Ami Bhatt
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Ami Bhatt's Degrees
- Bachelors Biology Stanford University
- PhD Biomedical Informatics Stanford University
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Why Is Ami Bhatt Influential?
(Suggest an Edit or Addition)According to Wikipedia, Ami Bhatt is an American physician-scientist who studies the link between blood cancers and the human gut microbiome. She holds associate professorships in Genetics and Medicine at Stanford University. She is a member of Stanford Bio-X, the Stanford Cancer Institute, Stanford Maternal & Child Health Research Institute , and Stanford ChEM-H. In addition, Bhatt is the co-founder of Global Oncology Inc., a nonprofit focused on providing quality oncologic treatment in resource-constrained settings.
Ami Bhatt's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Comprehensive molecular characterization of urothelial bladder carcinoma (2014) (1748)
- Increased GVHD-related mortality with broad-spectrum antibiotic use after allogeneic hematopoietic stem cell transplantation in human patients and mice (2016) (365)
- Complementary genomic approaches highlight the PI3K/mTOR pathway as a common vulnerability in osteosarcoma (2014) (335)
- A Gut Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection. (2018) (261)
- Complete, closed bacterial genomes from microbiomes using nanopore sequencing (2020) (184)
- Hepatocyte growth factor is a preferred in vitro substrate for human hepsin, a membrane-anchored serine protease implicated in prostate and ovarian cancers. (2005) (168)
- Transient Osmotic Perturbation Causes Long-Term Alteration to the Gut Microbiota (2018) (135)
- Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome. (2013) (133)
- Adhesion signaling by a novel mitotic substrate of src kinases (2005) (131)
- Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes (2018) (129)
- Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome (2021) (125)
- Precision Identification of Diverse Bloodstream Pathogens in the Gut Microbiome (2018) (115)
- Coordinate expression and functional profiling identify an extracellular proteolytic signaling pathway (2007) (96)
- Gastrointestinal symptoms and fecal shedding of SARS-CoV-2 RNA suggest prolonged gastrointestinal infection (2022) (92)
- High-quality genome sequences of uncultured microbes by assembly of read clouds (2018) (90)
- Reporting guidelines for human microbiome research: the STORMS checklist (2021) (82)
- Peginterferon Lambda-1a for treatment of outpatients with uncomplicated COVID-19: a randomized placebo-controlled trial (2020) (80)
- A Bioinformatic Analysis of Integrative Mobile Genetic Elements Highlights Their Role in Bacterial Adaptation. (2019) (79)
- The Burden of Cancer in Asian Americans: A Report of National Mortality Trends by Asian Ethnicity (2016) (75)
- The Microbiome and Hematopoietic Cell Transplantation: Past, Present, and Future. (2018) (73)
- Infection Rates among Acute Leukemia Patients Receiving Alternative Donor Hematopoietic Cell Transplantation. (2016) (64)
- The human microbiome in hematopoiesis and hematologic disorders. (2015) (63)
- Household triclosan and triclocarban effects on the infant and maternal microbiome (2017) (60)
- Microbiota Manipulation With Prebiotics and Probiotics in Patients Undergoing Stem Cell Transplantation (2016) (50)
- Complete hematologic response of early T-cell progenitor acute lymphoblastic leukemia to the γ-secretase inhibitor BMS-906024: genetic and epigenetic findings in an outlier case (2015) (48)
- Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients (2017) (48)
- Brief Report: In Search of a Candidate Pathogen for Giant Cell Arteritis: Sequencing‐Based Characterization of the Giant Cell Arteritis Microbiome (2014) (46)
- Antibiotic-mediated modification of the intestinal microbiome in allogeneic hematopoietic stem cell transplantation (2017) (46)
- Diversity of resistance mechanisms in carbapenem-resistant Enterobacteriaceae at a health care system in Northern California, from 2013 to 2016. (2019) (45)
- Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages (2018) (43)
- MT-SP1 proteolysis and regulation of cell-microenvironment interactions. (2008) (40)
- Surveying Gut Microbiome Research in Africans: Toward Improved Diversity and Representation. (2019) (38)
- Improved high-molecular-weight DNA extraction, nanopore sequencing and metagenomic assembly from the human gut microbiome (2020) (38)
- Institutionalizing healthcare hackathons to promote diversity in collaboration in medicine (2018) (35)
