Philip Bourne

Q: What Schools Are Affiliated With Philip Bourne

Philip Bourne is affiliated with the following schools: University of Sheffield, University of California, San Diego, University of Virginia, Columbia University, University of California, San Francisco

Philip Bourne's AcademicInfluence.com Rankings

Philip Bourne

Biology

#873

World Rank

#1526

Historical Rank

Computational Biology

#16

World Rank

#16

Historical Rank

biology Degrees

Philip Bourne

Chemistry

#1846

World Rank

#2655

Historical Rank

Physical Chemistry

#207

World Rank

#244

Historical Rank

chemistry Degrees

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Biology
Chemistry

Philip Bourne's Degrees

PhD Physical Chemistry University of California, San Francisco
Bachelors Chemistry University of California, San Diego

Why Is Philip Bourne Influential?

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According to Wikipedia, Philip Eric Bourne is an Australian bioinformatician, non-fiction writer, and businessman. He is currently Stephenson Chair of Data Science and Director of the School of Data Science and Professor of Biomedical Engineering and was the first associate director for Data Science at the National Institutes of Health, where his projects include managing the Big Data to Knowledge initiative, and formerly Associate Vice Chancellor at UCSD. He has contributed to textbooks and is a strong supporter of open-access literature and software. His diverse interests have spanned structural biology, medical informatics, information technology, structural bioinformatics, scholarly communication and pharmaceutical sciences. His papers are highly cited, and he has an h-index above 50.

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Philip Bourne's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

The Protein Data Bank (2000) (33289)
The FAIR Guiding Principles for scientific data management and stewardship (2016) (5928)
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. (1998) (2103)
ElliPro: a new structure-based tool for the prediction of antibody epitopes (2008) (973)
The Protein Data Bank. (2002) (945)
The RCSB Protein Data Bank: redesigned web site and web services (2010) (599)
SuperTarget and Matador: resources for exploring drug-target relationships (2007) (537)
The Protein Data Bank and the challenge of structural genomics (2000) (527)
The RCSB Protein Data Bank: new resources for research and education (2012) (470)
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education (2014) (457)
How open science helps researchers succeed (2016) (439)
Immune epitope database analysis resource (2012) (429)
The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema (2004) (339)
Immune epitope database analysis resource (IEDB-AR) (2008) (317)
The RCSB PDB information portal for structural genomics (2005) (317)
The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications (2005) (314)
Drug Discovery Using Chemical Systems Biology: Repositioning the Safe Medicine Comtan to Treat Multi-Drug and Extensively Drug Resistant Tuberculosis (2009) (310)
The Protein Data Bank: unifying the archive (2002) (297)
Structural Evolution of the Protein Kinase–Like Superfamily (2005) (271)
History of biological metal utilization inferred through phylogenomic analysis of protein structures (2010) (264)
Drug Discovery Using Chemical Systems Biology: Identification of the Protein-Ligand Binding Network To Explain the Side Effects of CETP Inhibitors (2009) (248)
The Immune Epitope Database and Analysis Resource: From Vision to Blueprint (2005) (246)
Detecting evolutionary relationships across existing fold space, using sequence order-independent profile–profile alignments (2008) (246)
Biodiversity data should be published, cited, and peer reviewed. (2013) (226)
Phylogeny determined by protein domain content. (2005) (225)
Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry (2006) (215)
Antibody-protein interactions: benchmark datasets and prediction tools evaluation (2007) (213)
PROMISCUOUS: a database for network-based drug-repositioning (2010) (207)
Drug Off-Target Effects Predicted Using Structural Analysis in the Context of a Metabolic Network Model (2010) (196)
Pre-calculated protein structure alignments at the RCSB PDB website (2010) (193)
Novel computational approaches to polypharmacology as a means to define responses to individual drugs. (2012) (193)
Natural language processing of symptoms documented in free-text narratives of electronic health records: a systematic review (2019) (183)
BioJava: an open-source framework for bioinformatics in 2012 (2012) (183)
Drug Discovery Using Chemical Systems Biology: Weak Inhibition of Multiple Kinases May Contribute to the Anti-Cancer Effect of Nelfinavir (2011) (170)
SuperTarget goes quantitative: update on drug–target interactions (2011) (168)
A Machine Learning-Based Method To Improve Docking Scoring Functions and Its Application to Drug Repurposing (2011) (166)
A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand binding sites (2007) (143)
Structure-based systems biology for analyzing off-target binding. (2011) (138)
The Protein Data Bank, 1999– (2006) (137)
The distribution and query systems of the RCSB Protein Data Bank (2004) (134)
Progress with covalent small-molecule kinase inhibitors. (2018) (131)
CE-MC: a multiple protein structure alignment server (2004) (119)
Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome (2013) (118)
Preprints for the life sciences (2016) (117)
An alternative view of protein fold space (2000) (116)
A systematic review of natural language processing and text mining of symptoms from electronic patient-authored text data (2019) (116)
Big Data Science: Opportunities and Challenges to Address Minority Health and Health Disparities in the 21st Century. (2017) (116)
Screening of environmental contaminants for ecdysteroid agonist and antagonist activity using the Drosophila melanogaster BII cell in vitro assay (2001) (113)
The PDB data uniformity project (2001) (112)
The design and implementation of the immune epitope database and analysis resource (2005) (111)
A database and tools for 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm (2001) (109)
[30] Macromolecular crystallographic information file (1997) (109)
An algorithm based on graph theory for the assembly of contigs in physical mapping of DNA (1994) (108)
Exploiting sequence and structure homologs to identify protein–protein binding sites (2005) (105)
The Mycobacterium tuberculosis Drugome and Its Polypharmacological Implications (2010) (104)
Partitioning protein structures into domains: why is it so difficult? (2006) (103)
Will a Biological Database Be Different from a Biological Journal? (2005) (103)
The Protein Data Bank (PDB) | NIST (2002) (102)
The protein kinase resource. (1997) (102)
Evidence for treatment with estradiol for women with SARS-CoV-2 infection (2020) (97)
A unified statistical model to support local sequence order independent similarity searching for ligand-binding sites and its application to genome-based drug discovery (2009) (97)
Ten Simple Rules for Better Figures (2014) (94)
The Evolutionary History of Protein Domains Viewed by Species Phylogeny (2009) (92)
Ten Simple Rules for a Successful Collaboration (2007) (91)
Determining Cysteines Available for Covalent Inhibition Across the Human Kinome. (2017) (89)
In Silico Elucidation of the Molecular Mechanism Defining the Adverse Effect of Selective Estrogen Receptor Modulators (2007) (88)
Perspective: Sustaining the big-data ecosystem (2015) (87)
Raloxifene attenuates Pseudomonas aeruginosa pyocyanin production and virulence. (2012) (81)
Ten simple rules to consider regarding preprint submission (2017) (79)
A Multidimensional Strategy to Detect Polypharmacological Targets in the Absence of Structural and Sequence Homology (2010) (78)
Toward consistent assignment of structural domains in proteins. (2004) (78)
Addendum: The FAIR Guiding Principles for scientific data management and stewardship (2019) (75)
The Macromolecular Crystallographic Information File (mmCIF) (2001) (73)
STAR/mmCIF: An ontology for macromolecular structure (2000) (71)
The NIH Big Data to Knowledge (BD2K) initiative (2015) (71)
Ten Simple Rules for a Good Poster Presentation (2007) (69)
Structural Bioinformatics: Bourne/Structural Bioinformatics (2005) (68)
Common EF‐hand motifs in cholinesterases and neuroligins suggest a role for Ca2+ binding in cell surface associations (2008) (66)
Ten Simple Rules for Getting Published (2005) (66)
Functional Coverage of the Human Genome by Existing Structures, Structural Genomics Targets, and Homology Models (2005) (65)
SMAP-WS: a parallel web service for structural proteome-wide ligand-binding site comparison (2010) (63)
Cloud computing applications for biomedical science: A perspective (2018) (61)
Ten Simple Rules for Making Good Oral Presentations (2007) (61)
IL-13 is a driver of COVID-19 severity (2020) (60)
A New Algorithm for the Alignment of Multiple Protein Structures Using Monte Carlo Optimization (2000) (60)
Outcome of a workshop on archiving structural models of biological macromolecules. (2006) (59)
Towards Structural Systems Pharmacology to Study Complex Diseases and Personalized Medicine (2014) (58)
Assessment of natural products in the Drosophila melanogaster BII cell bioassay for ecdysteroid agonist and antagonist activities (2001) (57)
IEDB-3D: structural data within the immune epitope database (2010) (56)
The Immune Epitope Database and Analysis Resource (2006) (51)
Uptake and leaching of nitrogen from artificial urine applied to grassland on different dates during the growing season (1993) (50)
EpitopeViewer: a Java application for the visualization and analysis of immune epitopes in the Immune Epitope Database and Analysis Resource (IEDB) (2007) (50)
Erabutoxin b. Initial protein refinement and sequence analysis at 0.140-nm resolution. (1985) (48)
Systems biology of the structural proteome (2016) (48)
Intrinsic Evaluation of Text Mining Tools May Not Predict Performance on Realistic Tasks (2007) (47)
Limitations of Ab Initio Predictions of Peptide Binding to MHC Class II Molecules (2010) (46)
Harnessing Big Data for Systems Pharmacology (2016) (46)
Toward effective software solutions for big biology (2015) (46)
Ten Simple Rules for Getting Grants (2006) (46)
Helix packing and subunit conformation in horse spleen apoferritin (1980) (46)
Structure comparison and alignment. (2005) (45)
Sm/Lsm Genes Provide a Glimpse into the Early Evolution of the Spliceosome (2009) (45)
Ten Simple Rules for Building and Maintaining a Scientific Reputation (2011) (43)
Drug repurposing to target Ebola virus replication and virulence using structural systems pharmacology (2016) (43)
An ontology for immune epitopes: application to the design of a broad scope database of immune reactivities (2005) (42)
Ten Simple Rules for Reviewers (2006) (42)
Conserved key amino acid positions (CKAAPs) derived from the analysis of common substructures in proteins (2001) (41)
Systematic detection of internal symmetry in proteins using CE-Symm. (2014) (41)
PLoS Computational Biology: A New Community Journal (2005) (41)
BioLit: integrating biological literature with databases (2008) (39)
Computational Biology Resources Lack Persistence and Usability (2008) (39)
Rethinking Proteasome Evolution: Two Novel Bacterial Proteasomes (2008) (39)
Nothing about protein structure classification makes sense except in the light of evolution. (2009) (38)
CASP and CAFASP experiments and their findings. (2003) (38)
Curation of complex, context-dependent immunological data (2006) (38)
Developing multi-target therapeutics to fine-tune the evolutionary dynamics of the cancer ecosystem (2015) (38)
Phytoecdysteroid profiles in seeds of Sida spp. (Malvaceae). (2001) (38)
Delineation of Polypharmacology across the Human Structural Kinome Using a Functional Site Interaction Fingerprint Approach. (2016) (36)
The origin of a derived superkingdom: how a gram-positive bacterium crossed the desert to become an archaeon (2011) (35)
Macromolecular Crystallographic Information File. (1997) (35)
A New Scoring Function and Associated Statistical Significance for Structure Alignment by CE (2004) (35)
Superimposé: a 3D structural superposition server (2008) (35)
Design and application of PDBlib, a C++ macromolecular class library (1994) (34)
Ten Simple Rules for Cultivating Open Science and Collaborative R&D (2013) (33)
Biocurators: Contributors to the World of Science (2006) (33)
Insights into the binding mode of MEK type-III inhibitors. A step towards discovering and designing allosteric kinase inhibitors across the human kinome (2016) (33)
The Small β-Barrel Domain: A Survey-Based Structural Analysis. (2018) (32)
Wiggle—Predicting Functionally Flexible Regions from Primary Sequence (2006) (32)
Structural analysis of polarizing indels: an emerging consensus on the root of the tree of life (2009) (32)
The apoptosis database (2003) (31)
Peptide Identification by Database Search of Mixture Tandem Mass Spectra* (2011) (30)
Institutional Profile: University of California San Diego Pharmacogenomics Education Program (PharmGenEd™): bridging the gap between science and practice. (2011) (30)
Macromolecular dictionary (mmCIF) (2006) (30)
Identification and ecdysteroid antagonist activity of three oligostilbenes from the seeds of Carex pendula (Cyperaceae). (2001) (29)
What Do I Want from the Publisher of the Future? (2010) (28)
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (2007) (27)
Multiscale modeling of the causal functional roles of nsSNPs in a genome-wide association study: application to hypoxia (2013) (26)
Zeta Inhibitory Peptide Disrupts Electrostatic Interactions That Maintain Atypical Protein Kinase C in Its Active Conformation on the Scaffold p62* (2015) (26)
Achievements and challenges in structural bioinformatics and computational biophysics (2014) (26)
The Protein Data Bank and lessons in data management (2004) (26)
Antibacterial mechanisms identified through structural systems pharmacology (2013) (26)
Topic Pages: PLoS Computational Biology Meets Wikipedia (2012) (24)
Ten Simple Rules for Organizing a Scientific Meeting (2008) (24)
Building the biomedical data science workforce (2017) (24)
A comparative proteomics resource: proteins of Arabidopsis thaliana (2003) (24)
What Big Data means to me (2014) (23)
Protein structure resources. (2002) (23)
Assigning new GO annotations to protein data bank sequences by combining structure and sequence homology (2005) (23)
Structural Insights into Characterizing Binding Sites in Epidermal Growth Factor Receptor Kinase Mutants (2018) (22)
IL-13 is a driver of COVID-19 severity (2021) (22)
Improving The Future of Research Communications and e-Scholarship (Dagstuhl Perspectives Workshop 11331) (2015) (22)
Multipolar representation of protein structure (2006) (22)
I Am Not a Scientist, I Am a Number (2008) (21)
Word add-in for ontology recognition: semantic enrichment of scientific literature (2010) (21)
An analysis of the Protein Data Bank in search of temporal and global trends (1999) (21)
The Protein Data Bank: A Case Study in Management of Community Data (2004) (20)
Realism about PDB (2007) (20)
Ten Simple Rules for Selecting a Postdoctoral Position (2006) (20)
Combinatorial Approach for Large-scale Identification of Linked Peptides from Tandem Mass Spectrometry Spectra* (2014) (20)
Ten Simple Rules for Doing Your Best Research, According to Hamming (2007) (20)
Anti-Infectious Drug Repurposing Using an Integrated Chemical Genomics and Structural Systems Biology Approach (2013) (20)
Computational Prediction of Potential Inhibitors of the Main Protease of SARS-CoV-2 (2020) (19)
WPDB– PC Windows‐based interrogation of macromolecular structure (1995) (18)
Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm (2018) (18)
Phytoecdysteroids in seeds and plants of Rhagodia baccata (Labill.) Moq. (Chenopodiaceae). (1999) (18)
MixGF: Spectral Probabilities for Mixture Spectra from more than One Peptide* (2014) (17)
dConsensus: a tool for displaying domain assignments by multiple structure-based algorithms and for construction of a consensus assignment (2010) (17)
Ten Simple Rules To Commercialize Scientific Research (2012) (17)
Building an automated classification of DNA-binding protein domains (2002) (17)
BioEditor - Simplifying Macromolecular Structure Annotation (2003) (17)
Teaching Bioinformatics at the Secondary School Level (2011) (16)
Open Access: Taking Full Advantage of the Content (2008) (16)
An ontology driven architecture for derived representations of macromolecular structure (2002) (16)
Ten Simple Rules To Combine Teaching and Research (2009) (16)
Conserved motifs in voltage-sensing and pore-forming modules of voltage-gated ion channel proteins. (2007) (16)
High-throughput identification of interacting protein-protein binding sites (2007) (16)
Identifying allosteric fluctuation transitions between different protein conformational states as applied to Cyclin Dependent Kinase 2 (2007) (16)
TRANSLATING BIOLOGY: TEXT MINING TOOLS THAT WORK. (2008) (15)
Translational Health Disparities Research in a Data-Rich World (2019) (15)
Synthesis and biological activities of turkesterone 11α-acyl derivatives (2003) (15)
Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction (2006) (14)
The encyclopedia of life project: Grid software and deployment (2009) (14)
Ten Simple Rules for Writing a PLOS Ten Simple Rules Article (2014) (14)
Ten Simple Rules for Graduate Students (2007) (14)
Con-Struct Map: a comparative contact map analysis tool (2007) (13)
Improving Future Research Communication and e-Scholarship: A Summary of Findings (2012) (13)
Design and implementation of a collaborative molecular graphics environment. (2001) (13)
Statistically rigorous automated protein annotation (2004) (13)
Real-world evidence for improved outcomes with histamine antagonists and aspirin in 22,560 COVID-19 patients (2021) (13)
Proceedings of the eighth annual international conference on Research in computational molecular biology (2004) (12)
Grid Workflow Software for a High-Throughput Proteome Annotation Pipeline (2004) (12)
The New Biology and the Grid (2003) (12)
Let's Make Gender Diversity in Data Science a Priority Right from the Start (2015) (12)
Ecdysteroid 7,9(11)-dien-6-ones as potential photoaffinity labels for ecdysteroid binding proteins (2002) (11)
Confronting the Ethical Challenges of Big Data in Public Health (2015) (11)
RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank (2014) (11)
The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures (2003) (11)
A case study of high-throughput biological data processing on parallel platforms (2004) (11)
Analysis of the Human Kinome Using Methods Including Fold Recognition Reveals Two Novel Kinases (2008) (11)
Save the tree of life or get lost in the woods (2010) (11)
The mmCIF dictionary: community review and final approval (1996) (11)
Real‐world evidence from over one million COVID‐19 vaccinations is consistent with reactivation of the varicella‐zoster virus (2022) (10)
Ten Simple Rules to Protect Your Intellectual Property (2012) (10)
Telemedicine, Genomics and Personalized Medicine: Synergies and Challenges (2011) (10)
Detection of circular permutations within protein structures using CE-CP (2015) (10)
Cobweb: a Java applet for network exploration and visualisation (2011) (10)
Overview of Current Type I/II Kinase Inhibitors (2018) (10)
A biologist's guide to synchrotron facilities: the BioSync web resource. (2002) (10)
Protein data representation and query using optimized data decomposition (1997) (10)
Integration of open access literature into the RCSB Protein Data Bank using BioLit (2010) (10)
Quality assurance for the query and distribution systems of the RCSB Protein Data Bank (2011) (10)
CKAAPs DB: a Conserved Key Amino Acid Positions DataBase (2002) (9)
Grid Portal Interface for Interactive Use and Monitoring of High-Throughput Proteome Annotation (2004) (8)
Protein Structures: From Famine to Feast (2002) (8)
Data Acquisition, Curation, and Use For a Continuously Learning Health System: A Vital Direction for Health and Health Care (2016) (8)
The evolution of the RCSB Protein Data Bank website (2011) (8)
Structural biology meets data science: does anything change? (2018) (8)
The structure of aqua[3-ethoxy-2-oxobutyraldehyde bis(thiosemicarbazonato)]zinc(II) (1980) (8)
Protein structure evolution and the SCOP database. (2003) (7)
BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank (2017) (7)
Will Widgets and Semantic Tagging Change Computational Biology? (2010) (7)
Ten simple rules in considering a career in academia versus government (2017) (7)
Macromolecular query language (MMQL): prototype data model and implementation. (1994) (7)
Ten simple rules for starting (and sustaining) an academic data science initiative (2020) (7)
An integrated workflow for proteome-wide off-target identification and polypharmacology drug design (2012) (7)
CKAAPs DB: a conserved key amino acid positions database (2001) (7)
A Comparative Analysis of COVID-19 Vaccines Based on over 580,000 Cases from the Vaccination Adverse Event Reporting System (2022) (7)
The Urfold: Structural similarity just above the superfold level? (2019) (7)
8-O-acetylharpagide is not an ecdysteroid agonist. (2001) (7)
Harnessing systematic protein-ligand interaction fingerprints for drug discovery. (2022) (6)
Classification and use of macromolecular data (2006) (6)
Ten Simple Rules for avoiding and resolving conflicts with your colleagues (2019) (6)
Author response: How open science helps researchers succeed (2016) (6)
Is “bioinformatics” dead? (2021) (6)
CIF Applications. IX. A new approach for representing and manipulating STAR files (1998) (6)
A Turn-Key Approach for Large-Scale Identification of Complex Posttranslational Modifications (2014) (6)
Design and use of a software framework to obtain information derived from macromolecular structure data (1995) (6)
Correction to "A Machine Learning-Based Method To Improve Docking Scoring Functions and Its Application to Drug Repurposing" (2011) (6)
Ten Simple Rules for Getting Ahead as a Computational Biologist in Academia (2011) (6)
Resolving a distribution of charge into intrinsic multipole moments: a rankwise distributed multipole analysis. (2008) (6)
Receptor databases and computational websites for ligand binding. (2012) (6)
EVOLUTION STUDIED USING PROTEIN STRUCTURE (2008) (5)
Playing catch-up in building an open research commons (2022) (5)
Folding and binding: Protein–nucleic acid interactions (2000) (5)
Why it takes a village to manage and share data (2021) (5)
Ten Simple Rules for Lifelong Learning, According to Hamming (2015) (5)
The Plasmodium falciparum Drugome And Its Polypharmacological Implications (2016) (5)
Revealing acquired resistance mechanisms of kinase-targeted drugs using an on-the-fly, function-site interaction fingerprint approach. (2020) (5)
Protein crystal oscillation film data processing: a comparative study (1981) (5)
DOIs for DICOM raw images: enabling science reproducibility. (2015) (5)
Real‐world evidence for preventive effects of statins on cancer incidence: A trans‐Atlantic analysis (2021) (5)
Comprar Structural Bioinformatics | Jenny Gu | 9780470181058 | Wiley (2008) (5)
Coarse-graining the electrostatic potential via distributed multipole expansions (2011) (5)
Predicting the Polypharmacology of Drugs: Identifying New Uses through Chemoinformatics, Structural Informatics, and Molecular Modeling‐Based Approaches (2012) (5)
Ten Simple Rules for Chairing a Scientific Session (2009) (4)
A new approach to scientific dissemination (2008) (4)
Development of Internet-based multimedia applications. (1999) (4)
Quality assurance and intellectual property rights in advancing biodiversity data publications (2012) (4)
Ten Simple Rules for Approaching a New Job (2014) (4)
Overview of Structural Bioinformatics (2005) (4)
Force 11 White Paper : Improving The Future of Research Communications and e-Scholarship February (2012) (4)
Bioinformatics meets data mining: time to dance? (2000) (4)
Announcement of the BioSync web site (2001) (4)
A Birds-Eye (Re)View of Acid-Suppression Drugs, COVID-19, and the Highly Variable Literature (2021) (4)
The structure and heavy-metal-ion-binding sites of horse spleen apoferritin. (1980) (4)
Should biomedical research be like Airbnb? (2017) (4)
Ten simple rules for writing scientific op-ed articles (2020) (4)
Developing Protein Documentaries and Other Multimedia Presentations for Molecular Biology (1998) (3)
A Database of Pairwise Aligned 3-D Structures for the Acetylcholinesterases, Lipases and Other Homologous Proteins (1998) (3)
Machine Learning for Classification of Protein Helix Capping Motifs (2019) (3)
The RCSB Protein Data Bank: site functionality and bioinformatics use cases (2011) (3)
The Future of Bioinformatics (2021) (3)
Deep Generative Models of Protein Structure Uncover Distant Relationships Across a Continuous Fold Space (2023) (3)
Developing international open science collaborations: Funder reflections on the Open Science Prize (2017) (3)
CIF Applications. VIII. pdb2cif: translating PDB entries into mmCIF format (1998) (3)
Catalysis and regulation. Proteins. Web alert. (1998) (3)
The status of structural genomics (2003) (3)
Other structure-based databases. (2003) (3)
The International Society for Computational Biology 10th Anniversary (2007) (3)
Ten simple rules for researchers while in isolation from a pandemic (2020) (3)
Informatics-enabled citizen science to advance health equity (2021) (3)
Membranes. Engineering and design. (2001) (3)
Exploration of Dark Chemical Genomics Space via Portal Learning: Applied to Targeting the Undruggable Genome and COVID-19 Anti-Infective Polypharmacology (2021) (3)
From biomedical cloud platforms to microservices: next steps in FAIR data and analysis (2022) (3)
PDBtool: An interactive browser and geometry checker for protein structures (1996) (3)
Title: The Most Difference in Means: A Statistic for Null and Near-Zero Results (2022) (2)
Communication of scientific information: is it time to reassess? (2013) (2)
Deep Learning of Protein Structural Classes: Any Evidence for an ‘Urfold’? (2020) (2)
Carbohydrates and glycoconjugates biophysical methods. (1999) (2)
Let's Make Those Book Chapters Open Too! (2013) (2)
3-Thioxo-2-pyridinecarboxylic acid, C6H5NO2S. Redetermination of the structure (1983) (2)
Ten Years of PLoS‡ Computational Biology: A Decade of Appreciation and Innovation (2015) (2)
Dicytosinium tetrachlorozincate, [C4H6N3O]2[ZnCl4] (1983) (2)
MSG (Molecular Scene Generator): a Web-based application for the visualization of macromolecular structures (1999) (2)
Ten simple rules for more objective decision-making (2020) (2)
One thousand simple rules (2018) (2)
Statistical and Visual Morph Movie Analysis of Crystallographic Mutant Selection Bias in Protein Mutation Resource Data (2004) (2)
Learning How to Run a Lab: Interviews with Principal Investigators (2013) (2)
Protein-nucleic acid interactions. Folding and binding. (2001) (2)
Structure of a potent neuromuscular blocking agent: Caracurine-II dimethochloride octahydrate, [C40H44N4O2]2+·2CI−·8H2O (1985) (2)
Macromolecular structure databases: past progress and future challenges. (1998) (2)
Changes to NIH Grant System May Backfire (2008) (2)
PLoS Computational Biology Conference Postcards from PSB 2010 (2010) (2)
Code Generation through Annotation of Macromolecular Structure Data (1997) (2)
Unix for VMS users (1990) (2)
The macromolecular CIF dicitionary (1993) (2)
Software Discovery Index Workshop Report (2015) (2)
Ten Simple Rules for Starting a Company (2012) (2)
Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004, San Diego, California, USA, March 27-31, 2004 (2004) (1)
Use of conserved key amino acid positions to morph protein folds. (2002) (1)
Protein-nucleic acid interactions folding and binding. Web alert. (1998) (1)
The reaming of life: based on the 2010 Jim Gray eScience Award Lecture (2013) (1)
Protein crystallographic computing in the UK - a collaborative project (1981) (1)
Statistical and visual morph movie analysis of crystallographic mutant selection bias in protein mutation resource data (2003) (1)
Genome Evolution Studied Through Protein Structure (2010) (1)
Prop3D: A flexible, Python-based platform for machine learning with protein structural properties and biophysical data (2022) (1)
Combinatorial Extension ( CE ) using a Composite Property Description . A New Approach to 3-D Structure Alignment and its Application to the Protein Kinase Family (1)
Multiscale modeling of the causal functional roles of nsSNPs in a genome-wide association study: application to hypoxia (2013) (1)
A Review of 2009 for PLoS Computational Biology (2010) (1)
Translating PDB entries into mmCIF (1996) (1)
Data Science: Transformation of Research and Scholarship (2017) (1)
Ten simple rules for considering preprints (2016) (1)
The PDB Data Uniformity Project | NIST (2001) (1)
The Protein Data Bank: Unifying the Archive | NIST (2002) (1)
The Most Difference in Means: A Statistic for the Strength of Null and Near-Zero Results (2022) (1)
The Structure of Small Beta Barrels (2017) (1)
Contra-Analysis: Prioritizing Meaningful Effect Size in Scientific Research (2022) (1)
Revealing acquired resistance mechanisms of kinase-targeted drugs using an on-the-fly, function-site interaction fingerprint approach (2019) (1)
Windows-based interrogation of macromolecular structure (1995) (1)
The curse of the protein ribbon diagram (2022) (1)
A QM/MM Study of Acylphosphatase Reveals the Nucleophilic-Attack and Ensuing Carbonyl-Assisted Catalytic Mechanisms (2020) (1)
Protein Structures : From Famine to Feast Thousands of protein structures are known and accessible . Structural genomics is building on new technology to fill in the missing pieces . (1)
PLOS Computational Biology 2016 Reviewer and Editorial Board Thank You (2017) (1)
Life is three-dimensional, and it begins with molecules (2017) (1)
Big data in biomedicine - An NIH perspective (2015) (1)
Clinical Evidence for Improved Outcomes with Histamine Antagonists and Aspirin in 22,560 COVID-19 Patients (2021) (1)
Ten Simple Rules for a Good Poster (2007) (1)
Advance in Reversible Covalent Kinase Inhibitors (2021) (1)
Correction: Ten Simple Rules for Selecting a Postdoctoral Position (2006) (1)
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Explainable Deep Generative Models, Ancestral Fragments, and Murky Regions of the Protein Structure Universe (2022) (0)
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Multiple alignments of protein structures and their application to sequence annotation with hidden markov models (2003) (0)
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Ten simple rules for using entrepreneurship skills to improve research careers and culture (2022) (0)
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NIH Response to the Two Reports of Advisory Committee to the Director (2015) (0)
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Softwareof open access literature into the RCSB Protein Data Bank using BioLit (2010) (0)
Homology model file (2013) (0)
A local macromolecular structure database for crystallographic laboratories (1996) (0)
Addendum: The FAIR Guiding Principles for scientific data management and stewardship (2019) (0)
Pharmaceutical Sciences in a Virtual World (2009) (0)
Macromolecular assemblages theory and simulation. Web alert. (1998) (0)
Mac OS 8 Web server cookbook (1998) (0)
4 – Introductory File Management (2003) (0)
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Caracurine-II dimethochloride octahydrate, a potent neuromuscular blocking agent (1984) (0)
From biomedical cloud platforms to microservices: next steps in FAIR data and analysis (2022) (0)
Correction to "Structural Insights into Characterizing Binding Sites in Epidermal Growth Factor Receptor Kinase Mutants" (2021) (0)
Combating Chagas Disease Through Inhibition of Tiam1, a Rho GTPase Guanine Nucleotide Exchange Factor (2016) (0)
Ten simple rules for serving as an editor (2023) (0)
The structure of erabutoxin B at 1.4 Å resolution. Structure/function relations including functional implications of the extensive water structure and side-chain disorder in the reactive site (1984) (0)
Techniques for Modeling the Electrostatic Field of Large Biomolecules (2010) (0)
Ten simple rules for improving communication among scientists (2022) (0)
A Review of 2008 for PLoS Computational Biology (2009) (0)
ISMB 2010 Organization (2010) (0)
TB-Drugome Workflow Input Files (2013) (0)
Web alert. Folding and binding. Protein-nucleic acid interactions. (1997) (0)
A Review of 2011 for PLoS Computational Biology (2012) (0)
The Least Difference in Means: A Statistic for Effect Size Strength and Practical Significance (2022) (0)
Inter-subunit interactions and metal binding sites in horse spleen apoferritin (1981) (0)
MAD-FC: A Fold Change Visualization with Readability, Proportionality, and Symmetry (2023) (0)
Chapter 8-"-------------------------------- Genonle Evolution Studied Through Protein Structure (2010) (0)
Consensus approach for benchmarking domain assignment in protein structures (2003) (0)
Desktop crystallography – the next generation of computers (1987) (0)
Ten simple rules for starting research in your late teens (2020) (0)
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Structural Bioinformatics with an Emphasis on Biological Data Representation and Analysis (2012) (0)
Introduction to Informatics Approaches in Structural Genomics: Modeling and Representation of Function from Macromolecular STructure (2005) (0)
Contra-Analysis for Determining Negligible Effect Size in Scientific Research (2023) (0)
p 62 is a molecular target for ZIP 1 Zeta Inhibitory Peptide Disrupts Electrostatic Interactions That Maintain Atypical Protein Kinase C in Its Active Conformation on the Scaffold p 62 (2015) (0)
Parallel Processing on Large Redudant Biological Data Sets: Protein Structures Classification with CEPAR (2003) (0)
Structural Analysis of Polarizing Indels Argues the Root of the Tree of Life is Near the Chloroflexi (2009) (0)
Ten simple rules when considering retirement (2018) (0)
UNIX for Open VMS Users, 3rd Edition (2003) (0)
Rule 1 : Do Not Accept a Review Assignment unless You Can Accomplish the Task in the Requested Timeframe — Learn to Say (2014) (0)
Homology Model list (2013) (0)
Web alert: Engineering and design: Membrane proteins: Lipids (2000) (0)
WHAT DOES DATABASE FEDERATION MEAN TO CRYSTALLOGRAPHY ? (1998) (0)
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12 – Monitoring and Utilizing System Resources (2003) (0)
The Future of Pharmacy Informatics (2009) (0)
Protein kinase explorer (2011) (0)
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Rigid Scaffolds are Promising for Designing Macrocyclic Kinase Inhibitors (2023) (0)
High performance computational biology-past progress and future promise (2003) (0)
Ten simple rules for organizing a special session at a scientific conference (2022) (0)
Protein-nucleic acid interactions. (2001) (0)
One Year of PLoS Computational Biology (2006) (0)
7 – Devices, Queues, and Background Processing (2003) (0)
Science's Policy on Data Deposition (2002) (0)
Discrepancies in purified and cellular PKMζ inhibition profiles invalidate its proposed role as a mediator of memory (2012) (0)
Primary Protein and Nucleic Acid Three‐dimensional Structure Databases (2002) (0)
The RCSB PDB Protein Comparison Tool (2011) (0)
Networking for crystallographers (1988) (0)
The Protein Data Bank: data distribution and query functionality (2002) (0)
Systematic Analysis of KRAS-ligand Interaction Modes and Flexibilities Reveals the Binding Characteristics (2023) (0)
Solved structures list (2013) (0)
8 – File Management Revisited (2003) (0)
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TRANSLATING BIOLOGY: TEXT MINING TOOLS THAT WORK – Session Introduction (2007) (0)
Engineering and design membrane proteins lipids. Web alert. (2000) (0)
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Systems biology of the structural proteome The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters (2016) (0)
Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computional Biology 2004 (ISMB/ECCB 2004) (2004) (0)
TB Protein information file (2013) (0)
Seven Years; It's Time for a Change (2012) (0)
SMAP configuration file (2013) (0)
P01 GM63208-01A1 (2006) (0)
The era of open (2013) (0)
ISMB-2000: Bioinformatics enters a new millennium (2000) (0)
A Review of 2010 for PLoS Computational Biology (2011) (0)
Web Alert: Biophysical methods (2001) (0)
10 – Shell Programming (2003) (0)
Lipids engineering and design membrane proteins. Web alert. (1998) (0)
Free access to publicly funded databases is vital (2003) (0)
INTRODUCTION TO INFORMATICS APPLICATIONS IN STRUCTURAL GENOMICS (2003) (0)
A Cookbook for Serving the Internet for UNIX (1996) (0)
Keynote: Philip Bourne (2014) (0)
X-ray crystallographic analysis of horse spleen apoferritin (1981) (0)
Binding Site-enhanced Sequence Pretraining and Out-of-cluster Meta-learning Predict Genome-Wide Chemical-Protein Interactions for Dark Proteins (2022) (0)
Developing Computational Biology (2007) (0)
Introduction to informatics approaches in structural genomics (2005) (0)
The Rankwise Distributed Multipole Analysis (RWDMA) of the Electrostatic Field of Large Biomolecules (2009) (0)
A Systematic Approach to Identifying Protein-Ligand Binding Profiles on a Proteome Scale (2008) (0)
What Does Open Data Mean to Data Science (2018) (0)
End-to-end sequence-structure-function meta-learning predicts genome-wide chemical-protein interactions for dark proteins (2023) (0)
Fast Substructure Searching Using the Conformation Likeness Method (1998) (0)
Computer and Informatics Basics (2009) (0)
Digital research/analog publishing – one scientist’s view (2011) (0)
CASP AND OTHER COMMUNITY-WIDE ASSESSMENTS TO ADVANCE THE FIELD OF STRUCTURE PREDICTION (2008) (0)
Protein Data Resources (2004) (0)
INFORMATION RESOURCES IN PHARMACY AND HEALTHCARE Corresponding author : (2012) (0)
Thoughts on the future of scientific dissemination (2007) (0)
Web alert. Catalysis and regulation. Proteins. (1997) (0)
Comparison of the Charge Distribution of Protein Molecules via Multipole Parameterizations (2011) (0)
Data Science @ the NIH: What is Happening & What is Coming: A Conversation (2015) (0)
CBMS 2006 Special Track Program Committee & Reviewers (2006) (0)
Web alert. Theory and simulation. Macromolecular assemblages. (1997) (0)
Coxibs: recent controversies (2005) (0)
Special Track Program Committee and Reviewers (2006) (0)
What Is Pharmacy Informatics (2009) (0)

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