Alessandra Carbone
#68,745
Most Influential Person Now
Italian mathematician and computer scientist
Alessandra Carbone's AcademicInfluence.com Rankings
Alessandra Carbonecomputer-science Degrees
Computer Science
#3126
World Rank
#3277
Historical Rank
Algorithms
#451
World Rank
#457
Historical Rank
Machine Learning
#5382
World Rank
#5452
Historical Rank
Alessandra Carbonemathematics Degrees
Mathematics
#5518
World Rank
#7754
Historical Rank
Graph Theory
#119
World Rank
#127
Historical Rank
Group Theory
#257
World Rank
#304
Historical Rank
Algebra
#571
World Rank
#753
Historical Rank
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Computer Science Mathematics
Why Is Alessandra Carbone Influential?
(Suggest an Edit or Addition)According to Wikipedia, Alessandra Carbone is an Italian mathematician and computer scientist. She is a professor in the computer science department of the Pierre and Marie Curie University. Since 2009 she has headed the laboratory of computational and quantitative biology. This laboratory studies the function and evolution of biological systems. She is a senior member of the Institut Universitaire de France and received the Irène Joliot-Curie Prize in 2010.
Alessandra Carbone's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Codon adaptation index as a measure of dominating codon bias (2003) (316)
- MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data (2010) (162)
- A global metagenomic map of urban microbiomes and antimicrobial resistance (2021) (102)
- Codon bias signatures, organization of microorganisms in codon space, and lifestyle. (2005) (97)
- SynChro: A Fast and Easy Tool to Reconstruct and Visualize Synteny Blocks along Eukaryotic Chromosomes (2014) (96)
- New Highly Divergent rRNA Sequence among Biodiverse Genotypes of Enterocytozoon bieneusi Strains Isolated from Humans in Gabon and Cameroon (2007) (87)
- Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean[OPEN] (2016) (86)
- Circuits and programmable self-assembling DNA structures (2002) (81)
- Joint Evolutionary Trees: A Large-Scale Method To Predict Protein Interfaces Based on Sequence Sampling (2009) (74)
- Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus (2016) (74)
- Codon Bias is a Major Factor Explaining Phage Evolution in Translationally Biased Hosts (2008) (73)
- Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment (2019) (71)
- NCIPLOT4: fast, robust and quantitative analysis of noncovalent interactions. (2020) (71)
- Pattern Formation In Biology, Vision And Dynamics (2000) (63)
- Identification of protein interaction partners and protein-protein interaction sites. (2008) (57)
- Large scale chromosomal mapping of human microRNA structural clusters (2013) (53)
- Protein-Protein Interactions in a Crowded Environment: An Analysis via Cross-Docking Simulations and Evolutionary Information (2013) (49)
- Mathematical slices of molecular biology (2001) (39)
- A multi-objective optimization approach accurately resolves protein domain architectures (2015) (38)
- Local Geometry and Evolutionary Conservation of Protein Surfaces Reveal the Multiple Recognition Patches in Protein-Protein Interactions (2015) (36)
- NCIPLOT and the analysis of noncovalent interactions using the reduced density gradient (2020) (35)
- BIS2Analyzer: a server for co-evolution analysis of conserved protein families (2017) (35)
- Chromosomal periodicity and positional networks of genes in Escherichia coli (2010) (34)
- A Graphic Apology for Symmetry and Implicitness (2000) (34)
- Improvement in Protein Domain Identification Is Reached by Breaking Consensus, with the Agreement of Many Profiles and Domain Co-occurrence (2016) (32)
- GEMME: A Simple and Fast Global Epistatic Model Predicting Mutational Effects (2019) (31)
- A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling (2018) (30)
- Meet-U: Educating through research immersion (2018) (28)
- Protein Fragments: Functional and Structural Roles of Their Coevolution Networks (2012) (27)
- Computational Prediction of Genomic Functional Cores Specific to Different Microbes (2006) (27)
- The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum (2014) (27)
- A Combinatorial Approach to Detect Coevolved Amino Acid Networks in Protein Families of Variable Divergence (2009) (27)
- Marine diatoms change their gene expression profile when exposed to microscale turbulence under nutrient replete conditions (2017) (26)
- Protein–protein interaction specificity is captured by contact preferences and interface composition (2017) (24)
- Coevolution analysis of Hepatitis C virus genome to identify the structural and functional dependency network of viral proteins (2016) (23)
- Duplication of Directed Graphs and Exponential Blow Up of Proofs (1999) (22)
- Making proofs without Modus Ponens: An introduction to the combinatorics and complexity of cut elimination (1996) (21)
- CLAG: an unsupervised non hierarchical clustering algorithm handling biological data (2012) (21)
- Molecular Tiling and DNA Self-assembly (2004) (21)
- A protein coevolution method uncovers critical features of the Hepatitis C Virus fusion mechanism (2018) (20)
- Coding and geometrical shapes in nanostructures: A fractal DNA-assembly (2003) (20)
- Phylogenetic Reconstruction Based on Synteny Block and Gene Adjacencies (2019) (20)
- Information Measure for Long-Range Correlated Sequences: the Case of the 24 Human Chromosomes (2013) (20)
- Dissecting protein architecture with communication blocks and communicating segment pairs (2016) (19)
- Local Interaction Signal Analysis Predicts Protein-Protein Binding Affinity. (2018) (19)
- Cycles of relatively prime length and the road coloring problem (2001) (18)
- Great interactions: How binding incorrect partners can teach us about protein recognition and function (2016) (17)
- Insights on the Evolution of Metabolic Networks of Unicellular Translationally Biased Organisms from Transcriptomic Data and Sequence Analysis (2005) (17)
- “Infostery” analysis of short molecular dynamics simulations identifies highly sensitive residues and predicts deleterious mutations (2018) (16)
- Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins (2007) (15)
- 3D Fractal DNA Assembly from Coding, Geometry and Protection (2004) (15)
- A route to fractal DNA-assembly (2002) (14)
- Protein social behavior makes a stronger signal for partner identification than surface geometry (2016) (14)
- Interpolants, Cut Elimination and Flow Graphs for the Propositional Calculus (1997) (14)
- Combinatorics of chromosomal rearrangements based on synteny blocks and synteny packs (2013) (14)
- The Craig Interpolation Theorem for Schematic Systems (1996) (13)
- A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models (2011) (12)
- JET2 Viewer: a database of predicted multiple, possibly overlapping, protein–protein interaction sites for PDB structures (2016) (12)
- Cycling in proofs and feasibility (1999) (12)
- Identification of Plasmodium falciparum nuclear proteins by mass spectrometry and proposed protein annotation (2018) (12)
- INTerface Builder: A Fast Protein-Protein Interface Reconstruction Tool. (2017) (11)
- Hidden partners: Using cross‐docking calculations to predict binding sites for proteins with multiple interactions (2018) (11)
- The cost of a cycle is a square (2002) (11)
- Asymptotic Cyclic Expansion and Bridge Groups of Formal Proofs (2001) (10)
- Co-evolution and information signals in biological sequences (2009) (10)
- Review: Samuel R. Buss, The Undecidability of $k$-Provability (1997) (10)
- Decrypting protein surfaces by combining evolution, geometry, and molecular docking (2019) (9)
- Some Combinatorics behind Proofs (1996) (9)
- Looking From The Inside And From The Outside (1996) (8)
- The complexity of protein interactions unravelled from structural disorder (2020) (8)
- A sense of life: computational and experimental investigations with models of biochemical and evolutionary processes. (2003) (8)
- Much shorter proofs: A bimodal investigation (1990) (8)