- Glucagon like peptide-2 for Intestinal stem cell and Paneth cell repair during graft-versus-host disease in mice and humans. (2020) (34)
- Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale (2018) (32)
- DNA copy number analysis of metastatic urothelial carcinoma with comparison to primary tumors (2015) (23)
- Ask, Don't Tell — Mobile Phones to Improve HIV Care (2013) (22)
- Metagenomic Characterization of Microbial Communities In Situ Within the Deeper Layers of the Ileum in Crohn’s Disease (2016) (22)
- MetaRibo-Seq measures translation in microbiomes (2020) (20)
- Standardized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA (2021) (17)
- Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome (2022) (16)
- The gut microbiome: a missing link in understanding the gastrointestinal manifestations of COVID-19? (2021) (16)
- Antibiotic practice patterns in hematopoietic cell transplantation: A survey of blood and marrow transplant clinical trials network centers (2018) (15)
- Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults (2021) (14)
- De novo assembly of microbial genomes from human gut metagenomes using barcoded short read sequences (2017) (14)
- Whole blood RNA sequencing reveals a unique transcriptomic profile in patients with ARDS following hematopoietic stem cell transplantation (2019) (14)
- Post-Transplant Cyclophosphamide, Tacrolimus, and Mycophenolate Mofetil As the New Standard for Graft-Versus-Host Disease (GVHD) Prophylaxis in Reduced Intensity Conditioning: Results from Phase III BMT CTN 1703 (2022) (13)
- Automated Prediction and Annotation of Small Open Reading Frames in Microbial Genomes. (2020) (13)
- Short- and long-read metagenomics of urban and rural South African gut microbiomes reveal a transitional composition and undescribed taxa (2022) (13)
- Epidemiologic Investigation of a Cluster of Neuroinvasive Bacillus cereus Infections in 5 Patients With Acute Myelogenous Leukemia (2015) (13)
- A fructo-oligosaccharide prebiotic is well-tolerated in adults undergoing allogeneic hematopoietic stem cell transplantation: a phase I dose-escalation trial (2021) (10)
- Bradyrhizobium enterica in cord colitis syndrome. (2013) (10)
- A121: In Search of Infectious Triggers of Periodic Fever, Aphthous Stomatitis, Pharyngitis and Adenitis Syndrome (2014) (10)
- Generating closed bacterial genomes from long-read nanopore sequencing of microbiomes (2018) (9)
- Evaluating Barriers and Opportunities in Delivering High-Quality Oncology Care in a Resource-Limited Setting Using a Comprehensive Needs Assessment Tool (2018) (9)
- Structured RNA Contaminants in Bacterial Ribo-Seq (2020) (9)
- Transmission and persistence of crAssphage, a ubiquitous human-associated bacteriophage (2018) (9)
- Quantitative computed tomography assessment of bronchiolitis obliterans syndrome after lung transplantation (2017) (9)
- Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly (2019) (8)
- Reasons why patients fail screening in Indian breast cancer trials (2015) (8)
- Persistence of endothelial thrombomodulin in a patient with infectious purpura fulminans treated with protein C concentrate. (2018) (8)
- With Probiotics, Resistance Is Not Always Futile. (2018) (8)
- Identification of covalent inhibitors that disrupt M. tuberculosis growth by targeting multiple serine hydrolases involved in lipid metabolism. (2021) (7)
- Bugs as Drugs: Therapeutic Microbes for the Prevention and Treatment of Disease (2019) (7)
- Culture-free generation of microbial genomes from human and marine microbiomes (2018) (7)
- NK-cell and B-cell deficiency with a thymic mass. (2011) (7)
- Household triclosan and triclocarban exposure impacts the adult intestinal microbiome but not the infant intestinal microbiome (2017) (6)
- Diverse Mechanisms of Resistance in Carbapenem-Resistant Enterobacteriaceae at a Health Care System in Silicon Valley, California (2018) (6)
- Standardized and optimized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA (2021) (6)
- A compilation of fecal microbiome shotgun metagenomics from hematopoietic cell transplantation patients (2022) (6)
- SARS-CoV-2 RNA and N Antigen Quantification via Wastewater at the Campus Level, Building Cluster Level, and Individual-Building Level (2022) (5)
- Microbiota dynamics in a randomized trial of gut decontamination during allogeneic hematopoietic cell transplantation (2022) (5)
- From genome structure to function: insights into structural variation in microbiology. (2022) (5)
