Gaston Gonnet
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Gaston Gonnet's Degrees
- Bachelors Mathematics University of Buenos Aires
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(Suggest an Edit or Addition)According to Wikipedia, Gaston H. Gonnet is a Uruguayan Canadian computer scientist and entrepreneur. He is best known for his contributions to the Maple computer algebra system and the creation of a digital version of the Oxford English Dictionary.
Gaston Gonnet's Published Works
Published Works
- On the LambertW function (1996) (3719)
- Exhaustive matching of the entire protein sequence database. (1992) (854)
- Maple V Language Reference Manual (1993) (585)
- Protein identification by mass profile fingerprinting. (1993) (542)
- Handbook Of Algorithms And Data Structures (1984) (539)
- A new approach to text searching (1989) (433)
- Maple V Library Reference Manual (1992) (390)
- New Indices for Text: Pat Trees and Pat Arrays (1992) (364)
- A new approach to text searching (1992) (362)
- A Role for Codon Order in Translation Dynamics (2010) (331)
- A mechanism for asymmetric segregation of age during yeast budding (2008) (319)
- Expected Length of the Longest Probe Sequence in Hash Code Searching (1981) (269)
- First Leaves: A Tutorial Introduction to Maple V (1992) (254)
- OMA 2011: orthology inference among 1000 complete genomes (2010) (230)
- Empirical and structural models for insertions and deletions in the divergent evolution of proteins. (1993) (217)
- The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements (2014) (209)
- The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces (2017) (207)
- Handbook of algorithms and data structures: in Pascal and C (2nd ed.) (1991) (177)
- Amino acid substitution during functionally constrained divergent evolution of protein sequences. (1994) (168)
- Fast text searching for regular expressions or automaton searching on tries (1996) (151)
- Algorithm of OMA for large-scale orthology inference (2008) (147)
- Mind Your Grammar: a New Approach to Modelling Text (1987) (142)
- Inferring Hierarchical Orthologous Groups from Orthologous Gene Pairs (2013) (141)
- ALF—A Simulation Framework for Genome Evolution (2011) (134)
- OMA Browser - Exploring orthologous relations across 352 complete genomes (2007) (129)
- Estimates of Positive Darwinian Selection Are Inflated by Errors in Sequencing, Annotation, and Alignment (2009) (120)
- Heaps on Heaps (1982) (115)
- Darwin v. 2.0: an interpreted computer language for the biosciences (2000) (113)
- Scientific Computation (2009) (112)
- Protein identification in DNA databases by peptide mass fingerprinting (1994) (109)
- The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report (2016) (105)
- A global metagenomic map of urban microbiomes and antimicrobial resistance (2021) (102)
- Using traveling salesman problem algorithms for evolutionary tree construction (2000) (96)
- On Lambert's W Function (1993) (93)
- Empirical codon substitution matrix (2005) (90)
- Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters (2019) (83)
- OMA, A Comprehensive, Automated Project for the Identification of Orthologs from Complete Genome Data: Introduction and First Achievements (2005) (78)
- A Phylogenomic Study of Human, Dog, and Mouse (2006) (74)
- Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits (2006) (72)
- An analysis of simultaneous variation in protein structures. (1997) (71)
- Exegesis of Self-Organizing Linear Search (1981) (68)
- Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference (2017) (68)
- LATIN 2000: Theoretical Informatics: 4th Latin American Symposium, Punta del Este, Uruguay, April 10-14, 2000 Proceedings (2000) (66)
- Advances in Computational Mathematics (1996) (65)
- A Tutorial Introduction to Maple (1986) (61)
- GCDHEU: Heuristic Polynomial GCD Algorithm Based On Integer GCD Computation (1984) (59)
- The design of maple: A compact, portable and powerful computer algebra system (1983) (56)
- The Theory of Fringe Analysis and Its Application to 2-3 Trees and B-Trees (1982) (55)
- Evaluation Measures of Multiple Sequence Alignments (2000) (52)
- The Impact of Gene Duplication, Insertion, Deletion, Lateral Gene Transfer and Sequencing Error on Orthology Inference: A Simulation Study (2013) (49)
- Analysis of amino acid substitution during divergent evolution: the 400 by 400 dipeptide substitution matrix. (1994) (48)
- The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases (2015) (47)
- Analytic variations on quadtrees (1993) (47)
- An analysis of the helix‐to‐strand transition between peptides with identical sequence (2000) (46)
- Toward self-organizing linear search (1979) (44)
- An Analysis of the Karp-Rabin String Matching Algorithm (1990) (43)
- The Analysis of Linear Probing Sort by the Use of a New Mathematical Transform (1984) (40)
- A fast algorithm on average for all-against-all sequence matching (1999) (40)
- Heaps applied to event driven mechanisms (1976) (40)
- Algorithm of OMA for large-scale orthology inference (2009) (39)
- Fast String Matching with Mismatches (1994) (39)
- The nitrogenase MoFe protein (1993) (38)
- Efficient Ordering of Hash Tables (1979) (36)
- Unstructured data bases or very efficient text searching (1983) (36)
- Limitations of codon adaptation index and other coding DNA‐based features for prediction of protein expression in Saccharomyces cerevisiae (2004) (35)
- Lexicographical Indices for Text: Inverted files vs. PAT trees (1991) (35)
- External hashing with limited internal storage (1988) (34)
- 2 Reading the Palimpsest: Contemporary Biochemical Data and the RNA World (1993) (34)
- An algorithmic and complexity analysis of interpolation search (2004) (34)
- Differential Equations: An Introduction with Mathematica® (1995) (32)
- Computational biochemistry research at ETH (1991) (31)
- Analysis of Boyer-Moore-type string searching algorithms (1990) (30)
- Balancing binary trees by internal path reduction (1983) (29)
- Efficient Text Searching of Regular Expressions (1989) (29)
- Maple User''s Guide (1985) (29)
- Scoring functions for transcription factor binding site prediction (2005) (27)
- Handbook of Algorithms (1984) (27)
- A predicted consensus structure for the N‐Terminal fragment of the heat shock protein HSP90 family (1997) (27)
- DLIGHT - Lateral Gene Transfer Detection Using Pairwise Evolutionary Distances in a Statistical Framework (2008) (25)
- The analysis of multidimensional searching in quad-trees (1991) (24)
- Probabilistic Ancestral Sequences and Multiple Alignments (1996) (24)
- Determining equivalence of expressions in random polynomial time (1984) (24)
- Probing protein function using a combination of gene knockout and proteome analysis by mass spectrometry (1997) (23)
- On the Costs of Self-Stabilization (1987) (23)
- A New Algorithm for Computing Symbolic Limits Using Hierarchical Series (1988) (22)
- New Algorithms for the Computation of Evolutionary Phylogenetic Trees (1994) (19)
- Near optimal multiple sequence alignments using a traveling salesman problem approach (1999) (19)
- The maple symbolic computation system (1983) (19)
- New results for random determination of equivalence of expressions (1986) (18)
- Macdonald’s constant term conjectures for exceptional root systems (1991) (18)
- Efficient Text Searching of Regular Expressions (Extended Abstract) (1989) (16)
- An Assume Facility for CAS, with a Sample Implementation for Maple (1992) (15)
- The analysis of an improved hashing technique (1977) (14)
- SynPAM—A Distance Measure Based on Synonymous Codon Substitutions (2007) (14)
- Heuristic Methods for Operations With Algebraic Numbers. (Extended Abstract) (1988) (14)
- A combinatorial distance-constraint approach to predicting protein tertiary models from known secondary structure. (1998) (13)
- Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences (2006) (13)
- Cell fingerprinting: An approach to classifying cells according to mass profiles of digests of protein extracts (2001) (13)
- External hasing with limited internal storage (1982) (13)
- Surprising results on phylogenetic tree building methods based on molecular sequences (2012) (12)
- Automatic problem-specific hyperparameter optimization and model selection for supervised machine learning (2015) (11)
- Text dominated databases, theory practice and experience (abstract) (1994) (11)
- Predicting the conformation of proteins from sequences. Progress and future progress. (1994) (11)
- Measures of Codon Bias in Yeast, the tRNA Pairing Index and Possible DNA Repair Mechanisms (2006) (10)
- Tutorial: Text Dominated Databases, Theory Practice and Experience. (1994) (10)
- A constructive approach to the design of algorithms and their data structures (1983) (10)
- An algorithm for the identification of proteins using peptides with ragged N‐ or C‐termini generated by sequential endo‐ and exopeptidase digestions (1998) (10)
- Notes on the Derivation of Asymptotic Expressions from Summations (1978) (9)
- On the structure of zero finders (1977) (9)
- Some string matching problems from Bioinformatics which still need better solutions (2004) (9)
- Expected Behaviour Analysis of AVL Trees (1990) (9)
- Signature functions for algebraic numbers (1994) (8)
- A word in your protein (1993) (8)
- An algebra of properties (1991) (8)
- A Proof for the Two Parameter Q-Cases of the Macdonald-Morris Constant Term Root System Conjecture for S(F4) and S(F4) via Zeilberger's Method (1992) (7)
- Direct dynamic structures for some line segment problems (1983) (7)
- The Interpolation-Sequential Search Algorithm (1977) (7)
- Limit computation in computer algebra (1992) (7)
- An implementation of operators for symbolic algebra systems (1986) (6)
- On Lambert ' s W (1993) (6)
- A Dimensionless Fit Measure for Phylogenetic Distance Trees (2005) (6)
- On Boyer-Moore automata (1994) (6)
- Synonymous Codon Substitution Matrices (2006) (5)
- Open-Addressing Hashing with Unequal-Probability Keys (1980) (5)
- The Maple Library (1991) (5)
- Analysis of Closed Queuing Networks with Periodic Servers (1979) (4)
- On the Lambert (1996) (4)
- Annals of Mathematics and Artificial Intelligence (2004) (4)
- A linear probing sort and its analysis(Preliminary Draft) (1981) (4)
- Analytic Variations on Quad{trees (1991) (4)
- Computer algebra in the undergraduate mathematics classroom (1986) (4)
- The OMA orthology database in 2015 (2015) (4)
- Probabilistic ancestral sequences based on the Markovian model of evolution: algorithms and applications (2007) (4)
- Improved bounds for the expected behaviour of AVL trees (1992) (4)
- Height-Ratio-Balanced Trees (1983) (4)
- Uncertainty in ancient phylogenies (1995) (3)
- Scientific Computation: Phylogenetic tree construction (2009) (3)
- ON THE DESIGN AND PERFORMANCE OF THE MAPLE SYSTEM * (2005) (3)
- Fringe Analysis for Extquick: An in Situ Distributive External Sorting Algorithm (1991) (3)
- Gap heuristics and tree construction using gaps (1999) (3)
- Proceedings of the 4th Latin American Symposium on Theoretical Informatics (2000) (3)
- Examples of Maple applied to problems from the American Mathematical Monthly (1988) (3)
- Proceedings of the ACM-SIGSAM 1989 International Symposium on Symbolic and Algebraic Computation, ISSAC '89, Portland, Oregon, USA, July 17-19, 1989 (1989) (3)
- Algebraic manipulation: systems (1991) (2)
- Phylogenetic Tree Building Methods (2009) (2)
- A New Approach to Text Searching (correction) (1989) (2)
- Solution of a general system of equations (1983) (2)
- City-wide metagenomics uncover antibiotic resistance reservoirs in urban beach and sewage waters (2018) (2)
- Average Case Analysis of Algorithms using Matrix Recurrences (1991) (2)
- A Repetition Test for Pseudo-Random Number Generators (2006) (2)
- The Analysis of an Inproved Symmetric Binary B-Tree Algorithm (1985) (2)
- Preface : Annals of mathematics and artificial intelligence 2003 (2003) (2)
- Interactive Use of Maple (1992) (2)
- The Maple Programming Language (1992) (1)
- A Study of Iteration Formulas for Root Finding, Where Mathematics, Computer Algebra and Software Engineering Meet (2001) (1)
- First Release of the Bacterial Biobank of the Urban Environment (BBUE) (2018) (1)
- Scientific Computation: Contents (2009) (1)
- Alignment of nucleotide with peptide sequences (1992) (1)
- Optimal Scoring Matrices for Estimating Distances Between Aligned Sequences (1999) (1)
- CLEI electronic journal (2011) (1)
- A Role for Codon Order in Translation Dynamics (2010) (1)
- Scientific Computation: List of abbreviations (2009) (1)
- APredicted Consensus Structure for the N-Terminal Fragment of the Heat Shock Protein HSP 90 Family (1997) (1)
- Phylogenetic trees based on k-nucleotide frequencies (2004) (1)
- A short note on convergence near a high order zero (1976) (1)
- Statements and Expressions (1991) (1)
- Partial Inverse Heuristic for the Approximate Solution of Non-linear Equations (1999) (1)
- Efficient Two-dimensional Searching (1992) (1)
- Overview of the Maple Library (1991) (0)
- Scientific Computation: Online resources (2009) (0)
- Teaching mathematics across the Internet (2001) (0)
- The most significant Codon Bias in Yeast (2003) (0)
- Measuring and improving performance (1992) (0)
- Packages for Applied Mathematics (1991) (0)
- Coding benchmark for Utopia84 (1981) (0)
- On the Lambert W Function (2021) (0)
- The tPI (tRNA Pairing Index), a Mathematical Measure of Repetition in a (Biological) Sequence (2004) (0)
- Scientific Computation: Determination of the accurate location of an aircraft (2009) (0)
- A Some Remarks on Impli- Citization Summary and Future Directions (1992) (0)
- Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters (2019) (0)
- Packages for Geometry (1991) (0)
- Toward Self-Organizing Linear Search (Preliminary Draught) (1979) (0)
- Scientific Computation: Secondary structure prediction with linear programming (LP) (2009) (0)
- Global access to Maple information (1992) (0)
- Recognizing proteins by weight of their digested parts (2007) (0)
- Scientific Computation: Secondary structure prediction using least squares and best basis (2009) (0)
- Mathematics and Computer Science Serving/Impacting Bioinformatics (2009) (0)
- Less Simple Maple (1992) (0)
- Internal Representation and Manipulation (1991) (0)
- EXACTLY 20 YEARS OF MAPLE (2000) (0)
- Packages for Discrete Mathematics (1991) (0)
- Scientific Computation: Secondary structure prediction with learning methods (nearest neighbors) (2009) (0)
- Non linear least squares: finding the most accurate location of an aircraft (1998) (0)
- Modelling and Simulation Spring 2015 (2015) (0)
- ECCB 2012 Organization (2012) (0)
- Wanna Buy an Algorithm? Cheap! or: Algorithms for Text Searching Which Could Have Commercial Value (Abstract) (1994) (0)
- Scientific Computation: When to replace equipment (2009) (0)
- Transformation Rules Approximate Patterns and Queries 7.1 Complexity (1995) (0)
- The Shift-add Approach to String Matching (1992) (0)
- Response : Computer Speed and Sequence Comparison (1992) (0)
- The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report (2016) (0)
- The tRNA Pairing Index (2003) (0)
- String Matching Problems from Bioinformatics Which Still Need Better Solutions (Extended Abstract) (2002) (0)
- Arrays and Tables (1991) (0)
- Scientific Computation: Secondary structure prediction using least squares and singular value decomposition (2009) (0)
- Phylogenetic tree of the "Nigerian Prince" e-mail scam (2005) (0)
- ALF - A Simulation Framework for Genome Evolution Research Article (2011) (0)
- Database Storage Structures Research at the University of Waterloo (1982) (0)
- Scientific Computation: Methods for function minimization (2009) (0)
- Surprising results on phylogenetic tree building methods based on molecular sequences (2012) (0)
- Finding orthologous sequences and building a phylogenetic tree (2003) (0)
- The dynamic programming algorithm as a finite automation (1991) (0)
- Scientific Computation: Preface (2009) (0)
- All-Against-All Sequence MatchingPreliminary (2007) (0)
- CHAPTER 5 Probabilistic ancestral sequences based on the Markovian model of evolution : algorithms and applications (2007) (0)
- Scientific Computation: Stock market prediction (2009) (0)
- Computer Algebra (1983) (0)
- Structure Prediction with Combinatorial Distance Constraints (1997) (0)
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