Aleksandra Walczak

Aleksandra Walczak's AcademicInfluence.com Rankings

Aleksandra Walczak

Physics

#7891

World Rank

#9959

Historical Rank

Biophysics

#389

World Rank

#401

Historical Rank

physics Degrees

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Physics

Aleksandra Walczak's Degrees

Bachelors Physics University of Warsaw
Masters Biophysics University of Warsaw
PhD Biophysics University of California, Berkeley

Why Is Aleksandra Walczak Influential?

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According to Wikipedia, Aleksandra M. Walczak is a theoretical biophysicist. She works on stochastic gene expression at Ecole Normale Supérieure where she is a research director. Education Walczak completed her master's degree at Warsaw University, Poland in 2002, her PhD at University of California, San Diego in 2007, and was a post-doc until 2010 at Princeton University.

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Aleksandra Walczak's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Statistical mechanics for natural flocks of birds (2011) (548)
Maximum entropy models for antibody diversity (2009) (291)
Self-regulating gene: an exact solution. (2005) (248)
Statistical inference of the generation probability of T-cell receptors from sequence repertoires (2012) (238)
Predicting evolution (2017) (205)
Information transmission in genetic regulatory networks: a review (2011) (163)
High-throughput immune repertoire analysis with IGoR (2018) (159)
Social interactions dominate speed control in poising natural flocks near criticality (2013) (154)
Inferring processes underlying B-cell repertoire diversity (2015) (152)
The Past, Present, and Future of Immune Repertoire Biology – The Rise of Next-Generation Repertoire Analysis (2013) (150)
Live Imaging of Bicoid-Dependent Transcription in Drosophila Embryos (2013) (148)
Optimizing information flow in small genetic networks. (2009) (134)
Absolute rate theories of epigenetic stability. (2005) (129)
Quantifying selection in immune receptor repertoires (2014) (122)
OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs (2018) (113)
Flocking and Turning: a New Model for Self-organized Collective Motion (2014) (106)
Optimizing information flow in small genetic networks. II. Feed-forward interactions. (2009) (103)
Self-consistent proteomic field theory of stochastic gene switches. (2004) (102)
Genetic Diversity and the Structure of Genealogies in Rapidly Adapting Populations (2012) (100)
How a well-adapted immune system is organized (2014) (98)
Genetic Diversity in the Interference Selection Limit (2014) (87)
A Reassessment of IgM Memory Subsets in Humans (2015) (86)
Abduction and asylum in the lives of transcription factors (2010) (83)
Precise tracking of vaccine-responding T cell clones reveals convergent and personalized response in identical twins (2018) (82)
Predicting the spectrum of TCR repertoire sharing with a data‐driven model of recombination (2018) (82)
Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves (2016) (80)
Diversity of immune strategies explained by adaptation to pathogen statistics (2015) (75)
Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires (2016) (74)
Spectral solutions to stochastic models of gene expression with bursts and regulation. (2009) (72)
Local equilibrium in bird flocks (2015) (72)
The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional Architectures (2008) (68)
Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T cell memory formation after mild COVID-19 infection (2020) (66)
Fluctuating fitness shapes the clone-size distribution of immune repertoires (2015) (65)
Quantifying lymphocyte receptor diversity (2016) (63)
A stochastic spectral analysis of transcriptional regulatory cascades (2008) (62)
Dynamical maximum entropy approach to flocking. (2013) (61)
Signal Percolation within a Bacterial Community. (2018) (60)
Detecting T cell receptors involved in immune responses from single repertoire snapshots (2019) (53)
Method for identification of condition-associated public antigen receptor sequences (2017) (52)
Analytic methods for modeling stochastic regulatory networks. (2010) (51)
The Structure of Genealogies in the Presence of Purifying Selection: A Fitness-Class Coalescent (2010) (49)
Contribution of resident and circulating precursors to tumor-infiltrating CD8+ T cell populations in lung cancer (2021) (46)
Genesis of the αβ T-cell receptor (2018) (45)
Optimizing information flow in small genetic networks. III. A self-interacting gene. (2012) (44)
Exotic quantum phases and phase transitions in correlated matter (2005) (43)
Precision of Readout at the hunchback Gene: Analyzing Short Transcription Time Traces in Living Fly Embryos (2016) (40)
Transcriptional Memory in the Drosophila Embryo (2016) (38)
How many different clonotypes do immune repertoires contain? (2019) (37)
repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data (2015) (35)
Single molecule microscopy reveals key physical features of repair foci in living cells (2020) (35)
Constructing explicit magnetic analogies for the dynamics of glass forming liquids. (2008) (32)
Detecting T-cell receptors involved in immune responses from single repertoire snapshots (2018) (32)
Fierce Selection and Interference in B-Cell Repertoire Response to Chronic HIV-1 (2018) (32)
How a well-adapting immune system remembers (2018) (31)
Langevin dynamics of proteins at constant pH. (2002) (30)
Primary and secondary anti-viral response captured by the dynamics and phenotype of individual T cell clones (2020) (30)
Extinction and resurrection in gene networks (2008) (30)
3 minutes to precisely measure morphogen concentration (2018) (30)
Epistasis in a Fitness Landscape Defined by Antibody-Antigen Binding Free Energy. (2019) (29)
Combinatorial code governing cellular responses to complex stimuli (2015) (29)
New methods to image transcription in living fly embryos: the insights so far, and the prospects (2016) (28)
Disorder and the Neural Representation of Complex Odors (2017) (27)
Neoantigen quality predicts immunoediting in survivors of pancreatic cancer (2022) (27)
Precision in a rush: Trade-offs between reproducibility and steepness of the hunchback expression pattern (2018) (27)
Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T-cell memory formation after mild COVID-19 infection (2021) (26)
Deep generative selection models of T and B cell receptor repertoires with soNNia (2020) (26)
Quantitative Immunology for Physicists (2019) (26)
Noise Expands the Response Range of the Bacillus subtilis Competence Circuit (2015) (25)
Insights into immune system development and function from mouse T-cell repertoires (2017) (25)
Influence of decoys on the noise and dynamics of gene expression. (2012) (24)
Transitions in optimal adaptive strategies for populations in fluctuating environments. (2017) (23)
Capturing coevolutionary signals inrepeat proteins (2014) (22)
Population variability in the generation and selection of T-cell repertoires (2020) (21)
Information-optimal transcriptional response to oscillatory driving. (2010) (21)
Building General Langevin Models from Discrete Datasets (2019) (20)
RBM-MHC: A Semi-Supervised Machine-Learning Method for Sample-Specific Prediction of Antigen Presentation by HLA-I Alleles (2020) (18)
A mechanism for hunchback promoters to readout morphogenetic positional information in less than a minute (2020) (18)
IGoR: a tool for high-throughput immune repertoire analysis (2017) (18)
Population variability in the generation and thymic selection of T-cell repertoires (2020) (18)
Effect of phenotypic selection on stochastic gene expression. (2013) (18)
Inferring the immune response from repertoire sequencing (2019) (18)
Repeat proteins challenge the concept of structural domains. (2015) (18)
Exploiting B Cell Receptor Analyses to Inform on HIV-1 Vaccination Strategies (2020) (17)
Transition path sampling algorithm for discrete many-body systems. (2012) (17)
Physical epistatic landscape of antibody binding affinity (2017) (15)
Time-dependent information transmission in a model regulatory circuit. (2013) (15)
Learning the heterogeneous hypermutation landscape of immunoglobulins from high-throughput repertoire data (2020) (15)
Trade-Offs in Delayed Information Transmission in Biochemical Networks (2015) (14)
Antigenic waves of virus–immune coevolution (2021) (14)
Roadmap on biology in time varying environments (2021) (13)
The structure of allelic diversity in the presence of purifying selection. (2010) (13)
Rényi entropy, abundance distribution, and the equivalence of ensembles. (2016) (12)
Population dynamics of immune repertoires (2017) (12)
Size and structure of the sequence space of repeat proteins (2019) (12)
Immune fingerprinting through repertoire similarity (2020) (11)
Cost and benefits of clustered regularly interspaced short palindromic repeats spacer acquisition (2019) (11)
Origin of Public Memory B Cell Clones in Fish After Antiviral Vaccination (2018) (11)
Variable habitat conditions drive species covariation in the human microbiota (2017) (11)
Multi-Lineage Evolution in Viral Populations Driven by Host Immune Systems (2019) (10)
Active degradation of MarA controls coordination of its downstream targets (2018) (10)
Physical observables to determine the nature of membrane-less cellular sub-compartments (2021) (10)
Gene-gene cooperativity in small networks. (2008) (10)
Binding affinity landscapes constrain the evolution of broadly neutralizing anti-influenza antibodies (2021) (9)
Extending the dynamic range of transcription factor action by translational regulation. (2015) (8)
Affinity maturation for an optimal balance between long-term immune coverage and short-term resource constraints (2021) (8)
Benchmarking solutions to the T-cell receptor epitope prediction problem: IMMREP22 workshop report (2022) (7)
Repertoire sequencing and the statistical ensemble approach to adaptive immunity (2017) (7)
Physical constraints in biological collective behaviour (2018) (7)
Inferring repeat-protein energetics from evolutionary information (2017) (6)
Generative models of T-cell receptor sequences. (2020) (6)
Interference limits resolution of selection pressures from linked neutral diversity (2013) (6)
Evidence for Shaping of Light Chain Repertoire by Structural Selection (2018) (5)
Probing T-cell response by sequence-based probabilistic modeling (2020) (5)
Live Imaging of mRNA Transcription in Drosophila Embryos. (2018) (5)
LiveFly: A Toolbox for the Analysis of Transcription Dynamics in Live Drosophila Embryos. (2018) (5)
hunchback Promoters Can Readout Morphogenetic Positional Information in Less Than a Minute (2019) (5)
Optimal prediction with resource constraints using the information bottleneck (2020) (4)
On generative models of T-cell receptor sequences (2019) (4)
Flocking and Turning: a New Model for Self-organized Collective Motion (2014) (4)
What Can Immunologists Learn from Systems Approaches? (2018) (4)
Progress and open problems in evolutionary dynamics. (2018) (4)
From evolution to folding of repeat proteins (2022) (3)
Flexible machine learning prediction of antigen presentation for rare and common HLA-I alleles (2020) (3)
Learning the statistics and landscape of somatic mutation-induced insertions and deletions in antibodies (2021) (3)
SOS: online probability estimation and generation of T-and B-cell receptors (2020) (3)
Constraints and limitations on the transcriptional response downstream of the Bicoid morphogen gradient. (2020) (3)
Clonal competition in B-cell repertoires during chronic HIV-1 infection (2018) (3)
Dissipation in Non-Steady State Regulatory Circuits (2019) (3)
NoisET: Noise Learning and Expansion Detection of T-Cell Receptors. (2021) (3)
Precision of readout at the hunchback gene (2016) (2)
Evolution and folding of repeat proteins (2022) (2)
Inferring the T-cells repertoire dynamics of healthy individuals (2022) (2)
Comprehensive analysis of antiviral adaptive immunity formation and reactivation down to single-cell level (2019) (2)
A model for the integration of conflicting exogenous and endogenous signals by dendritic cells (2016) (2)
Synthetic reconstruction of the hunchback promoter specifies the role of Bicoid, Zelda and Hunchback in the dynamics of its transcription (2022) (2)
Signatures of irreversibility in microscopic models of flocking. (2022) (2)
Cooperation of multiple copies of noisy genes (2008) (2)
Probabilities of HIV-1 bNAb development in healthy and chronically infected individuals (2022) (1)
Modeling and predicting the overlap of B- and T-cell receptor repertoires in healthy and SARS-CoV-2 infected individuals (2021) (1)
Population based selection shapes the T cell receptor repertoire during thymic development (2022) (1)
Quantifying changes in the T cell receptor repertoire during thymic development (2023) (1)
Questioning the activity of active matter in natural flocks of birds (2015) (1)
Cost and benefits of CRISPR spacer acquisition (2018) (1)
Immune fingerprinting (2020) (1)
Learning the differences: a transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity (2022) (1)
Inspecting the interaction between human immunodeficiency virus and the immune system through genetic turnover (2023) (1)
Constraints and limitations on the transcriptional response downstream of the Bicoid morphogen gradient (2019) (1)
The Structure of Genealogies in the Presence of Purifying Selection: An Effective Coalescent Theory (2010) (1)
Habitat Fluctuations Drive Species Covariation in the Human Microbiota (2015) (1)
Combining mutation and recombination statistics to infer clonal families in antibody repertoires (2022) (1)
Precise tracking of vaccine-responding T-cell clones reveals convergent and personalized response in identical twins (2018) (1)
Many body theory of stochastic gene expression (2007) (0)
DRAG in situ barcoding reveals an increased number of HSPCs contributing to myelopoiesis with age (2022) (0)
High-throughput immune repertoire analysis with IGoR (2018) (0)
Author response: Primary and secondary anti-viral response captured by the dynamics and phenotype of individual T cell clones (2020) (0)
Questioning the activity of active matter: the case of bird flocks (2016) (0)
Optimal strategies for timekeeping in cells (2010) (0)
Live Imaging of Bicoid-Depe (2013) (0)
Capturing coevolutionary signals in repeat proteins Capturing coevolutionary signals in repeat proteins (2014) (0)
Design Principles of an Optimal Adaptive Immune System (2014) (0)
Signal transmission in a heterogeneous bacterial population (2018) (0)
Inspecting the interaction between HIV and the immune system through genetic turnover (2022) (0)
Antigenic waves of virus-immune co-evolution (2021) (0)
Response in Immune Repertoires (2021) (0)
Cost and Precision in Small Gene Regulatory Networks (2015) (0)
High-Throughput Ig Sequencing of Paired Blood and Spleen Samples Allows a Redefinition of Memory IgM Subsets in Humans (2014) (0)
Dynamical information synergy in biochemical signaling networks (2023) (0)
MINIMALIST: Mutual INformatIon Maximization for Amortized Likelihood Inference from Sampled Trajectories (2021) (0)
Effect of random environments on clone size distributions of the immune repertoire (2014) (0)
Method for identification of 1 condition-associated public antigen 2 receptor sequences (0)
Correction for Sethna et al., Insights into immune system development and function from mouse T-cell repertoires (2017) (0)
What are the current driving questions in immune repertoire research? (2022) (0)
Information processing in small gene regulatory networks and cascades (2010) (0)
Capturing coevolutionary signals inrepeat proteins (2015) (0)
Renormalization group approach to connect discrete- and continuous-time descriptions of Gaussian processes. (2021) (0)
Evolutionary stability of antigenically escaping viruses (2023) (0)
Telling time with an intrinsically noisy clock (2010) (0)
Active degradation of a regulator controls coordination of downstream genes (2018) (0)
Humansof IgM Memory Subsets in (2015) (0)
Fluctuating fitness shapes the clone size distribution of immune repertoires (2015) (0)
Modeling antigen presentation and immune recognition with Restricted Boltzmann Machines (2021) (0)
Statistical investigations into immune system diversity in mice and man (0)
Tiling solutions for optimal biological sensing (2015) (0)
Mouse T cell repertoires as statistical ensembles: overall characterization and age dependence (2016) (0)
Properties of gene expression including the non-functional binding of transcription factors to DNA (2012) (0)
Granger causality analysis for calcium transients in neuronal networks, challenges and improvements (2023) (0)
Affinity maturation for an optimal balance between long-term immune coverage and short-term resource constraints (2022) (0)
Organization of an optimal adaptive immune system (2017) (0)
Synthetic deconstruction of hunchback regulation by Bicoid (2021) (0)
The Connection between Discrete- and Continuous-Time Descriptions of Gaussian Continuous Processes (2021) (0)
Repertoire-based approach to identifying sequence motifs specific to an effective vaccine (2018) (0)
Towards a quantitative theory of tolerance (2023) (0)
Neoantigen quality predicts immunoediting in survivors of pancreatic cancer (2022) (0)
Author response: Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T-cell memory formation after mild COVID-19 infection (2020) (0)
Statistical Models of Adaptive Immune populations (2016) (0)
Noise Induced Biological Adaptation Differs between Analogous Differentiation Circuits (2011) (0)
Interdisciplinary approaches to predicting evolutionary biology (2023) (0)
Trade-Offs in Delayed Information Transmission in Biochemical Networks (2015) (0)
Electrical Signal Transmission in a Heterogeneous Population of Bacteria (2018) (0)
PE ] 8 N ov 2 01 8 Cost and benefits of CRISPR spacer acquisition (2018) (0)
Predicting the future from the past in visual object motion: optimal representations of mixed stochastic/deterministic trajectories (2020) (0)
Diversity of immune systems. (2017) (0)
[Evolutionary explanation of the diversity of immune strategies]. (2017) (0)
Constraints and limitations on decoding positional information: the Bicoid case-study (2019) (0)
Generalized Glauber dynamics for inference in biology (2022) (0)
Author response: A mechanism for hunchback promoters to readout morphogenetic positional information in less than a minute (2019) (0)
Flexible gene pools (2015) (0)
Contribution of resident and circulating precursors to tumor-infiltrating CD8+ T cell populations in non-small cell lung cancer patients (2020) (0)

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Aleksandra Walczak's Academic­Influence.com Rankings