John Coffin

Q: What Schools Are Affiliated With John Coffin

John Coffin is affiliated with the following schools: University of California, Berkeley, University of Oxford, Tufts University, University of Alberta, Johns Hopkins University, University of Pittsburgh, University of California, San Francisco, University of Zurich, Wesleyan University, Harvard University

John Coffin 's AcademicInfluence.com Rankings

John Coffin

Biology

#2266

World Rank

#3621

Historical Rank

Virology

#117

World Rank

#121

Historical Rank

Microbiology

#187

World Rank

#219

Historical Rank

biology Degrees

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Biology

John Coffin 's Degrees

PhD Virology University of California, Berkeley
Doctorate Medicine Harvard University

Why Is John Coffin Influential?

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According to Wikipedia, John Coffin is an American virologist. Born in Boston, Massachusetts, raised in Schenectady, New York, Coffin is a professor of Molecular Biology and Microbiology at Tufts University in Boston. He is also the former director of the HIV Dynamics and Replication Program of the National Cancer Institute and serves as special advisor to the director of the Center for Cancer Research at NCI. He is a member of the National Academy of Sciences and a recipient of American Cancer Society professorship. He has advised policy committees at the national level regarding retrovirus-related matters. Coffin was programme committee chair for the 18th Conference on Retroviruses and Opportunistic Infections in 2011.

