Erik Bongcam-Rudloff

Erik Bongcam-Rudloff's AcademicInfluence.com Rankings

Biology

#5240

World Rank

#7671

Historical Rank

Bioinformatics

#85

World Rank

#87

Historical Rank

Computational Biology

#212

World Rank

#213

Historical Rank

Molecular Biology

#2777

World Rank

#2820

Historical Rank

biology Degrees

Erik Bongcam-Rudloff

Computer Science

#9929

World Rank

#10416

Historical Rank

Database

#9481

World Rank

#9992

Historical Rank

computer-science Degrees

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Biology
Computer Science

Erik Bongcam-Rudloff's Degrees

PhD Molecular Biology Uppsala University
Masters Molecular Biology Uppsala University
Bachelors Molecular Biology Uppsala University

Why Is Erik Bongcam-Rudloff Influential?

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According to Wikipedia, Erik Bongcam-Rudloff is a Chilean-born Swedish biologist and computer scientist. He received his doctorate in medical sciences from Uppsala University in 1994. He is Professor of Bioinformatics and the head of SLU-Global Bioinformatics Centre at the Swedish University of Agricultural Sciences. His main research deals with development of bioinformatics solutions for the Life Sciences community.

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Erik Bongcam-Rudloff's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Data integration in the era of omics: current and future challenges (2014) (337)
Recommendations for Biomarker Identification and Qualification in Clinical Proteomics (2010) (298)
PDB_REDO: automated re-refinement of X-ray structure models in the PDB (2009) (183)
Implementation of proteomic biomarkers: making it work (2012) (155)
Comprehensive human urine standards for comparability and standardization in clinical proteome analysis (2010) (142)
A Novel Unstable Duplication Upstream of HAS2 Predisposes to a Breed-Defining Skin Phenotype and a Periodic Fever Syndrome in Chinese Shar-Pei Dogs (2011) (140)
A large duplication associated with dominant white color in pigs originated by homologous recombination between LINE elements flanking KIT (2002) (134)
Complete genome sequence of a plant associated bacterium Bacillus amyloliquefaciens subsp. plantarum UCMB5033 (2014) (93)
Type 3 cystatins; fetuins, kininogen and histidine-rich glycoprotein. (2009) (92)
Menin's interaction with glial fibrillary acidic protein and vimentin suggests a role for the intermediate filament network in regulating menin activity. (2002) (85)
Human glial fibrillary acidic protein: complementary DNA cloning, chromosome localization, and messenger RNA expression in human glioma cell lines of various phenotypes. (1991) (84)
Simulating Illumina metagenomic data with InSilicoSeq (2018) (84)
Genome Analysis of Bacillus amyloliquefaciens Subsp. plantarum UCMB5113: A Rhizobacterium That Improves Plant Growth and Stress Management (2014) (82)
PDGF induces reorganization of vimentin filaments. (1998) (74)
The Origin of the ‘Mycoplasma mycoides Cluster’ Coincides with Domestication of Ruminants (2012) (74)
Expression of recombinant platelet-derived growth factor A- and B-chain homodimers in rat-1 cells and human fibroblasts reveals differences in protein processing and autocrine effects (1988) (62)
Concepts, historical milestones and the central place of bioinformatics in modern biology: a European perspective. (2011) (62)
Cell scattering and migration induced by autocrine transforming growth factor alpha in human glioma cells in vitro. (1997) (61)
Experiences with workflows for automating data-intensive bioinformatics (2015) (60)
GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training (2015) (55)
Major ampullate spidroins from Euprosthenops australis: multiplicity at protein, mRNA and gene levels (2007) (55)
Best practices in bioinformatics training for life scientists (2013) (54)
Molecular cloning and functional characterization of the human platelet-derived growth factor alpha receptor gene promoter. (1995) (50)
The EMBRACE web service collection (2010) (50)
Effects of inducible glial fibrillary acidic protein on glioma cell motility and proliferation (2000) (45)
Complete genome sequence of Methanoculleus bourgensis strain MAB1, the syntrophic partner of mesophilic acetate-oxidising bacteria (SAOB) (2016) (42)
Conserved structure and inferred evolutionary history of long terminal repeats (LTRs) (2013) (42)
Utilizing the Dog Genome in the Search for Novel Candidate Genes Involved in Glioma Development—Genome Wide Association Mapping followed by Targeted Massive Parallel Sequencing Identifies a Strongly Associated Locus (2016) (42)
A Community Standard Format for the Representation of Protein Affinity Reagents* (2009) (42)
Brachyspira suanatina sp. nov., an enteropathogenic intestinal spirochaete isolated from pigs and mallards: genomic and phenotypic characteristics (2015) (38)
Camel Streptococcus agalactiae populations are associated with specific disease complexes and acquired the tetracycline resistance gene tetM via a Tn916-like element (2013) (37)
Establishment of a European Network for Urine and Kidney Proteomics. (2008) (36)
Glial reactions in the central nervous system following heat stress. (1998) (36)
The First Sequenced Carnivore Genome Shows Complex Host-Endogenous Retrovirus Relationships (2011) (33)
The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers (2014) (33)
A DNA Sequence Directed Mutual Transcription Regulation of HSF1 and NFIX Involves Novel Heat Sensitive Protein Interactions (2009) (31)
Genome-Guided Analysis and Whole Transcriptome Profiling of the Mesophilic Syntrophic Acetate Oxidising Bacterium Syntrophaceticus schinkii (2016) (30)
Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite development (2012) (30)
Relationship between genome and epigenome - challenges and requirements for future research (2014) (28)
Finding and sharing: new approaches to registries of databases and services for the biomedical sciences (2010) (27)
A 1.8kb GFAP-promoter fragment is active in specific regions of the embryonic CNS (2001) (26)
Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX (2009) (26)
The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence (2015) (25)
EVALLER: a web server for in silico assessment of potential protein allergenicity (2007) (24)
Molecular Typing of Escherichia coli O157:H7 Isolates from Swedish Cattle and Human Cases: Population Dynamics and Virulence (2014) (24)
High similarity in the microbiota of cold-water sponges of the Genus Mycale from two different geographical areas (2018) (24)
Recommendations on e-infrastructures for next-generation sequencing (2016) (24)
Genome-Guided Analysis of Physiological Capacities of Tepidanaerobacter acetatoxydans Provides Insights into Environmental Adaptations and Syntrophic Acetate Oxidation (2015) (22)
Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information (2014) (22)
SEQscoring: a tool to facilitate the interpretation of data generated with next generation sequencing technologies (2011) (20)
Genome-Guided Analysis of Clostridium ultunense and Comparative Genomics Reveal Different Strategies for Acetate Oxidation and Energy Conservation in Syntrophic Acetate-Oxidising Bacteria (2018) (20)
Differential gene expression in bovine endometrial epithelial cells after challenge with LPS; specific implications for genes involved in embryo maternal interactions (2019) (19)
EVALLER: a web server for in silico assessment of potential protein allergenicity. (2007) (17)
Comparative analysis of a BAC contig of the porcine RN region and the human transcript map: implications for the cloning of trait loci. (2001) (16)
First Genome Sequence of a Syntrophic Acetate-Oxidizing Bacterium, Tepidanaerobacter acetatoxydans Strain Re1 (2013) (16)
Escape from senescence in hybrid cell clones involves deletions of two regions located on human chromosome 1q. (1996) (16)
Report of the EMBnet AGM 2011 Workshop (2011) (15)
BBMRI - The Pan-European research infrastructure for Biobanking and Biomolecular Resources: managing resources for the future of biomedical research (2009) (15)
LPS-treatment of bovine endometrial epithelial cells causes differential DNA methylation of genes associated with inflammation and endometrial function (2020) (14)
Supporting the development of biobanks in low and medium income countries (2016) (14)
NOTCH3 and CADASIL syndrome: a genetic and structural overview (2019) (14)
Draft Genome Sequence of Clostridium ultunense Strain Esp, a Syntrophic Acetate-Oxidizing Bacterium (2013) (14)
A comprehensive model of DNA fragmentation for the preservation of High Molecular Weight DNA (2018) (14)
Workshop on laboratory protocol standards for the Molecular Methods Database. (2013) (14)
Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training (2015) (13)
Contributions of the EMERALD project to assessing and improving microarray data quality. (2011) (13)
Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN) (2020) (13)
Mosaic structure of intragenic repetitive elements in histone H1-like protein Hc2 varies within serovars of Chlamydia trachomatis (2010) (13)
Genome Sequence of a Plant-Associated Bacterium, Bacillus amyloliquefaciens Strain UCMB5036 (2013) (13)
BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences (2015) (12)
Abundance tracking by long-read nanopore sequencing of complex microbial communities in samples from 20 different biogas/wastewater plants (2019) (12)
Targeted Resequencing and Analysis of the Diamond-Blackfan Anemia Disease Locus RPS19 (2009) (11)
The beta-gal interferon assay: a new, precise and sensitive method. (1998) (11)
Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3 (2015) (11)
The eBioKit, a stand-alone educational platform for bioinformatics (2017) (11)
Genome Sequences of Two Pathogenic Streptococcus agalactiae Isolates from the One-Humped Camel Camelus dromedarius (2013) (10)
High-Throughput Sequencing and Unsupervised Analysis of Formyltetrahydrofolate Synthetase (FTHFS) Gene Amplicons to Estimate Acetogenic Community Structure (2020) (10)
Studies of plant colonisation by closely related Bacillus amyloliquefaciens biocontrol agents using strain specific quantitative PCR assays (2014) (10)
2nd Combined Working Group and Management Committee Meeting of Urine and Kidney Proteomics COST Action 29–30 March 2009, Nafplio, Greece (2009) (10)
Genome Sequence of Streptococcus agalactiae Strain 09mas018883, Isolated from a Swedish Cow (2013) (10)
The bioinformatics of viral metagenomics (2013) (10)
Genomic comparison of Escherichia coli serotype O103:H2 isolates with and without verotoxin genes: implications for risk assessment of strains commonly found in ruminant reservoirs (2016) (10)
Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel (2015) (9)
Silencing Motifs in the Clr2 Protein from Fission Yeast, Schizosaccharomyces pombe (2014) (9)
MetLab: An In Silico Experimental Design, Simulation and Analysis Tool for Viral Metagenomics Studies (2016) (9)
Modulation of phenotype and induction of irregular vessels accompany high tumorigenic potential of clonal human glioma cells xenografted to nude‐rat brain (2000) (8)
The 20th anniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community (2009) (7)
Draft genome sequence of ‘Treponema phagedenis’ strain V1, isolated from bovine digital dermatitis (2015) (6)
Galaksio, a user friendly workflow-centric front end for Galaxy (2017) (5)
Dynamics of insertion sequence element IS629 inactivation of verotoxin 2 genes in Escherichia coli O157:H7 (2017) (5)
Legal & ethical compliance when sharing biospecimen (2017) (4)
Evaluation of kallikrein 7 as a disease-causing gene for canine atopic dermatitis using microsatellite-based association mapping. (2006) (4)
The heart microbiome of insectivorous bats from Central and South Eastern Europe. (2021) (3)
A stepping stone to develop bioinformatics in Pakistan (2017) (3)
SEQAHEAD - COST Action BM1006: Next Generation Sequencing Data Analysis Network (2011) (3)
The need for standardisation in life science research - an approach to excellence and trust. (2020) (3)
Complete genome sequence of a plant associated bacterium Bacillus amyloliquefaciens strain UCMB5033 (2014) (3)
Transcriptional responses are oriented towards different components of the rearing environment in two Drosophila sibling species (2022) (2)
EMBRACE workshop “NEXT GENERATION SEQUENCING II” (2010) (2)
Factors associated with risk of preterm delivery in Tanzania: A case‐control study at Muhimbili National Hospital (2020) (2)
Genetic analysis of a Treponema phagedenis locus encoding antigenic lipoproteins with potential for antigenic variation. (2016) (2)
A primer for managing international collaboration and legal compliance in biobank based genomics (2016) (2)
EMBnet - the European Molecular Biology Network, Moving forward: 2010 & beyond (2010) (2)
Changes induced by pathogens and metabolic stress on endometrial function in cattle: possible impacts of increased inflammation on fertility (2019) (2)
The Genome of Setaria digitata: A Cattle Nematode Closely Related to Human Filarial Parasites (2020) (2)
Ebola Virus Disease and Current Therapeutic Strategies: A Review. (2021) (2)
Cross-Sectional Variations in Structure and Function of Coral Reef Microbiome With Local Anthropogenic Impacts on the Kenyan Coast of the Indian Ocean (2021) (2)
EMBnet at ISCB - South America (2012) (1)
Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information (2014) (1)
The Next NGS Challenge Conference: Data Processing and Integration (2013) (1)
MetLab: an in silico experimental design, simulation and validation tool for viral metagenomics studies (2015) (1)
Benefits and risks of barefoot harness racing in Standardbred trotters. (2020) (1)
eBioKit bioinformatics workshops in Dar es Salaam, Tanzania (2014) (1)
124 CHANGES IN GENE EXPRESSION FOLLOWING EXPOSURE OF BOVINE ENDOMETRIAL EPITHELIAL CELLS (bEEC) TO ESCHERICHIA COLI LPS; THEIR POSSIBLE EFFECT ON IMPLANTATION. (2017) (1)
Genome sequence of plant associated rhizobacterium Bacillus amyloliquefaciens strain UCMB5033 (2013) (1)
A peek into Western Indian Ocean microbial richness: a pilot for a coral microbiome study (2019) (1)
ISCB Africa ASBCB Conference on Bioinformatics and eBioKit Workshop (2011) (1)
Conserved structure and inferred evolutionary history of long terminal repeats (LTRs) (2013) (1)
Standardization and Quality Assurance in Life-Science Research - Crucially Needed or Unnecessary and Annoying Regulation? (2018) (1)
Relationship between genome and epigenome - challenges and requirements for future research (2014) (1)
Mastering Data-Intensive Collaboration and Decision Making through a Cloud Infrastructure : the Dicode EU project (2011) (1)
Viral Metagenomics – New applications for the broad-range detection of viromes in veterinary and public health settings (2013) (1)
In silico analysis of the dog genome identifies Canine Endogenous Retroviruses (CfERVs) (2009) (1)
Genome-Guided Analysis of the Syntrophic Acetate Oxidizer C. ultunense and Comparative Genomics Reveal Different Strategies for Acetate Oxidation and Energy Conservation in Syntrophic Acetate-Oxidising Bacteria (2018) (1)
Rapid whole genome sequencing investigation of a familial outbreak of E. coli O121:H19 with a sheep farm as the suspected source (2013) (1)
Ion Torrent sequencing and pipeline assembly of the first genome sequence of a mesophilic syntrophic acetate oxidizing bacterium (SAOB) (2013) (1)
Functional study of the Clr2 silencing protein (2011) (0)
Complete genome sequence of Methanoculleus bourgensis strain MAB1, the syntrophic partner of mesophilic acetate-oxidising bacteria (SAOB) (2016) (0)
Metagenomics sample preparation and sequencing. (2013) (0)
Biosciences Nairobi-Spread of tetracycline resistance gene tetM via TN916-like elements in East African camel GBS (2013) (0)
Comparison of Common Adverse Neonatal Outcomes Among Preterm and Term Infants at the National Referral Hospital in Tanzania: A Case-Control Study (2021) (0)
Standardisation in life-science research - Making the case for harmonization to improve communication and sharing of data amongst researchers (2018) (0)
The need for standardisation in life science research - an approach to excellence and trust. (2021) (0)
2013 Annual General Meeting: Executive Board Report (2013) (0)
Train-the-Trainer: GOBLET’s initiative to increase the provision of bioinformatics training in NGS (2016) (0)
COST Action BM 1006 (SeqAhead): MC BUSINESS MEETING AND SCIENTIFIC MEETING (2012) (0)
Analysis of the upstream region of the porcine Dominant white/KIT locus (2006) (0)
2015 Annual General Meeting – Executive Board Report (2015) (0)
Scientific Meeting 2014 "NGS Data after the Gold Rush" & "Management Committee" Meeting, Norwich, UK (2014) (0)
GeneFinder: "in silico" positional cloning of trait genes (2010) (0)
The identification and classification of endogenous retroviruses in the horse genome (2018) (0)
‘Next NGS Challenge – Data Processing and Integration’ Conference – Conference report. (2013) (0)
LPS-treatment of bovine endometrial epithelial cells causes differential DNA methylation of genes associated with inflammation and endometrial function (2020) (0)
Gene Networks and Pathways Involved in LPS-Induced Proliferative Response of Bovine Endometrial Epithelial Cells (2022) (0)
Data mining of the dog genome reveals novel Canine Endogenous Retroviruses(CfERVs) (2010) (0)
@bullet Browsing and Searching Gene Ontology Resources Using Amigo @bullet Gopubmed: Answering Biomedical Questions @bullet the Goa@ebi Resource and More ... 2 Embnet.news Editorial Board: Embnet Conference 2008: 20 Th Anniversary Celebration " Leading Applications and Technologies in Bioinformatics (2008) (0)
Implementation of proteomic biomarkers: making it work PERSPECTIVE (2012) (0)
Ten Simples Rules on How to Organise a Bioinformatics Hackathon (2021) (0)
Draft genome sequence of ‘Treponema phagedenis’ strain V1, isolated from bovine digital dermatitis (2015) (0)
Studies of plant colonisation by closely related Bacillus amyloliquefaciens biocontrol agents using strain specific quantitative PCR assays (2014) (0)
"Biobanks, biomolecular resources and bioinformatics for health care and medical research in Europe" (2008) (0)
Editorial (2020) (0)
Bioinformatics platform: Harnessing bioinformatics for food security and sustainable development (2016) (0)
Contents continued (2001) (0)
Editorialis another issue of EMBnet.news with plenty (2008) (0)
2016 EMBnet Annual General Meeting – Executive Board Report (2017) (0)
COST Action BM1006 (SeqAhead) closing conference "Next Generation Sequencing: a look into the future” (2015) (0)
NGS as a tool for investigating spread of zoonotic bacteria: dealing with source and outbreak genetic variation in a spatio-temporal context (2015) (0)
2014 Annual General Meeting – Executive Board Report (2015) (0)
Molecular Ecology of Coral Reef Microorganisms in the Western Indian Ocean coast of Kenya (2020) (0)
Studies on glial fibrillary acidic protein (GFAP) in human glioma cells in vitro and in vivo (1994) (0)
Genome-Wide Association Mapping of Canine Glioma Followed by Targeted Massive Parallel Sequencing Identifies CAMKK2, P2RX7 and DENR as Novel Candidate Genes for Canine and Human Glioma (2015) (0)
Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3 (2015) (0)
Integration and analysis of multi-type high-throughput data for biomolecular knowledge discovery (2012) (0)
The EMBnet International Conference 2020: Bioinformatics Approaches to Precision Research (2021) (0)
Galaksio, a more user friendly interface for Galaxy using workflows (2018) (0)
The heart microbiome of insectivorous bats from Central and South Eastern Europe (2020) (0)
Transcriptional responses are oriented towards different components of the rearing environment in two Drosophila sibling species (2022) (0)
Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel (2015) (0)
Brachyspira suanatina sp. nov., an enteropathogenic intestinal spirochaete isolated from pigs and mallards: genomic and phenotypic characteristics (2015) (0)
Abstracts for the Tenth International Conference on Brain Tumour Research and Therapy (2005) (0)
Report of the EMBnet AGM 2010 Workshop (2010) (0)
Joint meeting of EMBnet and RIB (2007) (0)
Experiences with workflows for automating data-intensive bioinformatics (2015) (0)
The eBioKit, a stand-alone educational bioinformatics platform (2016) (0)
The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence (2015) (0)

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Erik Bongcam-Rudloff's Published Works

Published Works

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What Schools Are Affiliated With Erik Bongcam-Rudloff?

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