- Invariant natural killer T-cell subsets have diverse graft-versus-host-disease – preventing and antitumor effects (2021) (5)
- Mobile genetic element insertions drive antibiotic resistance across pathogens (2019) (5)
- Large-scale discovery of recombinases for integrating DNA into the human genome (2021) (4)
- Invariant Natural Killer T Cell Subsets Have Diverse Graft-Versus-Host-Disease-Preventing and Anti-Tumor Effects. (2021) (4)
- Effective Collaborative Communication in Hospice Care (2015) (4)
- Simultaneous ribosome profiling of hundreds of microbes from the human microbiome (2021) (4)
- Allied Commensal Forces against Vancomycin-Resistant Enterococci. (2017) (4)
- Thousands of small, novel genes predicted in global phage genomes. (2022) (4)
- Hematologic Manifestations of SLE (2012) (4)
- Global Design Strategy for Cancer Patient Education Materials: Haiti Pilot Case Study (2016) (4)
- A combined RNA-Seq and comparative genomics approach identifies 1,085 candidate structured RNAs expressed in human microbiomes (2020) (4)
- Recommendations from the ASCO Academic Global Oncology Task Force (2020) (4)
- Microbiome genome structure drives function (2019) (4)
- Assessing and Addressing the Need for Cancer Patient Education in a Resource-Limited Setting in Haiti. (2020) (4)
- Author Correction: Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages (2020) (3)
- Microbes and microbiomes in 2020 and beyond (2020) (3)
- Digesting New Developments in Biosensors (2018) (3)
- Data mining of digitized health records in a resource-constrained setting reveals that timely immunophenotyping is associated with improved breast cancer outcomes (2018) (3)
- Schistosomiasis and Bladder Cancer in Egypt: A Historical Analysis (2016) (3)
- Nursing education during a pandemic: Perspectives of students and faculty (2020) (2)
- Comparative genomics identifies thousands of candidate structured RNAs in human microbiomes (2021) (2)
- Human β-defensin 2 ameliorates acute GVHD by limiting ileal neutrophil infiltration and restraining T cell receptor signaling (2022) (2)
- A Bioinformatic Analysis of Integrative Mobile Genetic Elements Highlights Their Role in Bacterial Adaptation. (2020) (2)
- Short- and long-read metagenomics of South African gut microbiomes reveal a transitional composition and novel taxa (2020) (2)
- Metagenome-wide measurement of protein synthesis in the human fecal microbiota using MetaRibo-Seq (2018) (2)
- Pulmonary Clinicopathological Correlation In Long Term Survivors Following Allogeneic Hematopoietic Stem Cell Transplantation: An Autopsy Series (2013) (2)
- Disease Control After Hypofractionation Versus Conventional Fractionation for Triple Negative Breast Cancer: Comparative Effectiveness in a Large Observational Cohort. (2021) (2)
- A Global Cancer Project Map Integrating Global Cancer Statistics to Guide International Efforts (2016) (2)
- Automated prediction and annotation of small proteins in microbial genomes (2020) (1)
- A screen of covalent inhibitors in Mycobacterium tuberculosis identifies serine hydrolases involved in lipid metabolism as potential therapeutic targets (2021) (1)
- Developing and Evaluating Culturally and Literacy Appropriate Cancer Patient Education Materials for Haiti (2016) (1)
- A Phase I Study of the Prebiotic Fructooligosaccharide in Allogeneic HCT and Evaluation of the Impact of This Compound on the Intestinal Microbiome (2018) (1)
- Precision identification of diverse bloodstream pathogens in the gut microbiome (2018) (1)
- Crystal structure of the extracellular region of the transmembrane serine protease hepsin with covalently bound preferred substrate. (2005) (1)
- Abstract 4149: Transcriptomic and pathogen analysis in bladder cancer primary tumor and metastasis pairs. (2013) (1)
- Technological solutions for global hematology and oncology. (2017) (1)
- Comparative genomics of Enterobacter cloacae complex before and after acquired clinical resistance to Ceftazidime-Avibactam. (2021) (1)
- A compilation of fecal microbiome shotgun metagenomics from hematopoietic cell transplantation patients (2022) (1)
- A compilation of fecal microbiome shotgun metagenomics from hospitalized patients undergoing hematopoietic cell transplantation (2021) (1)
- Repurposing Ribo-Seq to provide insights into structured RNAs (2020) (1)
- Antibiotics in Hematopoietic Cell Transplantation: Adversaries or Allies? (2016) (1)
- Fecal Microbiota Transplant Is a Potentially Safe and Effective Treatment for Clostridium Difficile Infection in Hematopoietic Stem Cell Recipients (2016) (1)
- Longitudinal Changes in the Intestinal Microbiome Composition Following Gut Decontamination in Pediatric Allogeneic Hematopoietic Stem Cell Transplant Patients: A Pilot Study (2019) (1)
- Metabolic diversity in commensal protists regulates intestinal immunity and trans-kingdom competition (2022) (1)
- Distinct Immune Regulatory Potential of Invariant Natural Killer T (iNKT) Cell Subsets: iNKT2 and iNKT17, but Not iNKT1, Protect from Graft-Versus-Host-Disease (2019) (1)
- Read cloud sequencing elucidates microbiome dynamics in a hematopoietic cell transplant patient (2018) (1)
- Launching an Interactive Cancer Projects Map: A Collaborative Approach to Global Cancer Research and Program Development (2015) (1)
- Publisher Correction: Standardized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA (2021) (1)
- MI-Immune/1801: Lessons from an Ongoing, Multi-Center Trial Involving Biospecimen Collection for Prospective Microbiome and Immune Profiling in Patients Undergoing Reduced Intensity Conditioning Allogeneic HCT (2021) (0)
- Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults (2022) (0)
- Next-Generation Sequencing for the Identification of Transplantation-Associated Pathogens (2012) (0)
- Program leadership council: Collaborative, peer-to-peer learning to strengthen global health residency education (2015) (0)
- Enhancing a Workforce: A Review of State‐Level Processes for Advancing Community Health Worker Development (2021) (0)
- Abstract IA006: Measuring the microbiome: Improving the predictive power of microbiome analysis in cancer outcomes (2023) (0)
- TRTH Symposium: A Decade of Training the Future Leaders in Translational Research (2019) (0)
- Breast cancer characteristics and time to chemotherapy initiation in Belize. (2022) (0)
- Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale (2020) (0)
- Making the microbiome personal (2019) (0)
- Cancer Demographics and Time-to-Care in Belize. (2023) (0)
- Students for global oncology: Building a movement for student education and engagement in an emerging field (2015) (0)
- Phanta: Phage-inclusive profiling of human gut metagenomes (2022) (0)
- US and UK investments in global oncology research: A systematic analysis (2015) (0)
- THE SUCCESSFUL IMPLEMENTATION OF A VIRTUAL VISIT PROGRAM FOR ADULTS WITH CONGENITAL HEART DISEASE (2020) (0)
- Abstract B21: The gastrointestinal microbiota controls cancer cell intrinsic mechanisms to promote the progression of acute lymphoblastic leukemia (2020) (0)
- Microbes prevent HSPCs from "NOD"-ing off. (2017) (0)
- A Screen of Covalent Inhibitors In Mycobacterium Tuberculosis Identifies Serine Hydrolases Involved in Lipid Metabolism as Potential Therapeutic Targets (2021) (0)
- Achieving quantitative and accurate measurement of the human gut microbiome (2022) (0)
- Intragenic DNA inversions expand bacterial coding capacity (2023) (0)
- Improved high-molecular-weight DNA extraction, nanopore sequencing and metagenomic assembly from the human gut microbiome (2020) (0)
- Quantifying bias introduced by sample collection in relative and absolute microbiome measurements. (2023) (0)
- Chemoproteomic identification of a dipeptidyl peptidase 4 (DPP4) homolog in Bacteroides thetaiotaomicron important for envelope integrity and fitness (2022) (0)
- Microbiome genome structure drives function (2019) (0)
- HIGH RESOURCE USE AMONG ADULT CONGENITAL HEART SURGERY ADMISSIONS IN ADULT HOSPITALS: RISK FACTORS AND ASSOCIATION WITH DEATH AND COMPLICATIONS (2013) (0)
- Resource Large-Scale Analyses of HumanMicrobiomes Reveal Thousands of Small , Novel Genes Graphical (2019) (0)
- Comparative genomics identifies thousands of candidate structured RNAs in human microbiomes (2021) (0)
- Impact of Gut Decontamination on the Microbiome and Risk of Bloodstream Infections during Pediatric Allogeneic Hematopoietic Stem Cell Transplantation (2022) (0)
- Stool Screening for Sars-Cov-2 RNA for COVID-19 in Patients Undergoing Hematopoietic Cell Transplantation, Cellular Therapy, and Induction Chemotherapy (2023) (0)
- P2. In search of a candidate pathogen for GCA: sequencing based characterization of the GCA microbiome (2014) (0)
- Chromatin accessibility changes induced by the microbial metabolite butyrate reveal possible mechanisms of anti-cancer effects (2021) (0)
- Palliative care education in Belarus: Development and delivery of a cost-efficient, streamlined and targeted palliative care curriculum (2015) (0)
- AGBT meeting report (2018) (0)
- DNA copy number analysis of metastatic urothelial carcinoma with comparison to primary tumors (2015) (0)
- Strain-level Determination of the Contribution of Gut Microbiota to the Development of Bacteremia in Patients Undergoing Stem Cell Transplantation (2017) (0)
- The Prostate 62 : 1 ^ 13 ( 2005 ) Substrates of the Prostate-Specific Serine Protease Prostase / KLK 4 Definedby Positional-Scanning Peptide Libraries (2004) (0)
- Complete, closed bacterial genomes from microbiomes using nanopore sequencing (2020) (0)
- Creating future leaders: An interprofessional experiential training in advocacy and global health at the world health assembly (2015) (0)
- Tomato brown rugose fruit virus Mo gene is a novel microbial source tracking marker (2023) (0)
- Diverse Bloodstream Pathogens Are Identified in the Gut Microbiome Prior to Infection in Hematopoietic Stem Cell Transplantation Recipients (2018) (0)
- Author Correction: Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages (2020) (0)
- Bacillus Cereus: A Leukemia-Specific, Neuroinvasive Pathogen? (2014) (0)
- Antimicrobial exposure is associated with decreased survival in triple-negative breast cancer (2023) (0)
- Ramucirumab in Indian Patients with Advanced Gastric Cancer — Does Borderline Performance Status and Heavy Burden of Disease in Real World Practice Impact Clinical Bene fi t? Gastrointestinal Cancer (2022) (0)
- Abstract PD4-07: Contemporary practice patterns for the use of regional nodal irradiation during post-lumpectomy radiotherapy for patients with N0/N1 breast cancer (2021) (0)
- Data mining of digitized health records in a resource-constrained setting reveals that timely immunophenotyping is associated with improved breast cancer outcomes (2018) (0)
- Abstract P3-12-34: Antibiotic use and mortality from triple-negative breast cancer (2022) (0)
- Making the microbiome personal (2019) (0)
- A paradigm shift in global outreach: the collaborative Cancer Project Map as a platform for government and non-government international efforts (2016) (0)
- Microbiome of the Lung in Patient with Idiopathic Pneumonia Syndrome (IPS) after HCT (2017) (0)
- MetaRibo-Seq measures translation in microbiomes (2020) (0)
- LAPAROSCOPIC SURGERY REQUIRING ABDOMINAL INSUFFLATION IN PATIENTS WITH CONGENITAL HEART DISEASE (2021) (0)
- Implementing Patient-Directed Cancer Education Materials Across Nigeria (2021) (0)
- Near-fatal Legionella pneumonia in a neonate linked to home humidifier by metagenomic next generation sequencing. (2022) (0)
- AGBT meeting report (2018) (0)
- Clinical Impact of a Global Pathology Outreach Program to Low- and Middle-Income Countries (2017) (0)
- Abstracts from the Society for Pediatric Pathology Spring 2017 Meeting , March 3 rd – 5 th , San Antonio , Texas 1 . Clinical Impact of a Global Pediatric Pathology Outreach Program to Low-and Middle-Income Countries ( LMIC ) (2017) (0)
- The TaxUMAP atlas: efficient display of large clinical microbiome data reveals ecological competition involved in protection against bacteremia (2022) (0)
- Equitable partnerships and the path to inclusive, innovative and impactful human microbiome research (2022) (0)
- Sequence-Based Discovery of Novel Bacteria, Bradyrhizobium Enterica, in Cord Colitis Syndrome (2013) (0)
- Using Coordinate Expression and Functional Profiling to Identify an Extracellular Proteolytic Signaling Pathway (2007) (0)
- SOCIOECONOMIC PREDICTORS OF TELEMEDICINE ACCESS AMONG PATIENTS RECEIVING AMBULATORY CARDIOVASCULAR CARE DURING THE COVID-19 PANDEMIC (2021) (0)
- DETERMINANTS OF TELEMEDICINE UTILIZATION IN AMBULATORY CARDIOVASCULAR CARE DURING THE COVID-19 PANDEMIC (2021) (0)
- Institutionalizing healthcare hackathons to promote diversity in collaboration in medicine (2018) (0)
- Creating and implementing low literacy cancer education materials: bridging the gap in sub-Saharan Africa (2015) (0)
- Volume 21 Acknowledgments (2016) (0)
- Making Progress in Graft-Versus-Host Disease Prophylaxis and Microbiome Analysis in the Blood and Marrow Transplant Clinical Trials Network: Progress III (1703)/MI-Immune (1801) (2019) (0)
- Invariant Natural Killer T Cell Subsets Have Diverse Functions: iNKT2 and iNKT17 Protect from Graft-Versus-Host-Disease, Whereas iNKT1 Have Antitumor Potential (2018) (0)
- Mapping global cancer research and control in areas of low and middle income: The need for shared data on a single, interactive platform. (2016) (0)
- Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages (2020) (0)
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Ami Bhatt is affiliated with the following schools:
