Robert Gentleman | Academic Influence

Robert Gentleman 's AcademicInfluence.com Rankings

Robert Gentleman

Biology

#1158

World Rank

#1970

Historical Rank

Bioinformatics

#25

World Rank

#25

Historical Rank

biology Degrees

Robert Gentleman

Mathematics

#3644

World Rank

#5345

Historical Rank

Statistics

#204

World Rank

#257

Historical Rank

mathematics Degrees

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Biology
Mathematics

Robert Gentleman 's Degrees

PhD Statistics University of Washington
Bachelors Mathematics University of British Columbia

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Why Is Robert Gentleman Influential?

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According to Wikipedia, Robert Clifford Gentleman is a Canadian statistician and bioinformatician who is currently the founding executive director of the Center for Computational Biomedicine at Harvard Medical School. He was previously the vice president of computational biology at 23andMe. Gentleman is recognized, along with Ross Ihaka, as one of the originators of the R programming language and the Bioconductor project.

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Robert Gentleman 's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Bioconductor: open software development for computational biology and bioinformatics (2004) (12224)
Circulating microRNAs as stable blood-based markers for cancer detection (2008) (7285)
gplots: Various R Programming Tools for Plotting Data (2015) (2744)
Software for Computing and Annotating Genomic Ranges (2013) (2663)
Orchestrating high-throughput genomic analysis with Bioconductor (2015) (2623)
Bioinformatics and Computational Biology Solutions Using R and Bioconductor (Statistics for Biology and Health) (2005) (2247)
A Model-Based Background Adjustment for Oligonucleotide Expression Arrays (2004) (1944)
Using GOstats to test gene lists for GO term association (2007) (1856)
Comprehensive genomic analysis identifies SOX2 as a frequently amplified gene in small-cell lung cancer (2012) (886)
Recurrent R-spondin fusions in colon cancer (2012) (877)
arrayQualityMetrics—a bioconductor package for quality assessment of microarray data (2008) (851)
Independent filtering increases detection power for high-throughput experiments (2010) (662)
rtracklayer: an R package for interfacing with genome browsers (2009) (545)
The mutation spectrum revealed by paired genome sequences from a lung cancer patient (2010) (522)
A comprehensive transcriptional portrait of human cancer cell lines (2014) (520)
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data (2009) (459)
Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming. (2010) (454)
flowCore: a Bioconductor package for high throughput flow cytometry (2009) (426)
Gene expression profile of adult T-cell acute lymphocytic leukemia identifies distinct subsets of patients with different response to therapy and survival. (2004) (395)
DUX4 activates germline genes, retroelements, and immune mediators: implications for facioscapulohumeral dystrophy. (2012) (356)
MicroRNA Discovery and Profiling in Human Embryonic Stem Cells by Deep Sequencing of Small RNA Libraries (2008) (323)
Open source software for the analysis of microarray data. (2003) (293)
Statistical Analyses and Reproducible Research (2007) (280)
The effects of hepatitis B virus integration into the genomes of hepatocellular carcinoma patients. (2012) (249)
Extensions to gene set enrichment (2007) (224)
Maximum likelihood for interval censored data: Consistency and computation (1994) (211)
Multi-state Markov models for analysing incomplete disease history data with illustrations for HIV disease. (1994) (210)
Combined cDNA array comparative genomic hybridization and serial analysis of gene expression analysis of breast tumor progression. (2006) (197)
Genome and transcriptome sequencing of lung cancers reveal diverse mutational and splicing events (2012) (189)
Association of valproate‐induced teratogenesis with histone deacetylase inhibition in vivo (2005) (181)
Reproducible Research: A Bioinformatics Case Study (2005) (148)
Gene Expression Profiles of B-lineage Adult Acute Lymphocytic Leukemia Reveal Genetic Patterns that Identify Lineage Derivation and Distinct Mechanisms of Transformation (2005) (148)
Global expression changes of constitutive and hormonally regulated genes during endometrial neoplastic transformation. (2001) (146)
Differential genomic targeting of the transcription factor TAL1 in alternate haematopoietic lineages (2010) (144)
Graphs in molecular biology (2007) (135)
Supervised Machine Learning (2008) (133)
Recurrent Loss of NFE2L2 Exon 2 Is a Mechanism for Nrf2 Pathway Activation in Human Cancers. (2016) (133)