- NCIPLOT4: A New Step Towards a Fast Quantification of Noncovalent Interactions (2019) (7)
- Inconsistent Distances in Substitution Matrices can be Avoided by Properly Handling Hydrophobic Residues (2008) (7)
- Streams and strings in formal proofs (2002) (7)
- A Sense of Life ∗ (2003) (7)
- A new mapping between combinatorial proofs and sequent calculus proofs read out from logical flow graphs (2010) (7)
- Functional labels and syntactic entropy on DNA strings and proteins (2003) (6)
- Decrypting protein surfaces by combining evolution, geometry and molecular docking (2018) (6)
- Folding and Self-Assembly of Biological Macromolecules (2004) (6)
- Rosser Orderings in Bimodal Logics (1989) (6)
- Plasmobase: a comparative database of predicted domain architectures for Plasmodium genomes (2017) (5)
- Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis (2020) (5)
- Turning Cycles into Spirals (1999) (5)
- From complete cross-docking to partners identification and binding sites predictions (2021) (5)
- A fusion peptide in preS1 and the human protein disulfide isomerase ERp57 are involved in hepatitis B virus membrane fusion process (2021) (5)
- Group Cancellation and Resolution (2006) (5)
- Deep Local Analysis evaluates protein docking conformations with locally oriented cubes (2022) (4)
- Logical structures and genus of proofs (2009) (4)
- DNA Computing, 11th International Workshop on DNA Computing, DNA11, London, ON, Canada, June 6-9, 2005. Revised Selected Papers (2006) (4)
- JET2 Viewer: a database of predicted multiple, possibly overlapping, protein–protein interaction sites for PDB structures (2016) (3)
- SPoRE: a mathematical model to predict double strand breaks and axis protein sites in meiosis (2014) (3)
- Information Content of Sets of Biological Sequences Revisited (2009) (3)
- Coevolution analysis of amino-acids reveals diversified drug-resistance solutions in viral sequences: a case study of hepatitis B virus (2020) (3)
- Modelling macromolecular networks: two meetings in Paris, July, 2002. (2002) (2)
- Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (2021) (2)
- COVTree: Coevolution in OVerlapped sequences by Tree analysis server (2020) (2)
- Hidden partners: Using cross-docking calculations to predict binding sites for proteins with multiple interactions (2018) (2)
- Crystal structure of chloroplast fructose-1,6-bisphosphate aldolase from the green alga Chlamydomonas reinhardtii. (2022) (2)
- Provable Fixed Points in I Δ0 + Ω1 (1991) (2)
- Revisiting the codon adaptation index from a whole-genome perspective: gene expression, codon bias, and metabolic networks in the context of genomes comparison (2005) (2)
- iBIS2Analyzer: a web server for a phylogeny-driven coevolution analysis of protein families (2022) (2)
- Predicted human structural clusters of miRNAs target cancer genes (2014) (2)
- Quantified Propositional Logic and the Number of Lines of Tree-Like Proofs (2000) (2)
- Deep Local Analysis estimates effects of mutations on protein-protein interactions (2022) (1)
- Provable fixed points in ${\rm I}\Delta_0+\Omega_1$. (1991) (1)
- Extracting Coevolving Characters from a Tree of Species (2014) (1)
- Identification of Protein Interaction Partners from Shape Complementarity Molecular Cross-Docking (2013) (1)
- CLAG: an unsupervised non hierarchical clustering algorithm handling biological data (2012) (1)
- Pathways of deduction (2003) (1)
- MyCLADE: a multi-source domain annotation server for sequence functional exploration (2021) (1)
- Multiple Profile Models Extract Features from Protein Sequence Data and Resolve Functional Diversity of Very Different Protein Families (2022) (1)
- ProfileView: multiple probabilistic models resolve protein families functional diversity (2019) (1)
- Opera 2.0: Crowdsourcing the Stage (2012) (1)
- Targeted domain assembly for fast functional profiling of metagenomic datasets with S3A (2020) (1)
- Multiple probabilistic models extract features from protein sequence data and resolve functional diversity of very different protein families (2019) (1)
- A layer cake model for plant and metazoan chromatin (2023) (0)
- A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling (2018) (0)
- Environmental and Physiological Insights from Microbial Genome Sequences (2008) (0)
- Disorder and interfaces in proteins are two sides of the same coin (2019) (0)
- Macromolecular Interplay and Traffic on DNA: Workshop, Evry, July 2002 (2003) (0)
- Marine diatoms change their gene expression profile when exposed to microscale turbulence under nutrient replete conditions (2017) (0)
- Provable Fixed Points.Much Shorter Proofs.Rosser Orderings in Bimodal Logics.Much Shorter Proofs: A Bimodal Investigation (1993) (0)
- From pseudo-random numbers to stochastic growth models and texture images (1999) (0)
- A Question of Time (2008) (0)
- Preface (2003) (0)
- Adaptation studied with the self-consistent codon index: genomic spaces, metabolic network comparison, minimal gene sets and viral classification (2007) (0)
- Tumoroscope: a probabilistic model for mapping cancer clones in tumor tissues (2022) (0)
- Deep Local Analysis deconstructs protein - protein interfaces and accurately estimates binding affinity changes upon mutation (2022) (0)
- Dissecting protein architecture with communication blocks and communicating segment pairs (2016) (0)
- Author response: A fusion peptide in preS1 and the human protein disulfide isomerase ERp57 are involved in hepatitis B virus membrane fusion process (2021) (0)
- “Infostery” analysis of short molecular dynamics simulations identifies highly sensitive residues and predicts deleterious mutations (2018) (0)
- SPoRE: a mathematical model to predict double strand breaks and axis protein sites in meiosis (2014) (0)
- Functional labels andsyntactic entropy on DNA strings andproteins (2003) (0)
- LEVELNET: diving into the multiple layers of protein-protein physical interaction networks (2021) (0)
- Combining machine learning and evolution for the annotation of metagenomics data (2019) (0)
- How binding incorrect partners can lead to the prediction of correct interfaces: Results from a massive cross-docking study on proteins (2015) (0)
- Crystal structure of chloroplast fructose-1,6-bisphosphate aldolase from the green alga Chlamydomonas reinhardtii (2021) (0)
- The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum (2014) (0)
- Provable Fixed Points in /Δ o + Ωi (2003) (0)
- The kiwi market: trends and perspective. (2009) (0)
- Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (2022) (0)
- 2008 Reviewers List (2009) (0)
- Atlas of Genetics and Cytogenetics in Oncology and Haematology (2014) (0)
- META-CASH : a tool to identify domains and functional annotation of metatranscriptomic sequences (2014) (0)
- Great Interactions: Binding Incorrect Partners to Learn about Protein Recognition and Function (2017) (0)
- Plasmobase: a comparative database of predicted domain architectures for Plasmodium genomes (2017) (0)
- Conservation, Co‐evolution and Dynamics: From Sequence to Function (2018) (0)
- Proceedings of the 11th international conference on DNA Computing (2005) (0)
- Predicting substitutions to modulate disorder and stability in coiled-coils (2020) (0)
- 14th workshop on logic, language, information and computation (wollic 2007) (2008) (0)
- Soft disorder modulates the assembly path of protein complexes (2022) (0)
- Author index to Volume 13 (2003) (0)
- Threatening an Utopian world: the post-romantic aesthetics of the “melusine” in Zamyatin’s “We” (2019) (0)
- A protein coevolution method designed for conserved sequences uncovers critical features of the original HCV fusion mechanism and provides molecular basis for the design of effective antiviral strategies (2018) (0)
- DLA-Ranker: Evaluating protein docking conformations with many locally oriented cubes (2021) (0)
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What Schools Are Affiliated With Alessandra Carbone?
Alessandra Carbone is affiliated with the following schools:
