California, San Diego. She previously held an adjunct faculty position at Boston University and was the associate director and chief informatics officer at the Eli and Edythe L. Broad Institute of MIT and Harvard.

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Jill P. Mesirov's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles (2005) (33800)
Initial sequencing and analysis of the human genome. (2001) (15222)
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. (1999) (12024)
Integrative Genomics Viewer (2011) (10276)
Comprehensive molecular portraits of human breast tumors (2012) (7791)
PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes (2003) (6859)
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration (2012) (6532)
Comprehensive molecular characterization of human colon and rectal cancer (2012) (6141)
The Cancer Cell Line Encyclopedia enables predictive modeling of anticancer drug sensitivity (2012) (6062)
Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. (2010) (5816)
Comprehensive genomic characterization defines human glioblastoma genes and core pathways (2008) (5775)
Initial sequencing and comparative analysis of the mouse genome. (2002) (4609)
The Molecular Signatures Database Hallmark Gene Set Collection (2015) (4513)
Comprehensive molecular profiling of lung adenocarcinoma (2014) (4095)
Molecular signatures database (MSigDB) 3.0 (2011) (3692)
Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. (1999) (3275)
Comprehensive genomic characterization of squamous cell lung cancers (2012) (2998)
The Molecular Signatures Database (MSigDB) hallmark gene set collection. (2015) (2763)
Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning (2002) (2443)
Prediction of central nervous system embryonal tumour outcome based on gene expression (2002) (2421)
Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1 (2009) (2300)
Multiclass cancer diagnosis using tumor gene expression signatures (2001) (2107)
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype (2004) (1905)
GenePattern 2.0 (2006) (1785)
Consensus Clustering: A Resampling-Based Method for Class Discovery and Visualization of Gene Expression Microarray Data (2003) (1757)
Metagenes and molecular pattern discovery using matrix factorization (2004) (1750)
GSEA-P: a desktop application for Gene Set Enrichment Analysis (2007) (1121)
Dependency of a therapy-resistant state of cancer cells on a lipid peroxidase pathway (2017) (911)
Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom. (2016) (820)
Carcinoma-associated fibroblast-like differentiation of human mesenchymal stem cells. (2008) (780)
MEDULLOBLASTOMA EXOME SEQUENCING UNCOVERS SUBTYPE-SPECIFIC SOMATIC MUTATIONS (2012) (686)
ARACHNE: a whole-genome shotgun assembler. (2002) (686)
Chemosensitivity prediction by transcriptional profiling (2001) (663)
Integrative genomic analysis of medulloblastoma identifies a molecular subgroup that drives poor clinical outcome. (2011) (643)
Variant Review with the Integrative Genomics Viewer. (2017) (597)
β-Catenin-Driven Cancers Require a YAP1 Transcriptional Complex for Survival and Tumorigenesis (2012) (557)
Efficient mapping of mendelian traits in dogs through genome-wide association (2007) (525)
Prognostically relevant gene signatures of high-grade serous ovarian carcinoma. (2012) (509)
RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure (2016) (455)
Automated high-dimensional flow cytometric data analysis (2009) (434)
An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis (2005) (421)
Human and mouse gene structure: comparative analysis and application to exon prediction (2000) (412)
Systematic investigation of genetic vulnerabilities across cancer cell lines reveals lineage-specific dependencies in ovarian cancer (2011) (412)
A melanoma cell state distinction influences sensitivity to MAPK pathway inhibitors. (2014) (412)
Subclass Mapping: Identifying Common Subtypes in Independent Disease Data Sets (2007) (369)
Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA , IDH 1 , EGFR , and NF 1 Citation Verhaak (2010) (362)
Whole-genome sequence assembly for mammalian genomes: Arachne 2. (2003) (348)
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies (2014) (320)
Molecular classification of multiple tumor types (2001) (291)
Accessible Reproducible Research (2010) (276)
Hybrid system for protein secondary structure prediction. (1992) (275)
Estimating Dataset Size Requirements for Classifying DNA Microarray Data (2003) (272)
Prediction of high-responding peptides for targeted protein assays by mass spectrometry (2009) (269)
β-Catenin-Driven Cancers Require a YAP1 Transcriptional Complex for Survival and Tumorigenesis (2013) (268)
Class prediction and discovery using gene expression data (2000) (248)
Distinct physiological states of Plasmodium falciparum in malaria-infected patients (2007) (246)
Gene Expression Changes in an Animal Melanoma Model Correlate with Aggressiveness of Human Melanoma Metastases (2008) (224)
Loss of the tumor suppressor Snf5 leads to aberrant activation of the Hedgehog-Gli pathway (2010) (217)
Criteria for the use of omics-based predictors in clinical trials (2013) (216)
Support vector ma-chine classification of microarray data (2000) (211)
Compendium of Immune Signatures Identifies Conserved and Species-Specific Biology in Response to Inflammation. (2016) (202)
Inactivation of the Snf5 tumor suppressor stimulates cell cycle progression and cooperates with p53 loss in oncogenic transformation. (2005) (199)
Assembly of polymorphic genomes: algorithms and application to Ciona savignyi. (2005) (197)
High expression of lymphocyte-associated genes in node-negative HER2+ breast cancers correlates with lower recurrence rates. (2007) (196)
Cancer Vulnerabilities Unveiled by Genomic Loss (2012) (195)
Juicebox.js Provides a Cloud-Based Visualization System for Hi-C Data (2017) (180)
MYC regulation of a “poor-prognosis” metastatic cancer cell state (2010) (173)
Targeted Tumor-Penetrating siRNA Nanocomplexes for Credentialing the Ovarian Cancer Oncogene ID4 (2012) (171)
Inhibition of KRAS-driven tumorigenicity by interruption of an autocrine cytokine circuit. (2014) (167)
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies (2014) (161)
Metagene projection for cross-platform, cross-species characterization of global transcriptional states (2007) (152)
A functional landscape of resistance to ALK inhibition in lung cancer. (2015) (151)
A resampling-based method for class discovery and visualization of gene expression microarray data (2003) (125)
Targeting an IKBKE cytokine network impairs triple-negative breast cancer growth. (2014) (125)
ATARiS: Computational quantification of gene suppression phenotypes from multisample RNAi screens (2013) (124)
Comparative gene marker selection suite (2006) (122)
Computational biology (1999) (119)
Addendum: The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity (2018) (117)
Proteomics, Post-translational Modifications, and Integrative Analyses Reveal Molecular Heterogeneity within Medulloblastoma Subgroups. (2018) (113)
Criteria for the use of omics-based predictors in clinical trials: explanation and elaboration (2013) (113)
Erratum: Initial sequencing and analysis of the human genome: International Human Genome Sequencing Consortium (Nature (2001) 409 (860-921)) (2001) (106)
Integrative radiogenomic profiling of squamous cell lung cancer. (2013) (106)
Quantitative visualization of alternative exon expression from RNA-seq data (2015) (106)
Sashimi plots: Quantitative visualization of RNA sequencing read alignments (2013) (105)
GeneCluster 2.0: an advanced toolset for bioarray analysis (2004) (99)
Molecular adaptations of striatal spiny projection neurons during levodopa-induced dyskinesia (2014) (94)
A Curated Resource for Phosphosite-specific Signature Analysis* (2018) (93)
Exome Sequencing of African-American Prostate Cancer Reveals Loss-of-Function ERF Mutations. (2017) (91)
An Efficient Implementation of the Back-propagation Algorithm on the Connection Machine CM-2 (1989) (91)
Cytoscape: the network visualization tool for GenomeSpace workflows. (2014) (87)
Characterizing genomic alterations in cancer by complementary functional associations (2016) (86)
Cytoscape: the network visualization tool for GenomeSpace workflows (2014) (84)
Using GenePattern for Gene Expression Analysis (2008) (82)
Cytometric profiling in multiple sclerosis uncovers patient population structure and a reduction of CD8low cells. (2008) (81)
Integrated Genomic Analysis of the 8q24 Amplification in Endometrial Cancers Identifies ATAD2 as Essential to MYC-Dependent Cancers (2013) (74)
Predicting relapse in patients with medulloblastoma by integrating evidence from clinical and genomic features. (2011) (74)
Systematic interrogation of 3q26 identifies TLOC1 and SKIL as cancer drivers. (2013) (73)
An Analytical Method for Multiclass Molecular Cancer Classification (2003) (72)
The limitations of simple gene set enrichment analysis assuming gene independence (2011) (66)
An RNA Profile Identifies Two Subsets of Multiple Sclerosis Patients Differing in Disease Activity (2012) (60)
Comment on "The Consensus Coding Sequences of Human Breast and Colorectal Cancers" (2007) (59)
Role of Tet1/3 Genes and Chromatin Remodeling Genes in Cerebellar Circuit Formation (2016) (59)
Combo: a whole genome comparative browser (2006) (59)
Gene signatures related to B‐cell proliferation predict influenza vaccine‐induced antibody response (2014) (57)
The backpropagation algorithm on grid and hypercube architectures (1990) (56)
Mathematical approaches to biomolecular structure and dynamics (1996) (54)
Leveraging premalignant biology for immune-based cancer prevention (2016) (52)
Joint Modeling and Registration of Cell Populations in Cohorts of High-Dimensional Flow Cytometric Data (2013) (49)
DiSCoVERing Innovative Therapies for Rare Tumors: Combining Genetically Accurate Disease Models with In Silico Analysis to Identify Novel Therapeutic Targets (2016) (48)
Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace (2015) (47)
Portraits of breast cancer progression (2007) (46)
igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV) (2020) (46)
OTX2 Activity at Distal Regulatory Elements Shapes the Chromatin Landscape of Group 3 Medulloblastoma. (2017) (43)
GeNets: A unified web platform for network-based analyses of genomic data (2018) (43)
MicroSCALE Screening Reveals Genetic Modifiers of Therapeutic Response in Melanoma (2012) (42)
Continued fraction expansions of rational expressions with irreducible denominators in characteristic 2 (1987) (40)
Responses to Bacteria, Virus, and Malaria Distinguish the Etiology of Pediatric Clinical Pneumonia. (2016) (36)
The GenePattern Notebook Environment. (2017) (35)
Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States. (2017) (33)
GeneCruiser: a web service for the annotation of microarray data (2005) (33)
Compression of Structured High-Throughput Sequencing Data (2012) (33)
Inhibition of dual-specificity tyrosine phosphorylation-regulated kinase 2 perturbs 26S proteasome-addicted neoplastic progression (2019) (31)
A Curated Resource for Phosphosite-specific Signature Analysis. (2019) (31)
Parallel approaches to short range molecular dynamics simulations (1991) (30)
Sequencing a genome by walking with clone-end sequences: a mathematical analysis. (1999) (28)
An optimal hypercube direct N-body solver on the Connection Machine (1990) (26)
Kataegis Expression Signature in Breast Cancer Is Associated with Late Onset, Better Prognosis, and Higher HER2 Levels. (2016) (25)
AraPath: a knowledgebase for pathway analysis in Arabidopsis (2012) (25)
Study of protein sequence comparison metrics on the connection machine CM-2 (1989) (25)
GenePattern flow cytometry suite (2013) (23)
Improving genome annotations using phylogenetic profile anomaly detection (2005) (22)
Transcriptional Profiling of Plasmodium falciparum Parasites from Patients with Severe Malaria Identifies Distinct Low vs. High Parasitemic Clusters (2012) (22)
Functional Precision Medicine Identifies New Therapeutic Candidates for Medulloblastoma (2020) (21)
GeNets: a unified web platform for network-based genomic analyses (2018) (20)
Control of Huntington's Disease-Associated Phenotypes by the Striatum-Enriched Transcription Factor Foxp2. (2017) (19)
Prediction of response to therapy with ezatiostat in lower risk myelodysplastic syndrome (2012) (17)
Lymphatic-preserving treatment sequencing with immune checkpoint inhibition unleashes cDC1-dependent antitumor immunity in HNSCC (2022) (14)
Very large scale computation in the 21st century (1992) (13)
Plasmodium falciparum gene expression measured directly from tissue during human infection (2014) (12)
Two-dimensional, viscous, incompressible flow in complex geometries on a massively parallel processor (1992) (12)
Hypercube Algorithms for Direct N-Body Solvers for Different Granularities (1993) (11)
Pten Deficiency Leads To Proteasome Addiction, A Novel Vulnerability In Glioblastoma. (2021) (11)
A Genome-Wide siRNA Screen in Mammalian Cells for Regulators of S6 Phosphorylation (2015) (10)
Model-based assessment of mammalian cell metabolic functionalities using omics data (2021) (10)
A genomic data viewer for iPad (2015) (10)
In vivo profiles in malaria are consistent with a novel physiological state (2009) (8)
GenomeSpace: an environment for frictionless bioinformatics (2013) (8)
A FZD7-specific Antibody–Drug Conjugate Induces Ovarian Tumor Regression in Preclinical Models (2021) (8)
Sashimi plots: Quantitative visualization of alternative isoform expression from RNA-seq data (2014) (8)
Breast cancer stratification from analysis of micro-array data of micro-dissected specimens. (2007) (8)
Gene Set Enrichment Analysis Made Right (2011) (8)
Juicebox Provides a Visualization System for HiC Contact Maps with Unlimited Zoom Citation (2016) (7)
Transcriptional Categorization of the Etiology of Pneumonia Syndrome in Pediatric Patients in Malaria-Endemic Areas (2016) (7)
What does your cell really do? Model-based assessment of mammalian cells metabolic functionalities using omics data (2020) (7)
Protein structure prediction by a data-level parallel algorithm (1989) (7)
Biallelic loss of GNAS in a patient with pediatric medulloblastoma (2019) (6)
Ovarian Cancer Oncogene Targeted Tumor-Penetrating siRNA Nanocomplexes for Credentialing the (2012) (6)
Protein Structure Prediction by Memory-Base Reasoning, (1988) (6)
Targeted Tumor-Penetrating siRNA Nanocomplexes for Credentialing the Ovarian Cancer Target ID4 (2012) (6)
Imaging-AMARETTO: An Imaging Genomics Software Tool to Interrogate Multiomics Networks for Relevance to Radiography and Histopathology Imaging Biomarkers of Clinical Outcomes (2020) (6)
The landscape of extrachromosomal circular DNA in medulloblastoma (2021) (5)
TORC1/2 kinase inhibition depletes glutathione and synergizes with carboplatin to suppress the growth of MYC-driven medulloblastoma. (2021) (5)
Location of Gastrointestinal Stromal Tumor (GIST) in the Stomach Predicts Tumor Mutation Profile and Drug Sensitivity (2021) (5)
Abstract 5455: Integrative analysis of the Cancer Cell Line Encyclopedia reveals genetic and transcriptional predictors of compound sensitivity (2011) (5)
Criteria for use of omics-based predictors in NCI-sponsored clinical trials. (2012) (4)
application to hematopoietic differentiation Interpreting patterns of gene expression with self-organizing maps: Methods and (2007) (4)
Data Parallel Quadratic Programming on Box-Constrained Problems (1995) (4)
Constellation Map: Downstream visualization and interpretation of gene set enrichment results (2015) (4)
An accessible GenePattern notebook for the copy number variation analysis of Illumina Infinium DNA methylation arrays (2018) (4)
Programming Direct N-Body Solvers on Connection Machines (1992) (4)
Golub , Monitoring and Class Prediction by Gene Expression Molecular Classification of Cancer : Class Discovery (2007) (3)
A method for downstream analysis of gene set enrichment results facilitates the biological interpretation of vaccine efficacy studies (2016) (3)
Computing turbulent flow in complex geometries on a massively parallel processor (1991) (3)
Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings (2005) (3)
KITlow Cells Mediate Imatinib Resistance in Gastrointestinal Stromal Tumor (2021) (3)
Addendum: The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity (2018) (3)
Research in Computational Molecular Biology (vol. # 3500) : 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings (2005) (2)
Addendum: The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity (2012) (2)
Abstract 3968: Exploring cancer datasets in the integrative genomics viewer (IGV) (2012) (2)
Abstract 3966: GenomeSpace: An environment for frictionless bioinformatics (2012) (2)
A parallel implementation of the random vortex method (1991) (2)
An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data. (2018) (2)
An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data (2018) (2)
Germline variants that influence the tumor immune microenvironment also drive response to immunotherapy (2021) (2)
A unified GenomeSpace recipe to identify essential genes and associated subnetworks from Genome-Scale CRISPR-Cas9 knockout screens (2018) (2)
Abstract 4868: Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations within a wide spectrum of genetic heterogeneity (2012) (2)
Su.86. Automated High-dimensional Flow Cytometric Data Analysis (2008) (2)
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R, and GenePattern Notebook implementations of CoGAPS (2022) (1)
Abstract 5141: GenomeSpace: an environment for frictionless bioinformatics. (2013) (1)
Precision Medicine: Improving health through high-resolution analysis of personal data. (2018) (1)
Research in Computational Molecular Biology (2008) (1)
Abstract PR04: A melanoma transcriptional state distinction influences sensitivity to MAPK pathway inhibitors (2015) (1)
Single-cell characterization of step-wise acquisition of carboplatin resistance in ovarian cancer (2021) (1)
Perturbation theory for condition $(C)$ in the calculus of variations (1977) (1)
Therapeutics , Targets , and Chemical Biology Integrative Radiogenomic Pro fi ling of Squamous Cell Lung Cancer (2013) (1)
Gene Expression Studies May Identify Lower Risk Myelodysplastic Syndrome Patients Likely to Respond to Therapy with Ezatiostat Hydrochloride (TLK199) (2011) (1)
Plasmodium falciparumgene expression measured directly from tissue during human infection (2014) (1)
A unified web platform for network-based analyses of genomic data (2017) (1)
Gene expression Quantitative visualization of alternative exon expression from RNA-seq data (2015) (1)
Abstract 1313: Mutually exclusive somatic mutations in WNT pathway medulloblastomas reveal a critical interaction between DDX3X and SMARCA4 (2012) (1)
Single-cell characterization of step-wise acquisition of carboplatin resistance in ovarian cancer (2022) (1)
CRRAO Advanced Institute of Mathematics, Statistics and Computer Science (AIMSCS) (2013) (1)
Contributing authors (2004) (0)
A genomic data viewer for iPad (2015) (0)
Subgroup-Enriched Pathways and Kinase Signatures in Medulloblastoma Patient-Derived Xenografts (2022) (0)
Tool Juicebox Provides a Visua lization System for HiC Contact Maps with Unlimited Zoom Graphical (0)
Abstract 1555: Pan-cancer patterns of synthetic lethality: statistical modeling of gene dependency profiles (2017) (0)
Illuminating the onco-GPCRome: targeting the prostaglandin receptor-Gαs signaling axis as a novel immune checkpoint in cancer (2020) (0)
Data Preprocessing Data normalization , Imputation Gene Filtering PCA 85 % variation k-Level Ensemble Consensus Clustering (2007) (0)
Comprehensivemolecularcharacterization of human colon and rectal cancer (2012) (0)
Gene expression Comparative gene marker selection suite (2006) (0)
Abstract PR4: Integrative analysis of genomic and pharmacologic data from the Cancer Cell Line Encyclopedia (2010) (0)
A phenotypically supervised single-cell analysis protocol to study within-cell-type heterogeneity of cultured mammalian cells (2021) (0)
The Molecular Signatures Database Revisited: Extending Support for Mouse Data (2022) (0)
46. Data driven refinement of gene signatures for enrichment analysis and cell state characterization (2022) (0)
A multi-tool recipe to identify regions of protein-DNA binding and their influence on associated gene expression. (2017) (0)
OMIC-01. THE LANDSCAPE OF EXTRACHROMOSOMAL CIRCULAR DNA IN MEDULLOBLASTOMA SUBGROUPS (2021) (0)
GenePattern Notebooks: An integrative analytical environment for genomic research (2016) (0)
Abstract 4411: A gene set enrichment analysis approach in single-cells along pseudotime trajectories reveals the dynamic activity of oncogenic pathways (2020) (0)
Abstract 3825: Germline modifiers of the tumor immune microenvironment reveal drivers of immunotherapy response (2022) (0)
Abstract A09: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of RAS/MAPK Cellular States (2017) (0)
Abstract 3035: Decomposing oncogenic transcriptional signatures to generate maps of divergent cellular states (2017) (0)
Abstract 6568: Extended support for model organisms: The next frontier for the molecular signatures database (2023) (0)
Very Large Scale Computation in the Twenty-First Century (1991) (0)
GenomeSpace: Interoperable bioinformatics tools with crowd-sourced analysis recipes (2016) (0)
3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma (2023) (0)
EPEN-18. Oncogenic 3D genome conformations identify novel therapeutic targets in ependymoma (2020) (0)
Abstract 3207: GenePattern Notebook: An integrative analytical environment for cancer research (2020) (0)
MOLECULAR CANCER THERAPEUTICS | TARGETING DRUG RESISTANCE KIT Cells Mediate Imatinib Resistance in Gastrointestinal Stromal Tumor (2021) (0)
Abstract 2476: DiSCoVERing innovative therapies for rare tumors: Combining genetically accurate disease models with advanced in silico analysis to identify novel therapeutic targets (2016) (0)
Abstract 447: Integrated omics modeling of transcriptional regulation in medulloblastoma subtypes (2020) (0)
Discovery of novel candidate oncogenic pathway activators with REVEALER (2011) (0)
Abstract 1903: GenePattern Notebook: An integrative analytical environment for cancer research (2016) (0)
analysis Combo: a whole genome comparative browser (2006) (0)
MB-103DiSCoVERing INNOVATIVE THERAPIES: COMBINING GENETICALLY ACCURATE DISEASE MODELS OF MEDULLOBLASTOMA WITH ADVANCED IN SILICO ANALYSIS TO IDENTIFY NOVEL THERAPEUTIC TARGETS (2016) (0)
Genome analysis Combo : a whole genome comparative browser (2006) (0)
ISMB 2008 Organization (2008) (0)
Abstract 4760: Molecular classification and risk-stratification in medulloblastoma using an integrative genomic approach (2011) (0)
Abstract 5331: GenomeSpace: An environment for frictionless bioinformatics (2014) (0)
MBRS-65. CHEMI-GENOMIC ANALYSIS OF PATIENT-DERIVED XENOGRAFTS TO IDENTIFY PERSONALIZED THERAPIES FOR MEDULLOBLASTOMA (2016) (0)
A multi-tool recipe to identify regions of protein-DNA binding and their influence on associated gene expression (2017) (0)
Abstract 2073: Genomics to Notebook (g2nb): Extending the electronic notebook to address the needs of cancer bioinformatics (2023) (0)
GENE-15. TARGETING OF EPENDYMOMA AS INFORMED BY ONCOGENIC 3D GENOME ORGANIZATION (2019) (0)
EPEN-04. ONCOGENIC 3D TUMOR GENOME ORGANIZATION IDENTIFIES NEW THERAPEUTIC TARGETS IN EPENDYMOMA (2020) (0)
Basic Sequence Analysis and Annotation Laboratory (2007) (0)
Novel Computational Methods to Enhance the Analysis of Cytometric Immunophenotypes (2007) (0)
ISMB 2008 Toronto (2008) (0)
PATH-31. ECDNA PROMOTES TUMORIGENICITY AND INTRATUMORAL HETEROGENEITY IN MEDULLOBLASTOMA (2022) (0)
Developmental Basis of SHH Medulloblastoma Heterogeneity (2022) (0)
Inactivation of histone chaperone HIRA unmasks a link between normal embryonic development of melanoblasts and maintenance of adult melanocyte stem cells (2022) (0)
Prediction of high-responding peptides in electrospray mass spectrometry (2009) (0)
Cancer Vulnerabilities Unveiled by Genomic Loss Citation (2012) (0)
Genomics to Notebook (g2nb): extending the electronic notebook to address the challenges of bioinformatics analysis (2023) (0)
Metagene projection strategies for discovering mechanisms of T cell differentiation in gene expression profiling data (58.13) (2012) (0)
Abstract 5106: The GenePattern Notebook environment for reproducible cancer research (2018) (0)
Abstract 6214: Detecting and characterizing extrachromosomal DNA in medulloblastoma at single-cell resolution (2022) (0)
Abstract 95: The landscape of extrachromosomal circular DNA in medulloblastoma subgroups (2021) (0)
Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response (2022) (0)
Abstract PR5: Treatment of ovarian cancer with targeted tumor-penetrating siRNA nanocomplexes (2012) (0)
MEDB-33. The landscape of ecDNA in medulloblastoma (2022) (0)
Erratum: Hypercube Algorithms for Direct N-Body Solvers for Different Granularities (1994) (0)
Abstract C60: The integrative genomics viewer (2009) (0)
OMIC-05. PHOSPHOPROTEOMIC ANALYSIS IDENTIFIES SUBGROUP ENRICHED PATHWAYS AND KINASE SIGNATURES IN MEDULLOBLASTOMA (2021) (0)
TRANSCRIPTIONAL AND PROTEOMIC CATEGORIZATION OF THE ETIOLOGY OF PNEUMONIA SYNDROME IN PEDIATRIC PATIENTS IN MALARIA ENDEMIC AREAS (2017) (0)
Abstract B21: Childhood Cancer Molecular Map (C2M2) to define medulloblastoma heterogeneity and predict treatment response (2020) (0)
Abstract 2588: GenePattern Notebook: an environment for reproducible cancer research (2017) (0)
GenomeSpace: open source interoperability platform with crowd-sourced analysis recipes (2016) (0)
Sequencing a genome by walking with clone-end sequences (abstract): a mathematical analysis (2000) (0)
Abstract 5032: Data driven refinement of gene signatures for enrichment analysis and cell state characterization (2022) (0)
Ciona savignyi Assembly of polymorphic genomes : Algorithms and application to data (2005) (0)
GenomeSpace: integrating cloud storage providers for genomic analysis (2017) (0)
MEDB-66. Investigating intra-tumoral heterogeneity of extrachromosomal DNA in SHH medulloblastoma (2022) (0)
On the Parallelization of CHARMM on the CM-5/5E (1996) (0)
A Functional Landscape o f Resistance to ALK Inhibition in Lung Cancer Graphical Abstract Highlights (2015) (0)
Comprehensivegenomiccharacterization of squamous cell lung cancers (2012) (0)
GENE-02. CHROMOSOME CONFORMATION ANALYSIS OF EPENDYMOMA IDENTIFIES PUTATIVE TUMOR DEPENDENCY GENES ACTIVATED BY DISTAL ONCOGENIC ENHANCERS (2019) (0)
Abstract 1416: Pan-cancer mutual vulnerability and viability (2018) (0)

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