Per‐channel basis normalization methods for flow cytometry data (2009) (113)
Genetic and epigenetic determinants of neurogenesis and myogenesis. (2012) (113)
Bioconductor Case Studies (2008) (107)
Classification Using Generalized Partial Least Squares (2005) (97)
Network structures and algorithms in Bioconductor (2005) (91)
Prediction and Quantification of Splice Events from RNA-Seq Data (2016) (87)
R Programming for Bioinformatics (2008) (84)
Local modeling of global interactome networks (2005) (81)
An integrative genomic approach identifies p73 and p63 as activators of miR-200 microRNA family transcription (2011) (77)
Towards BioDBcore: a community-defined information specification for biological databases (2011) (71)
Lexical Scope and Statistical Computing (2000) (70)
Using flowViz to visualize flow cytometry data (2008) (70)
Local full likelihood estimation for the proportional hazards model. (1991) (63)
Gene set enrichment analysis using linear models and diagnostics (2008) (59)
Complex regulation of ADAR-mediated RNA-editing across tissues (2016) (59)
Visualizing and Distances Using GO (2006) (58)
Modeling synthetic lethality (2008) (57)
An extensible application for assembling annotation for genomic data (2003) (57)
Towards BioDBcore: a community-defined information specification for biological databases (2010) (57)
Differential expression with the Bioconductor Project (2005) (56)
Hypergeometric Testing Used for Gene Set Enrichment Analysis (2008) (54)
Quality Assessment and Data Analysis for microRNA Expression Arrays (2008) (51)
A graph-theoretic approach to testing associations between disparate sources of functional genomics data (2004) (49)
Coverage and error models of protein-protein interaction data by directed graph analysis (2007) (48)
Using Go for Statistical Analyses (2004) (48)
Data quality assessment of ungated flow cytometry data in high throughput experiments (2007) (46)
Nonparametric estimation of the bivariate cdf for arbitrarily censored data (2002) (45)
Differential Gene Expression in Benign Prostate Epithelium of Men with and without Prostate Cancer: Evidence for a Prostate Cancer Field Effect (2010) (45)
Making the most of high-throughput protein-interaction data (2007) (45)
SELDI-TOF Mass Spectrometry Protein Data (2005) (44)
Graphical Methods for Censored Data (1991) (43)
matchprobes: a Bioconductor package for the sequence-matching of microarray probe elements (2004) (42)
Declining plasma fibrinogen alpha fragment identifies HER2-positive breast cancer patients and reverts to normal levels after surgery. (2006) (42)
Discriminative motif analysis of high-throughput dataset (2014) (36)
Distance Measures in DNA Microarray Data Analysis (2005) (35)
Various R Programming Tools for Plotting Data [R package gplots version 3.1.0] (2020) (35)
Disease risk scores for skin cancers (2021) (33)
Creating a data resource: what will it take to build a medical information commons? (2017) (32)
Data standards for flow cytometry. (2006) (32)
THE R ENVIRONMENT FOR STATISTICAL COMPUTING (2001) (31)
Current Topics in Computational Molecular Biology (2004) (31)
The anatomy of successful computational biology software (2013) (29)
Computational Algorithms for Censored-Data Problems Using Intersection Graphs (2001) (26)
Comparison of endogenous and overexpressed MyoD shows enhanced binding of physiologically bound sites (2013) (26)
Analyzing factorial designed microarray experiments (2004) (23)
Top-down standards will not serve systems biology (2006) (23)
gCMAP: user-friendly connectivity mapping with R (2014) (23)
Genomic representations using concatenates of Type IIB restriction endonuclease digestion fragments. (2004) (22)
Bayesian Error‐in‐Variable Survival Model for the Analysis of GeneChip Arrays (2005) (21)
Wavelet Thresholding with Bayesian False Discovery Rate Control (2005) (21)
Analyzing biological data using R: methods for graphs and networks. (2012) (21)
Making Sense of High-Throughput Protein-Protein Interaction Data (2005) (21)
Unsupervised Machine Learning (2008) (21)
Querying Genomic Databases: Refining the Connectivity Map (2012) (20)
Reply to Talloen et al.: Independent filtering is a generic approach that needs domain specific adaptation (2010) (20)
Estimating node degree in bait-prey graphs (2008) (19)
Constrained estimation and likelihood intervals for censored data (2005) (17)
Expression with the Bioconductor Project (2004) (17)
DATABASE: A new forum for biological databases and curation (2009) (16)
Exploratory methods in survival analysis (1995) (16)
Resampling Methods (2003) (16)
Knowledge based identification of essential signaling from genome-scale siRNA experiments (2009) (15)
The graft response to transplantation: a gene expression profile analysis. (2003) (15)
Visualization and Annotation of Genomic Experiments (2003) (15)
Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x (2009) (15)
R Language (2011) (15)
Statistical Applications in Genetics and Molecular Biology Reproducible Research: A Bioinformatics Case Study (2005) (13)
An Introduction to Bioconductor’s ExpressionSet Class (2007) (12)
GGtools: analysis of genetics of gene expression in bioconductor (2007) (11)
iFlow: A Graphical User Interface for Flow Cytometry Tools in Bioconductor (2009) (11)
Supplemental Information Recurrent Loss of NFE 2 L 2 Exon 2 Is a Mechanism for Nrf 2 Pathway Activation in Human Cancers (2016) (10)
Population size estimation for the bowhead whale, Balaena mysticetus, based on 1985 visual and acoustic data (1988) (10)
Rintact: enabling computational analysis of molecular interaction data from the IntAct repository (2008) (9)
Case Studies Using Graphs on Biological Data (2005) (9)
Design and Analysis of DNA Microarray Investigations (2005) (8)
Developing Statistical Software in Fortran 95 (2005) (8)
VariantTools: an extensible framework for developing and testing variant callers (2017) (8)
Visualizing Genomic Data (2006) (8)
Gene Set Enrichment Analysis (2008) (8)
Bioconductor Software for Graphs (2005) (7)
On the synthesis of microarray experiments (2005) (6)
Enhancing reproducibility and collaboration via management of R package cohorts (2015) (6)
Order Theory and Nonparametric Maximum Likelihood for Interval Censored Data (1998) (6)
Statistical Quality Control of HIV-1 ELISA Test Performance (1994) (6)
Integrative Analysis of Two Cell Lines Derived from a Non-Small-Lung Cancer Patient - A Panomics Approach (2013) (5)
Personal Crunching: A Review of BUGS: Bayesian Inference Using Gibbs Sampling (1997) (5)
Demographic, spatial, and temporal dietary intake patterns among 526,774 23andMe research participants (2020) (5)
How To Use GOstats Testing Gene Lists for GO Term Association (2016) (5)
Shared and Distinct Genetic Influences Between Cognitive Domains and Psychiatric Disorder Risk Based on Genome-Wide Data (2020) (4)
Interpreting Genetics Of Gene Expression: Integrative Architecture In Bioconductor (2008) (4)
SGDI: System for Genomic Data Integration (2007) (4)
R and Bioconductor Introduction (2008) (4)
Bioinformatics Software Engineering (2005) (4)
Identification of aberrant pathway and network activity from high-throughput data. (2011) (4)
Using Categories dened by Chromosome Bands (2008) (3)
Some perspectives on statistical computing (2004) (3)
Minimal Covers of Maximal Cliques for Interval Graphs (2009) (3)
Addressing the accuracy of direct-to-consumer genetic testing (2019) (3)
Demographic, spatial and temporal dietary intake patterns among 526 774 23andMe research participants (2020) (3)
S4 Classes in 15 Pages More or Less (2002) (3)
Processing Affymetrix Expression Data (2008) (3)
Weak Order Partitioning of Interval Orders with Applications to Interval Censored Data (1998) (3)
Java and Dylan (2000) (2)
Assessing The Role Of Multi-protein Complexes In Determining Phenotype (2008) (2)
Object-Oriented Programming in R (2008) (2)
Exponential Integral and Incomplete Gamma Function [R package expint version 0.1-6] (2019) (2)
Using Categories defined by Chromosome Bands (2008) (2)
Large-scale trans-ethnic replication and discovery of genetic associations for rare diseases with self-reported medical data (2021) (2)
Bioconductor: software and development strategies for statistical genomics (2005) (2)
R and Bioconductor Packages in Bioinformatics: Towards Systems Biology (2010) (2)
SHARED AND DISTINCT GENETIC INFLUENCES BETWEEN COGNITIVE DOMAINS AND PSYCHIATRIC DISORDER RISK BASED ON GENOME-WIDE DATA (2021) (1)
Comparison of endogenous and overexpressed MyoD shows enhanced binding of physiologically bound sites (2013) (1)
An Environment-Wide Study of Adult Cognitive Performance in the 23andMe Cohort (2019) (1)
Meta-data Resources and Tools in Bioconductor (2005) (1)
The ALL Dataset (2008) (1)
Statistical Applications in Genetics and Molecular Biology (2005) (1)
Genomic variant calling: Flexible tools and a diagnostic data set (2015) (1)
Personal Crunching: Operating Systems for PCs (1997) (1)
DIFFERENTIAL GENE EXPRESSION IN NORMAL PROSTATE EPITHELIUM OF MEN WITH AND WITHOUT PROSTATE CANCER: EVIDENCE FOR A PROSTATE CANCER FIELD EFFECT (2008) (1)
Section : Computational Methods for High Throughput Genetic Analysis-Expression profiling Article : Differential Expression with the Bioconductor Project (2004) (1)
Erratum: The anatomy of successful computational biology software (2014) (1)
A graphical approach to the analysis of censored data (2005) (1)
High throughput ﬂow cytometry analysis with Bioconductor (2009) (1)
Assessing network structure in the presence of measurement error (2007) (0)
Mobile Apps versus Web Browsers: A Comparison of Self-administered Survey Platforms (2018) (0)
Gene Expression Profiles of B-lineageAdult Acute Lymphocytic Leukemia Reveal Genetic Patterns that Identify Lineage Derivation and DistinctMechanisms of Transformation (2005) (0)
Differential gene expression in normal prostate epithelium of men with and without prostate cancer (2008) (0)
The 2.14 release of the R statistical language. (2011) (0)
Addressing the accuracy of direct-to-consumer genetic testing (2018) (0)
Personal Crunching: Review of S-PLUS 4.5 (1998) (0)
Bioconductor Project Bioconductor Project Working Papers Year Paper Differential Expression with the Bioconductor Project (2013) (0)
Gene expression Extensions to gene set enrichment (2007) (0)
Randomized and Balancing Allocation Schemes for Clinical Trials: Computational Perspectives on Design and Deployment (2012) (0)
Additional data file 1 (2007) (0)
Tutorials in Biostatistics, Vol. 1: Statistical Methods in Clinical Studies/Tutorials in Biostatistics, Vol. 2: Statistical Modelling of Complex Medical Data (2005) (0)
Microarray Quality Control (2005) (0)
Source Software for the Analysis of Microarray Data (0)
Book reviews (1996) (0)
C " " YOR 035 C " " YPL 241 C " " YBR 231 C " " YPL 129 W " " YDR 388 W " " (2018) (0)
Debugging and Profiling (2008) (0)
Personal Crunching: Welcome from the new “Personal Crunching” Column Editor (1996) (0)
1 Preprocessing Overview (0)
BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions (2023) (0)
expression profile analysis The graft response to transplantation: a gene (2015) (0)
PCpheno: assessing the role cellular organizational units in determining phenotype (2013) (0)
Quality Assessment and Data Analysis for microRNA Expression Arrays Supplementary Material (2008) (0)
Studies Using Graphs on Biological Data (2005) (0)
Foreign Language Interfaces (2008) (0)
Complex regulation of ADAR-mediated RNA-editing across tissues (2016) (0)
Identification of a LOH Region on Chromosome 9p Associated with a Specific Gene Expression Signature in Adult B-Lineage ALL through Integration of High Density Microarray Expression and SNP Analyses. (2004) (0)
HowTo: Querying online Data (2006) (0)
11 Analysis Overview (0)
Personal Crunching: A Peek at the Internet (1996) (0)
Software for Computing and Annotating Genomic Ranges The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters (2013) (0)
Input and Output in R (2008) (0)
Actuarial Functions and Heavy Tailed Distributions [R package actuar version 3.0-0] (2020) (0)
Design and Analysis of DNA Microarray Investigations. Richard M. Simon, Edward L. Korn, Lisa M. McShane, Michael D. Radmacher, George W. Wright, and Yingdong Zhao (2005) (0)
Synesthesia and Artistic (1997) (0)
Bioconductor Project Bioconductor Project Working Papers Year Paper Visualizing Genomic Data (2013) (0)
Querying On-line Resources (2005) (0)
Software for Genomic Data (2005) (0)
Two-sided binomial test on the data from Krogan and coworkers 11 (2011) (0)
Using graphs to relate expression data and protein-protein interaction data (2006) (0)
Microarray Quality Control. Wei Zhang, Ilya Shmulevich, and Jaakko Astola (2005) (0)
Disease risk scores for skin cancers (2021) (0)
Data Quality Assessment of Ungated Flow Cytometry Data in High (2007) (0)
Organisers Organising Committee General Information Maps Keynote & Invited Speakers Plenary Session [oggb4] Chair: Alain Vandal Genome Variant Calling: a Statistical Perspective Robert Gentleman Genentech Invited Session Contributed Sessions Methods 1 [oggb4] Chair: Thomas Yee Prediction and Confide (2011) (0)
DATABASE Editorial Board 2009 (2010) (0)
Personal Crunching: A Review of Systat 7.0 by SPSS (1998) (0)
Modeling with Objects (2001) (0)
Solutions to Exercises (2008) (0)
Introduction and Motivating Examples (2005) (0)
Personal Crunching: Statistical Computing Environments (1997) (0)
University of Groningen Development of genetic manipulation tools in Macrostomum lignano for dissection of molecular mechanisms of regeneration Wudarski, Jakub (2018) (0)
Current Topics in Computational Molecular Biology. Tao Jiang, Ying Xu, and Michael Q. Zhang (eds.) (2004) (0)
Creating a data resource: what will it take to build a medical information commons? (2017) (0)
Tumor Progression and Serial Analysis of Gene Expression Analysis of Breast Combined cDNA Array Comparative Genomic Hybridization (2006) (0)
R Language Fundamentals (2008) (0)
Working with Character Data (2008) (0)

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