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John Coffin 's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Specific HIV integration sites are linked to clonal expansion and persistence of infected cells (2014) (671)
Low-level viremia persists for at least 7 years in patients on suppressive antiretroviral therapy (2008) (639)
Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome (2004) (617)
New Real-Time Reverse Transcriptase-Initiated PCR Assay with Single-Copy Sensitivity for Human Immunodeficiency Virus Type 1 RNA in Plasma (2003) (600)
Lytic granule loading of CD8+ T cells is required for HIV-infected cell elimination associated with immune control. (2008) (552)
Structure, replication, and recombination of retrovirus genomes: some unifying hypotheses. (1979) (516)
Upregulation of CTLA-4 by HIV-specific CD4+ T cells correlates with disease progression and defines a reversible immune dysfunction (2007) (502)
Multiple, Linked Human Immunodeficiency Virus Type 1 Drug Resistance Mutations in Treatment-Experienced Patients Are Missed by Standard Genotype Analysis (2005) (502)
Effects of retroviruses on host genome function. (2008) (449)
Treatment intensification does not reduce residual HIV-1 viremia in patients on highly active antiretroviral therapy (2009) (443)
Depletion of latent HIV-1 infection in vivo: a proof-of-concept study (2005) (420)
Flexible use of nuclear import pathways by HIV-1. (2010) (404)
Endogenous non-retroviral RNA virus elements in mammalian genomes (2010) (401)
Human immunodeficiency viruses. (1986) (346)
ART Suppresses Plasma HIV-1 RNA to a Stable Set Point Predicted by Pretherapy Viremia (2007) (336)
Standardized and simplified nomenclature for proteins common to all retroviruses (1988) (326)
Identification, characterization, and comparative genomic distribution of the HERV-K (HML-2) group of human endogenous retroviruses (2011) (318)
The Effect of Raltegravir Intensification on Low-level Residual Viremia in HIV-Infected Patients on Antiretroviral Therapy: A Randomized Controlled Trial (2010) (307)
Linkage of Mls genes to endogenous mammary tumour viruses of inbred mice (1991) (306)
Clonally expanded CD4+ T cells can produce infectious HIV-1 in vivo (2016) (283)
Genetic variation in AIDS viruses (1986) (266)
What to call the AIDS virus? (1986) (262)
Highly preferred targets for retrovirus integration (1988) (249)
The four classes of endogenous murine leukemia virus: structural relationships and potential for recombination (1987) (242)
Recombinant Origin of the Retrovirus XMRV (2011) (238)
Molecular biology of tumor viruses. RNA tumor viruses. (1982) (238)
HIV-1 expression within resting CD4+ T cells after multiple doses of vorinostat. (2014) (229)
Expression of leukemogenic recombinant viruses associated with a recessive gene in HRS/J mice (1980) (228)
Short-course raltegravir intensification does not reduce persistent low-level viremia in patients with HIV-1 suppression during receipt of combination antiretroviral therapy. (2010) (224)
Genetic diversity and evolution of retroviruses. (1992) (223)
The solitary wave of asexual evolution (2003) (223)
Quantification of HIV-1 latency reversal in resting CD4+ T cells from patients on suppressive antiretroviral therapy (2014) (217)
Immediate antiviral therapy appears to restrict resting CD4+ cell HIV-1 infection without accelerating the decay of latent infection (2012) (216)
Localization of a retroviral element within the rd gene coding for the beta subunit of cGMP phosphodiesterase. (1993) (213)
Role of endogenous retroviruses as mutagens: The hairless mutation of mice (1988) (212)
Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution (2001) (212)
Constructing primate phylogenies from ancient retrovirus sequences. (1999) (211)
A linkage map of endogenous murine leukemia proviruses. (1990) (202)
Persistent low-level viremia in HIV-1 elite controllers and relationship to immunologic parameters. (2009) (201)
High efficiency of HIV-1 genomic RNA packaging and heterozygote formation revealed by single virion analysis (2009) (200)
Human immunodeficiency virus drug therapy and virus load (1997) (199)
Lack of Detectable HIV-1 Molecular Evolution during Suppressive Antiretroviral Therapy (2014) (198)
Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: implications for human and viral evolution. (2004) (195)
Discovery of unfixed endogenous retrovirus insertions in diverse human populations (2016) (194)
Proviruses with identical sequences comprise a large fraction of the replication-competent HIV reservoir (2017) (189)
Majority of CD4+ T cells from peripheral blood of HIV-1–infected individuals contain only one HIV DNA molecule (2011) (187)
Genes for epilepsy mapped in the mouse. (1991) (184)
Proposal for Naming Host Cell-Derived Inserts in Retrovirus Genomes (1981) (183)
Virological events leading to spontaneous AKR thymomas (1991) (179)
Bacterial beta-galactosidase as a marker of Rous sarcoma virus gene expression and replication (1985) (179)
Valproic acid without intensified antiviral therapy has limited impact on persistent HIV infection of resting CD4+ T cells (2008) (175)
Human Immunodeficiency Virus Type 1 Population Genetics and Adaptation in Newly Infected Individuals (2008) (175)
Structure and expression of the hairless gene of mice. (1994) (174)
Transition between Stochastic Evolution and Deterministic Evolution in the Presence of Selection: General Theory and Application to Virology (2001) (173)
Symmetrical base preferences surrounding HIV-1, avian sarcoma/leukosis virus, and murine leukemia virus integration sites (2005) (167)
Clinical Trial of the Anti-PD-L1 Antibody BMS-936559 in HIV-1 Infected Participants on Suppressive Antiretroviral Therapy (2017) (166)
Structure and Classification of Retroviruses (1992) (165)
Antiretroviral Intensification and Valproic Acid Lack Sustained Effect on Residual HIV-1 Viremia or Resting CD4+ Cell Infection (2010) (155)
Persistence of nevirapine-resistant HIV-1 in women after single-dose nevirapine therapy for prevention of maternal-to-fetal HIV-1 transmission. (2006) (154)
Genetic analysis of endogenous xenotropic murine leukemia viruses: association with two common mouse mutations and the viral restriction locus Fv-1 (1989) (153)
Determinants for receptor interaction and cell killing on the avian retrovirus glycoprotein gp85 (1986) (149)
B-108 Specific HIV integration sites are linked to clonal expansion and persistence of infected cells (2016) (148)
Likely Role of APOBEC3G-Mediated G-to-A Mutations in HIV-1 Evolution and Drug Resistance (2009) (146)
Genetic identification of endogenous polytropic proviruses by using recombinant inbred mice (1989) (141)
A physical map of the Rous sarcoma virus genome. (1976) (141)
Mechanism for nucleoside analog-mediated abrogation of HIV-1 replication: balance between RNase H activity and nucleotide excision. (2005) (141)
HIV pathogenesis: dynamics and genetics of viral populations and infected cells. (2013) (141)
Mutations in the connection domain of HIV-1 reverse transcriptase increase 3′-azido-3′-deoxythymidine resistance (2007) (138)
Contamination of human DNA samples with mouse DNA can lead to false detection of XMRV-like sequences (2010) (137)
Linkage disequilibrium test implies a large effective population number for HIV in vivo. (1999) (136)
The nucleotide sequence complexity of avian tumor virus RNA. (1974) (135)
Distribution of targets for avian retrovirus DNA integration in vivo. (1994) (132)
Blinded, Multicenter Comparison of Methods To Detect a Drug-Resistant Mutant of Human Immunodeficiency Virus Type 1 at Low Frequency (2006) (125)
Multifactorial inheritance of neural tube defects: localization of the major gene and recognition of modifiers in ct mutant mice (1994) (124)
Role of APOBEC3 in Genetic Diversity among Endogenous Murine Leukemia Viruses (2007) (123)
A robust measure of HIV-1 population turnover within chronically infected individuals. (2004) (122)
Single-cell analysis of HIV-1 transcriptional activity reveals expression of proviruses in expanded clones during ART (2017) (120)
Mouse DNA contamination in human tissue tested for XMRV (2010) (119)
Molecular basis of host range variation in avian retroviruses (1985) (118)
Report of the NIH Panel To Define Principles of Therapy of HIV Infection* (1998) (117)
Mechanism of transduction by retroviruses. (1992) (116)
Recombinants between endogenous and exogenous avian tumor viruses: role of the C region and other portions of the genome in the control of replication and transformation (1980) (114)
Single Cell Analysis of Lymph Node Tissue from HIV-1 Infected Patients Reveals that the Majority of CD4+ T-cells Contain One HIV-1 DNA Molecule (2013) (113)
HIV-1 pathogenesis: the virus. (2012) (112)
Low frequency nonnucleoside reverse-transcriptase inhibitor-resistant variants contribute to failure of efavirenz-containing regimens in treatment- experienced patients. (2010) (111)
Origin of Rebound Plasma HIV Includes Cells with Identical Proviruses That Are Transcriptionally Active before Stopping of Antiretroviral Therapy (2015) (110)
HIV reservoirs and the possibility of a cure for HIV infection (2011) (109)
HIV Populations Are Large and Accumulate High Genetic Diversity in a Nonlinear Fashion (2013) (109)
The Interactions of Retroviruses and their Hosts (1997) (107)
Selection and persistence of non-nucleoside reverse transcriptase inhibitor-resistant HIV-1 in patients starting and stopping non-nucleoside therapy (2006) (104)
Nonrandom HIV-1 infection and double infection via direct and cell-mediated pathways. (2004) (103)
Analysis of 454 sequencing error rate, error sources, and artifact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA (2013) (103)
Oligonucleotide fingerprints of RNA species obtained from rhabdoviruses belonging to the vesicular stomatitis virus subgroup (1977) (102)
Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection (2011) (100)
HIV-1 Continues To Replicate and Evolve in Patients with Natural Control of HIV Infection (2010) (96)
Failure to Confirm XMRV/MLVs in the Blood of Patients with Chronic Fatigue Syndrome: A Multi-Laboratory Study (2011) (96)
Human Endogenous Retroviral Elements as Indicators of Ectopic Recombination Events in the Primate Genome (2005) (94)
Improved Single-Copy Assays for Quantification of Persistent HIV-1 Viremia in Patients on Suppressive Antiretroviral Therapy (2014) (93)
At least two regions of the viral genome determine the oncogenic potential of avian leukosis viruses. (1982) (92)
Clonal Sequences Recovered from Plasma from Patients with Residual HIV-1 Viremia and on Intensified Antiretroviral Therapy Are Identical to Replicating Viral RNAs Recovered from Circulating Resting CD4+ T Cells (2011) (91)
Frequent polymorphism at drug resistance sites in HIV-1 protease and reverse transcriptase (2008) (91)
Isotype switching of an immunoglobulin heavy chain transgene occurs by DNA recombination between different chromosomes (1990) (91)
Polymorphism of Murine Endogenous Proviruses Revealed by Using Virus Class-Specific Oligonucleotide Probes (1988) (89)
Nonrandom integration of retroviral DNA in vitro: effect of CpG methylation. (1992) (87)
Mls-1 is encoded by the long terminal repeat open reading frame of the mouse mammary tumor provirus Mtv-7. (1992) (84)
HIV viral dynamics. (1996) (83)
Evolution of Human Immunodeficiency Virus Under Selection and Weak Recombination (2005) (83)
Differential transcription from the long terminal repeats of integrated avian leukosis virus DNA (1986) (82)
Relationship of avian retrovirus DNA synthesis to integration in vitro (1991) (77)
HIV-1 in lymph nodes is maintained by cellular proliferation during antiretroviral therapy. (2019) (76)
Genetic alterations of RNA leukemia viruses associated with the development of spontaneous thymic leukemia in AKR/J mice (1982) (75)
Nomenclature for endogenous retrovirus (ERV) loci (2018) (75)
Interactions of Murine APOBEC3 and Human APOBEC3G with Murine Leukemia Viruses (2008) (71)
Role of Methylation in the Induced and Spontaneous Expression of the Avian Endogenous Virus ev-1: DNA Structure and Gene Products (1982) (70)
Comparison of standard PCR/cloning to single genome sequencing for analysis of HIV-1 populations. (2010) (70)
Structure of the retroviral genome (1982) (70)
The dangers of xenotransplantation (1995) (69)
In Vitro Characterization of a Simian Immunodeficiency Virus-Human Immunodeficiency Virus (HIV) Chimera Expressing HIV Type 1 Reverse Transcriptase To Study Antiviral Resistance in Pigtail Macaques (2004) (69)
Combined HIV-1 sequence and integration site analysis informs viral dynamics and allows reconstruction of replicating viral ancestors (2019) (68)
Nucleotide sequence relationships between the genomes of an endogenous and an exogenous avian tumor virus (1978) (67)
Ortervirales: New Virus Order Unifying Five Families of Reverse-Transcribing Viruses (2018) (67)
Plasma Viral Load, CD4+ Cell Counts, and HIV-1 Production by Cells (1996) (67)
HIV-1 Infection Leads to Increased Transcription of Human Endogenous Retrovirus HERV-K (HML-2) Proviruses In Vivo but Not to Increased Virion Production (2014) (65)
Comparison of Rous Sarcoma Virus-Specific Deoxyribonucleic Acid Polymerases in Virions of Rous Sarcoma Virus and in Rous Sarcoma Virus-Infected Chicken Cells (1971) (65)
Mapping of the motor neuron degeneration (Mnd) gene, a mouse model of amyotrophic lateral sclerosis (ALS). (1992) (64)
The genome of Uukuniemi virus consists of three unique RNA segments (1977) (64)
Subgroup-E avian-leukosis-virus-associated disease in chickens. (1980) (63)
No evidence of HIV replication in children on antiretroviral therapy. (2017) (62)
Relationship between retroviral DNA-integration-site selection and host cell transcription. (2005) (62)
Relationship between Retroviral DNA Integration and Gene Expression (2000) (62)
Quantitative Determination and Location of Newly Synthesized Virus-Specific Ribonucleic Acid in Chicken Cells Infected with Rous Sarcoma Virus (1973) (61)
Efficient packaging of readthrough RNA in ALV: implications for oncogene transduction. (1987) (61)
Role of low-frequency HIV-1 variants in failure of nevirapine-containing antiviral therapy in women previously exposed to single-dose nevirapine (2011) (61)
HIV-1 reverse transcriptase connection subdomain mutations reduce template RNA degradation and enhance AZT excision (2008) (60)
A Multicenter Blinded Analysis Indicates No Association between Chronic Fatigue Syndrome/Myalgic Encephalomyelitis and either Xenotropic Murine Leukemia Virus-Related Virus or Polytropic Murine Leukemia Virus (2012) (59)
Regimen simplification to atazanavir-ritonavir alone as maintenance antiretroviral therapy: final 48-week clinical and virologic outcomes. (2009) (59)
A proof-of-concept study of short-cycle intermittent antiretroviral therapy with a once-daily regimen of didanosine, lamivudine, and efavirenz for the treatment of chronic HIV infection. (2004) (59)
VARIATION IN AVIAN RETROVIRUS GENOMES * (1980) (57)
In vitro synthesis of Rous sarcoma virus-specific RNA is catalyzed by a DNA-dependent RNA polymerase. (1974) (57)
Efficient autointegration of avian retrovirus DNA in vitro (1990) (57)
What Integration Sites Tell Us about HIV Persistence. (2016) (57)
Structure of the genome of moloney murine leukemia virus: a terminally redundant sequence (1978) (56)
Differential Expression of HERV-K (HML-2) Proviruses in Cells and Virions of the Teratocarcinoma Cell Line Tera-1 (2015) (54)
Terminal redundancy and the origin of replication of Rous sarcoma virus RNA. (1977) (54)
HIV-1 Viremia Not Suppressible By Antiretroviral Therapy Can Originate from Large T-Cell Clones Producing Infectious Virus (2020) (54)
Clones of infected cells arise early in HIV-infected individuals. (2019) (54)
Synthesis, Assembly, and Processing of Viral Proteins -- Retroviruses (1997) (52)
A New Virus for Old Diseases? (2009) (52)
Polymorphism of murine endogenous proviruses revealed by using virus class-specific oligonucleotide probes (1988) (51)
Suppression of Viremia and Evolution of Human Immunodeficiency Virus Type 1 Drug Resistance in a Macaque Model for Antiretroviral Therapy (2007) (51)
Ongoing HIV Replication During ART Reconsidered (2017) (49)
Structures of Endogenous Nonecotropic Murine Leukemia Virus (MLV) Long Terminal Repeats in Wild Mice: Implication for Evolution of MLVs (1999) (49)
Structure and Distribution of Endogenous Nonecotropic Murine Leukemia Viruses in Wild Mice (1998) (49)
Hybridization of Rous Sarcoma Virus Deoxyribonucleic Acid Polymerase Product and Ribonucleic Acids from Chicken and Rat Cells Infected with Rous Sarcoma Virus (1972) (49)
Genomes of endogenous and exogenous avian retroviruses. (1983) (48)
Ribonuclease-Sensitive Deoxyribonucleic Acid Polymerase Activity in Uninfected Rat Cells and Rat Cells Infected with Rous Sarcoma Virus (1971) (47)
Genetic Variation in Retroviruses (1990) (47)
Superantigens and endogenous retroviruses: a confluence of puzzles. (1992) (47)
Pushing the envelope (2017) (47)
Genetics of Endogenous Murine Leukemia Viruses a (1989) (46)
Molecular analysis of viable spontaneous and radiation-induced albino (c)-locus mutations in the mouse. (1993) (45)
Multiple Sources of Contamination in Samples from Patients Reported to Have XMRV Infection (2012) (45)
Characterization of Rous sarcoma virus sequences essential for viral gene expression (1987) (43)
Ultrasensitive single-genome sequencing: accurate, targeted, next generation sequencing of HIV-1 RNA (2016) (43)
Search for the Mechanism of Genetic Variation in the pro Gene of Human Immunodeficiency Virus (1999) (42)
Immunogenicity of AGS-004 Dendritic Cell Therapy in Patients Treated During Acute HIV Infection. (2017) (41)
Patterns of Human Immunodeficiency Virus Type 1 Recombination Ex Vivo Provide Evidence for Coadaptation of Distant Sites, Resulting in Purifying Selection for Intersubtype Recombinants during Replication (2010) (41)
Selection of an avian retrovirus mutant with extended receptor usage (1997) (40)
Role of recombinant ecotropic and polytropic viruses in the development of spontaneous thymic lymphomas in HRS/J mice (1984) (40)
Genetic Diversity of Simian Immunodeficiency Virus Encoding HIV-1 Reverse Transcriptase Persists in Macaques despite Antiretroviral Therapy (2010) (40)
Human immunodeficiency viruses [letter] (1986) (39)
Mapping host range-specific oligonucleotides within genomes of the ecotropic and mink cell focus-inducing strains of Moloney murine leukemia virus (1978) (39)
Evaluation of the pathogenesis of decreasing CD4(+) T cell counts in human immunodeficiency virus type 1-infected patients receiving successfully suppressive antiretroviral therapy. (2009) (39)
Multi-site adaptation in the presence of infrequent recombination. (2010) (38)
HIV Infected T Cells Can Proliferate in vivo Without Inducing Expression of the Integrated Provirus (2019) (38)
Truncated gag-related proteins are produced by large deletion mutants of Rous sarcoma virus and form virus particles (1985) (38)
Mutant and recombinant avian retroviruses with extended host range. (1980) (37)
Recombinant origin, contamination, and de-discovery of XMRV. (2012) (37)
Reproductive biology: A provirus put to work (2000) (37)
Characterization of the endogenous nonecotropic murine leukemia viruses of NZB/BINJ and SM/J inbred strains (2004) (37)
Physical map of the Kirsten sarcoma virus genome as determined by fingerprinting RNase T1-resistant oligonucleotides (1978) (37)
Mechanisms of Avian Retroviral Host Range Extension (2003) (37)
Betaretroviral Envelope Subunits Are Noncovalently Associated and Restricted to the Mammalian Class (2012) (36)
Polyadenylation at correct sites in genome RNA is not required for retrovirus replication or genome encapsidation (1989) (36)
The discovery of HTLV-1, the first pathogenic human retrovirus (2015) (36)
Weapons of Mutational Destruction (2003) (35)
Detection of nonnucleoside reverse-transcriptase inhibitor-resistant HIV-1 after discontinuation of virologically suppressive antiretroviral therapy. (2008) (34)
The Blood Xenotropic Murine Leukemia Virus–Related Virus Scientific Research Working Group: mission, progress, and plans (2011) (33)
Molecular mechanisms of nucleic acid integration (1990) (33)
Low-frequency nevirapine (NVP)-resistant HIV-1 variants are not associated with failure of antiretroviral therapy in women without prior exposure to single-dose NVP. (2014) (33)
Retroviral Virions and Genomes -- Retroviruses (1997) (33)
Role of the C region in relative growth rates of endogenous and exogenous avian oncoviruses. (1980) (33)
The Discovery of Reverse Transcriptase. (2016) (32)
Retrovirus Integration Database (RID): a public database for retroviral insertion sites into host genomes (2016) (31)
New seizure frequency QTL and the complex genetics of epilepsy in EL mice (1995) (31)
The distribution of insertionally polymorphic endogenous retroviruses in breast cancer patients and cancer-free controls (2014) (31)
Retroviral Pathogenesis -- Retroviruses (1997) (31)
A Novel Recombinant Retrovirus in the Genomes of Modern Birds Combines Features of Avian and Mammalian Retroviruses (2013) (30)
Evolution of retroviruses: fossils in our DNA. (2004) (30)
A new approach to the isolation of RNA-DNA hybrids and its application to the quantitative determination of labeled tumor virus RNA. (1974) (30)
Virions at the Gates: Receptors and the Host–Virus Arms Race (2013) (29)
Characterization, mapping and distribution of the two XMRV parental proviruses (2011) (28)
Point Mutations in the Avian Sarcoma/Leukosis Virus 3′ Untranslated Region Result in a Packaging Defect (1999) (27)
Substrate Sequence Selection by Retroviral Integrase (2001) (27)
Recombinant avian oncoviruses. I. Alterations in the precursor to the internal structural proteins. (1978) (27)
Promoter expression of HERV-K (HML-2) provirus-derived sequences is related to LTR sequence variation and polymorphic transcription factor binding sites (2018) (26)
SELECTIVE INHIBITION OF THE SECONDARY IMMUNE RESPONSE TO MOUSE SKIN ALLOGRAFTS BY CELL-FREE EHRLICH ASCITES CARCINOMA FLUID (1968) (26)
Sequences in the gag-pol-5'env region of avian leukosis viruses confer the ability to induce osteopetrosis. (1985) (25)
Clonal expansion of SIV-infected cells in macaques on antiretroviral therapy is similar to that of HIV-infected cells in humans (2019) (25)
Studies on the Restriction of Murine Leukemia Viruses by Mouse APOBEC3 (2012) (25)
Mechanisms of HERV-K (HML-2) Transcription during Human Mammary Epithelial Cell Transformation (2017) (25)
Dynamic Shifts in the HIV Proviral Landscape During Long Term Combination Antiretroviral Therapy: Implications for Persistence and Control of HIV Infections (2020) (24)
Oncogenicity of DNA in vivo: tumor induction with expression plasmids for activated H-ras and c-myc. (2008) (24)
A novel endogenous retrovirus-related element in the human genome resembles a DNA transposon: evidence for an evolutionary link? (2002) (24)
Highly fit ancestors of a partly sexual haploid population. (2007) (23)
Evolutionary variants of Rous sarcoma virus: large deletion mutants do not result from homologous recombination (1985) (23)
Retrovirus restriction revealed (1996) (23)
Ultrasensitive Allele-Specific PCR Reveals Rare Preexisting Drug-Resistant Variants and a Large Replicating Virus Population in Macaques Infected with a Simian Immunodeficiency Virus Containing Human Immunodeficiency Virus Reverse Transcriptase (2012) (23)
Rescue of Rous Sarcoma Virus from Rous Sarcoma Virus-Transformed Mammalian Cells (1972) (23)
Characterization of endogenous and recombinant proviral elements of a highly tumorigenic AKR cell line (1991) (23)
Genetic relationships of three Yukon caribou herds determined by DNA typing (2000) (23)
Rous sarcoma virus contains sequences which permit expression of the gag gene in Escherichia coli (1983) (21)
Well-mixed plasma and tissue viral populations in RT-SHIV-infected macaques implies a lack of viral replication in the tissues during antiretroviral therapy (2015) (21)
Restricted Replication of Xenotropic Murine Leukemia Virus-Related Virus in Pigtailed Macaques (2012) (20)
Determination of 3' end processing in retroelements. (1990) (20)
Low concentrations and low spatial variability of marine microplastics in oysters (Crassostrea virginica) in a rural Georgia estuary. (2019) (20)
RT-SHIV subpopulation dynamics in infected macaques during anti-HIV therapy (2009) (20)
Endogenous retroviruses and human cancer: is there anything to the rumors? (2014) (20)
Chlamydia trachomatis RNA polymerase alpha subunit: sequence and structural analysis (1995) (19)
Genes responsible for transformation by avian RNA tumor viruses. (1976) (19)
Increasing sequence correlation limits the efficiency of recombination in a multisite evolution model. (2007) (19)
An analytical pipeline for identifying and mapping the integration sites of HIV and other retroviruses (2020) (19)
The Interactions of Retroviruses and their Hosts -- Retroviruses (1997) (19)
Integration in oncogenes plays only a minor role in determining the in vivo distribution of HIV integration sites before or during suppressive antiretroviral therapy (2021) (18)
Viral Entry and Receptors -- Retroviruses (1997) (18)
Structure of products of the Moloney murine leukemia virus endogenous DNA polymerase reaction (1979) (18)
Rous sarcoma virus is integrated but not expressed in chicken early embryonic cells. (1987) (18)
Optimization of allele-specific PCR using patient-specific HIV consensus sequences for primer design. (2010) (17)
Stimulation of mouse mammary tumor virus superantigen expression by an intragenic enhancer. (1995) (17)
Mouse Mammary Tumor Virus Superantigen Expression in B Cells Is Regulated by a Central Enhancer within the pol Gene (1998) (16)
Influence of sequences in the long terminal repeat and flanking cell DNA on polyadenylation of retroviral transcripts (1993) (16)
Recombination between the defective component of an acute leukemia virus and Rous associated virus O, an endogenous virus of chickens. (1979) (16)
Sequences outside of the long terminal repeat determine the lymphomogenic potential of Rous-associated virus type 1 (1985) (16)
Virology. Weapons of mutational destruction. (2003) (15)
Gorillas have been infected with the HERV-K (HML-2) endogenous retrovirus much more recently than humans and chimpanzees (2019) (15)
RNA editing, epitranscriptomics, and processing in cancer progression (2015) (15)
Mercury and polychlorinated biphenyls in striped bass (Morons saxatilis) from two nova Scotia Rivers (1984) (15)
Host-retrovirus arms race: trimming the budget. (2008) (15)
Fifteen Years Later: Hard and Soft Selection Sweeps Confirm a Large Population Number for HIV In Vivo (2014) (15)
Workshop Summary: Workshop on Perinatally Acquired Human Immunodeficiency Virus Infection in Long-Term Surviving Children: A Collaborative Study of Factors Contributing to Slow Disease Progression (1996) (15)
Thymic epithelial genotype influences the production of recombinant leukemogenic retroviruses in mice (1983) (15)
Retroviruses: Closing the joint (1999) (14)
HIV proviral DNA integration can drive T cell growth ex vivo (2020) (14)
False-positive HIV PCR test following ex vivo lentiviral gene transfer treatment of X-linked severe combined immunodeficiency vector. (2014) (14)
Rate of virus-specific RNA synthesis in synchronized chicken embryo fibroblasts infected with avian leukosis virus (1976) (14)
HIV Proviral Sequence Database (PSD): A New Public Database for Near Full-Length HIV Proviral Sequences and Their Meta-Analyses. (2020) (14)
Nucleotide sequence of Rous sarcoma virus RNA at the initiation site of DNA synthesis: The 102nd nucleotide is U. (1977) (14)
Too high a price (1989) (13)
Evolution of Broad Host Range in Retroviruses Leads to Cell Death Mediated by Highly Cytopathic Variants (2006) (13)
Lines drawn in epitope wars (1995) (13)
PAPNC, a novel method to calculate nucleotide diversity from large scale next generation sequencing data. (2014) (13)
Genetics of intracisternal-A-particle-related envelope-encoding proviral elements in mice (1996) (12)
Attenuation by a thousand cuts. (2008) (12)
Endogenous nonecotropic proviruses mapped with oligonucleotide probes from the long terminal repeat region (1994) (12)
Linked dual-class HIV resistance mutations are associated with treatment failure. (2019) (11)
Binding of more than one Tva800 molecule is required for ASLV-A entry (2011) (11)
The Place of Retroviruses in Biology (1997) (10)
Characterization of Hortulanus Endogenous Murine Leukemia Virus, an Endogenous Provirus That Encodes an Infectious Murine Leukemia Virus of a Novel Subgroup (2005) (10)
Short-Course Combivir after Single-Dose Nevirapine Reduces but Does Not Eliminate the Emergence of Nevirapine Resistance in Women (2012) (10)
Amplifying and quantifying HIV-1 RNA in HIV infected individuals with viral loads below the limit of detection by standard clinical assays. (2011) (10)
Principles of Retroviral Vector Design (1997) (10)
Nucleic Acid, Antibody, and Virus Culture Methods to Detect Xenotropic MLV-Related Virus in Human Blood Samples (2011) (10)
10 Endogenous Viruses (1982) (10)
Interplay Between Experiment and Theory in Development of a Working Model for HIV-1 Population Dynamics (1999) (10)
Endogenous Murine Leukemia Viruses: Relationship to XMRV and Related Sequences Detected in Human DNA Samples (2011) (9)
Interactions of Murine APOBEC 3 and Human APOBEC 3 G with Murine Leukemia Viruses (2008) (9)
Historical Introduction to the General Properties of Retroviruses -- Retroviruses (1997) (9)
Generation of Multiple Replication-Competent Retroviruses through Recombination between PreXMRV-1 and PreXMRV-2 (2013) (9)
ICTV Virus Taxonomy Profile: Retroviridae 2021 (2021) (9)
Widespread expression of the ancient HERV-K (HML-2) provirus group in normal human tissues (2022) (9)
Low Frequency NNRTI-Resistant Variants Contribute to Failure of Efavirenz-Containing Regimens in Treatment-Experienced Patients (2010) (8)
How does variation count? (1992) (8)
Clonal Expansion of Infected CD4+ T Cells in People Living with HIV (2021) (8)
The Mouse Mammary Tumor Virus Transcription Enhancers for Hematopoietic Progenitor and Mammary Gland Cells Share Functional Elements (2000) (8)
Purification, Composition, and Morphology of Virions (1997) (8)
Tumors Induced in Mice by Direct Inoculation of Plasmid DNA Expressing Both Activated H-ras and c-myc (2010) (7)
Proceedings of the Frontiers of Retrovirology Conference 2016 (2016) (7)
Mus spicilegus Endogenous Retrovirus HEMV Uses Murine Sodium-Dependent Myo-Inositol Transporter 1 as a Receptor (2012) (6)
Retrovirus Variation and Evolution (1995) (6)
Response: Plasma Viral Load, CD4+ Cell Counts, and HIV-1 Production by Cells (1996) (6)
Development and Applications of Retroviral Vectors -- Retroviruses (1997) (6)
Interpreting the effect of vaccination on steady state infection in animals challenged with Simian immunodeficiency virus. (2010) (5)
Genetic variation in avian retroviruses. (1990) (5)
Lower pre-ART intra-participant HIV-1 pol diversity may not be associated with virologic failure in adults (2018) (5)
Course of Infection with HIV and SIV (1997) (5)
HIV pathogenesis. Lines drawn in epitope wars. (1995) (5)
20 Reverse Transcription and Evolution (1993) (5)
The virology of AIDS: 1990 (1990) (5)
Proposed alternatives for the use of anti-HIV drugs: is it appropriate? (1999) (4)
Synthesis and Organization of Env Glycoproteins (1997) (4)
CpG Methylation Profiles of HIV-1 Proviral DNA in Individuals on ART (2021) (4)
Pathogenesis of HIV and SIV -- Retroviruses (1997) (4)
Virology under the Microscope—a Call for Rational Discourse (2023) (4)
Retroviral DNA integration. (1992) (4)
Prevalence of XMRV Nucleic Acid and Antibody in HIV-1-Infected Men and in Men at Risk for HIV-1 Infection (2011) (4)
Processing of Retroviral RNA (1997) (4)
Early Emergence and Long-Term Persistence of HIV-Infected T Cell Clones in Children (2020) (4)
Early Emergence and Long-Term Persistence of HIV-Infected T-Cell Clones in Children (2021) (4)
In vitro studies of the replication of Moloney murine leukemia virus. (1979) (3)
Tracking HIV-1-Infected Cell Clones Using Integration Site-Specific qPCR (2021) (3)
A Mouse Strain Defective in Both T Cells and NK Cells Has Enhanced Sensitivity to Tumor Induction by Plasmid DNA Expressing Both Activated H-Ras and c-Myc (2014) (3)
A Brief Chronicle of Retrovirology (1997) (3)
50th anniversary of the discovery of reverse transcriptase (2021) (3)
Overview of Reverse Transcription (1997) (3)
Mouse mammary tumor virus superantigen expression is reduced by glucocorticoid treatment. (2000) (3)
Correction to: An analytical pipeline for identifying and mapping the integration sites of HIV and other retroviruses (2020) (2)
Retroviral “Lifestyles”: Simple versus Complex (1997) (2)
SYNTHESIS AND PROCESSING OF THE INTERNAL STRUCTURAL PROTEINS OF RETROVIRUSES: SITE OF SYNTHESIS, EVIDENCE FOR MULTIPLY-CHARGED SPECIES, AND ANALYSIS OF A MUTANT DEFECTIVE IN PROCESSING (1980) (2)
Taxonomy and Sequence Relatedness of Retroviruses (1997) (2)
The scoop on HIV mutations. (1996) (2)
Synthesis of Gag and Gag-Pro-Pol Proteins (1997) (2)
Cancer induction by insertional mutagenesis: the role of viral genes in avian leukosis virus induced cancers. (1983) (2)
HIVIntact: a python-based tool for HIV-1 genome intactness inference (2021) (2)
Evolution of Retroelements and their Hosts (1997) (1)
High-throughput sequencing of integrated HIV-1 reveals novel proviral structures (2019) (1)
HIV dynamics, genetic variation, and drug resistance (1998) (1)
Reverse Transcription of the Viral Genome in vivo (1997) (1)
Molecular BasisofHostRangeVariation inAvianRetroviruses (1985) (1)
Genetics of leukemogenesis by avian leukosis viruses. (1981) (1)
4 Structure of the Retroviral Genome (1982) (1)
HIV-DRLink: A Tool for Reporting Linked HIV-1 Drug Resistance Mutations in Large Single-Genome Datasets Using the Stanford HIV Database. (2020) (1)
Membrane Fusion and Viral Entry (1997) (1)
The distribution of insertionally polymorphic endogenous retroviruses in breast cancer patients and cancer-free controls (2014) (1)
Workshop on perinatally acquired human immunodeficiency virus infection in long-term surviving children: a collaborative study of factors contributing to slow disease progression. The Long-Term Survivor Project. (1996) (1)
Deep Sequencing Analysis of Individual HIV-1 Proviruses Reveals Frequent Asymmetric Long Terminal Repeats (2022) (1)
Overview of Retroviral Assembly (1997) (1)
2020 SARS-CoV-2 diversification in the United States: Establishing a pre-vaccination baseline (2021) (1)
Homage to Howard Temin (1997) (1)
Principles of Particle Assembly (1997) (1)
Short Communication: HIV-DRLink: A Tool for Reporting Linked HIV-1 Drug Resistance Mutations in Large Single-Genome Data Sets Using the Stanford HIV Database (2020) (1)
Why Is It So Hard to Make an HIV Vaccine (2016) (1)
Cellular Targets of Infection (1997) (1)
Special Biological Features of Reverse Transcription (1997) (1)
Virology under the Microscope—a Call for Rational Discourse (2023) (1)
Chapter 6 – Structural Analysis of Retrovirus Genomes (1980) (1)
Outline of the Integration Process (1997) (1)
Book Review Virus Hunting: AIDS, cancer, and the human retrovirus By Robert Gallo. 352 pp., illustrated. New York, Basic Books, 1991. $22.95. (1991) (1)
Biochemistry of Reverse Transcription (1997) (1)
Genetic relationships of three Yukon caribou [Rangifer tarandus caribou] herds determined by DNA typing (2000) (1)
A Pre-Vaccination Baseline of SARS-CoV-2 Genetic Surveillance and Diversity in the United States (2022) (1)
: A new viral order unifying five families of reverse-transcribing viruses. (2018) (1)
OP 1.3 – 00017 The fraction of cells with unspliced HIV RNA is not associated with plasma viremia (2022) (1)
Immune Responses to HIV and SIV (1997) (1)
Retroviral Env Gene Products: Receptor Binding and Host-Range Determinants (1997) (1)
Growth and Assay of Pathogenic Retroviruses (1997) (1)
Virology under the Microscope—a Call for Rational Discourse (2023) (1)
Structural Classes of Retroelements and Replication Strategies (1997) (1)
Virology. How does variation count? (1992) (1)
Retrovirus Integration Database (RID): a public database for retroviral insertion sites into host genomes (2016) (0)
Proviral landscape in children parallels adults and enables reservoir reconstruction (2019) (0)
The Retroviridae (1992) (0)
Replication of Retrovirus Genomes (2018) (0)
Mapping of the genome of Prague Rous sarcoma virus B. (1976) (0)
Replication, Differentiation, and the Cell Cycle (1997) (0)
From XMRV to HIV-1 and back (2011) (0)
Avian Type C Retroviruses (Retroviridae) (1999) (0)
Models for Virion Structure (1997) (0)
Transmission and Epidemiology (1997) (0)
Tissue-Specific Disease and Organ System Failure (1997) (0)
Creation of new order, Ortervirales, for 5 families of reverse-transcribing viruses (2017) (0)
Immunological Approaches to Controlling Retroviral Infection (1997) (0)
Effects of Proviral Integration on Host Gene Expression (1997) (0)
Retroviruses as Agents of Genetic Change (1997) (0)
The HERV-K(HML-2) Transcriptome in Non-Diseased Tissue (2022) (0)
Immune Response to Retroviral Infection (1997) (0)
Promoter expression of HERV-K (HML-2) provirus-derived sequences is related to LTR sequence variation and polymorphic transcription factor binding sites (2018) (0)
Typesof Genes for Transformation (2006) (0)
Retroviruses and their Interactions with Multicellular Hosts (1997) (0)
Diverse proviral structure of HIV integrants in clonally expanded cells (2015) (0)
Symposium: 30 years of AIDS‐ memories, achievements and future perspectives (2011) (0)
A12 Modeling residual HIV replication and the emergence of drug resistance on ART (2019) (0)
Correction to: An analytical pipeline for identifying and mapping the integration sites of HIV and other retroviruses (2020) (0)
The Best of Retrotrivia (1997) (0)
Ultradeep analysis of pretherapy HIV predicts large and genetically complex reservoirs during antiretroviral therapy (2019) (0)
A PHILIPPINE FEVER. (1905) (0)
Well-mixed plasma and tissue viral populations in RT-SHIV-infected macaques implies a lack of viral replication in the tissues during antiretroviral therapy (2015) (0)
Genetic relationships between Woodland and Barren ground caribou (1996) (0)
Genetics of Leukemogenesis by A vian Leukosis Viruses (2005) (0)
Accessory Proteins and Assembly (1997) (0)
P212 Comparison of different molecular typing methods for Salmonella enterica serovar Enteritidis (2009) (0)
Viral RNA Packaging (1997) (0)
Significance of retrovirus contaminants of cell substrates (2006) (0)
Book Review Microbe Hunters — Then and now Edited by Hilary Koprowski and Michael B.A. Oldstone. 456 pp., illustrated. Bloomington, Ill., Medi-Ed Press, 1996. $45. 0-936741-11-2 (1997) (0)
Letter from John M. Coffin, Tufts University School of Medicine to Harold Varmus (1985) (0)
Biochemical Activities and Assays (1997) (0)
Efficient Autointegration ofAvianRetrovirus DNA InVitro (1990) (0)
Host Genes that Influence Pathogenesis (1997) (0)
Receptor-Mediated Barriers to Retroviral Infection (1997) (0)
HIV viremia is the product of a small fraction of infected cells (2017) (0)
Pathogenesis of Kaposi's Sarcoma and Other Opportunistic Neoplasms (1997) (0)
Summary and Perspectives (1997) (0)
Molecular biology of cancer: genes and proteins in oncogenesis. (1984) (0)
Characterization ofRousSarcoma VirusSequences Essential for Viral GeneExpression (1987) (0)
Letter from John M. Coffin and Harold Varmus to their colleagues (1981) (0)
1 Title : Improved Single Copy Assays for Quantification of Persistent HIV-1 Viremia in 1 Patients on Suppressive Antiretroviral Therapy 2 3 (2014) (0)
Recombinant Origin and Interspecies Transmission of a HERV-K(HML-2)-related Primate Retrovirus With a Novel RNA Transport Element (2022) (0)
Incorporation of Env into the Viral Particle (1997) (0)
Chlamydia trachomatisRNA Polymerase aSubunit: Sequence and Structural Analysis (1995) (0)
Figure 16, [Retroviral 3′-end processing and polyadenylation...]. (1997) (0)
Organization of Genes in Prototypic Retroviruses (1997) (0)
What a manual should include: Advanced molecular genetics (1985) (0)
Analysis of 454 sequencing error rate, error sources, and artifact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA (2013) (0)
Role of Lymphoid Organs in Immunopathogenesis (1997) (0)
Correction: The Effect of Raltegravir Intensification on Low-level Residual Viremia in HIV-Infected Patients on Antiretroviral Therapy: A Randomized Controlled Trial (2011) (0)
Figure 13, [Ribbon diagram of the dimeric...]. (1997) (0)
The Integration Reaction (1997) (0)
Retroviruses and AIDS: evolution and drug resistance (2007) (0)
Genetic Analysis ofEndogenous Xenotropic MurineLeukemia Viruses: Association withTwo CommonMouseMutations andthe Viral Restriction LocusFv-1 (1989) (0)
Sequences Outside oftheLongTerminal RepeatDetermine the Lymphomogenic Potential ofRous-Associated VirusType1 (1985) (0)
Mutational Consequences of Retroelements in the Germ Line (1997) (0)
The Development of Retrovirology as Intellectual History (1997) (0)
HIV-1 in Lymph Nodes is Maintained by Cellular Proliferation During Antiretroviral 1 Therapy 2 3 (2019) (0)
Multi-laboratory evaluations of XMRV nucleic acid detection assays (2011) (0)
An analytical pipeline for identifying and mapping the integration sites of HIV and other retroviruses (2020) (0)
Quantitative Determination andLocation of NewlySynthesized Virus-Specific Ribonucleic AcidinChicken Cells Infected withRous Sarcoma Virus (1973) (0)
HIVIntact: a python-based tool for HIV-1 genome intactness inference (2021) (0)
VIRAL ENVELOPE GENES AND c REGIONS IN NON-ACUTE AVIAN LEUKOSIS VIRUS ASSOCIATED DISEASE (1980) (0)
Characterization ofEndogenous andRecombinant Proviral Elements ofa Highly Tumorigenic AKR CellLine (1991) (0)
Abstracts of papers presented at the 1997 Meeting on Retroviruses, May 20-May 25, 1997 (1997) (0)
Recent Progress in HIV Drug Resistance Research-From Bench to Bedside- (2005) (0)
Retroviruses and their Interactions with the Host Cell (1997) (0)
Microbiology: the microbe 1984. (1985) (0)
Figure 5, [Strategies for packaging cell line...]. (1997) (0)
Figure 3, [Three distinct pathways for retroviral...]. (1997) (0)
Integration in or Near Oncogenes Plays Only a Minor Role in Determining the in Vivo Distribution of HIV Integration Sites Before or During Suppressive Antiretroviral Therapy (2020) (0)
HIV proviruses with identical sequences arise from cell expansion and infection by a common ancestor virus (2019) (0)
On the Nomenclature of Viruses Associated with AIDS (1985) (0)
Comparison to Other Gene Transfer Systems (1997) (0)
Updates on two public databases for studies of HIV persistence; the Retrovirus Integration Database (RID) and HIV Proviral Sequence Database (PSD) (2019) (0)
Skin oils and chemicals in HIV and AIDS “ (0)
Table 3, Other HIV-1 Vaccine Approaches (1997) (0)
Ultrasensitive single-genome sequencing: accurate, targeted, next generation sequencing of HIV-1 RNA (2016) (0)
Maturation of Viral Particles (1997) (0)
Long-term persistence of HIV-infected cell clones in early treated children (2019) (0)
Patterns of Human Immunodeﬁciency Virus Type 1 Recombination Ex Vivo Provide Evidence for Coadaptation of Distant Sites, Resulting in Purifying Selection for Intersubtype Recombinants during Replication (cid:1) † (2010) (0)
Figure 11, [Linear representation of the ASLV...]. (1997) (0)
Localization, characterization and possible effect of murine leukemia viral integration within the rd gene☆ (1992) (0)
Other Retrovirus-Induced Diseases (1997) (0)
The Retroviral Protease (1997) (0)
Effect of Infection on Cell Division and Differentiation (1997) (0)
HIV Population Dynamics (2013) (0)
Retrovirus-Induced Immunodeficiencies (1997) (0)
Nomenclature for endogenous retrovirus (ERV) loci (2018) (0)
the Mammalian Class to Noncovalently Associated and Restricted Betaretroviral Envelope Subunits Are (2014) (0)
HIV-DRLink: A tool for detecting linked HIV-1 drug resistance mutations in next generation sequencing data (2019) (0)
A9 A method to obtain full-length HIV proviral sequences and their sites of integration (2019) (0)
1 HIV Populations are Large and Accumulate High Genetic Diversity in Nonlinear (2013) (0)
Immunopathogenic Mechanisms of HIV Infection (1997) (0)

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