Amos Bairoch | Academic Influence

Amos Bairoch's AcademicInfluence.com Rankings

Amos Bairoch

Biology

#1449

World Rank

#2431

Historical Rank

Bioinformatics

#16

World Rank

#16

Historical Rank

biology Degrees

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Biology

Amos Bairoch's Degrees

PhD Biochemistry University of Geneva
Masters Biochemistry University of Geneva

Why Is Amos Bairoch Influential?

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According to Wikipedia, Amos Bairoch is a Swiss bioinformatician and Professor of Bioinformatics at the Department of Human Protein Sciences of the University of Geneva where he leads the CALIPHO group at the Swiss Institute of Bioinformatics combining bioinformatics, curation, and experimental efforts to functionally characterize human proteins.

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Amos Bairoch's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Protein identification and analysis tools in the ExPASy server. (1999) (8476)
UniProt: the Universal Protein knowledgebase (2004) (7175)
ExPASy: the proteomics server for in-depth protein knowledge and analysis (2003) (4272)
The Universal Protein Resource (UniProt) (2004) (3958)
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 (2003) (3438)
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 (2000) (2537)
The SWISS-PROT protein sequence data bank and its supplement TrEMBL (1997) (2026)
New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. (1993) (1963)
InterPro: the integrative protein signature database (2008) (1850)
The PROSITE database, its status in 1997 (1997) (1570)
The PROSITE database, its status in 2002 (2002) (1525)
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins (2006) (1403)
Updating the sequence-based classification of glycosyl hydrolases. (1996) (1329)
The PROSITE database, its status in 1999 (1999) (1157)
The Universal Protein Resource (UniProt): an expanding universe of protein information (2005) (1115)
The UDP glycosyltransferase gene superfamily: recommended nomenclature update based on evolutionary divergence. (1997) (1089)
The InterPro database, an integrated documentation resource for protein families, domains and functional sites (2001) (1061)
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999 (1999) (1023)
The ENZYME database in 2000 (2000) (980)
The PROSITE database (2005) (973)
IntAct: an open source molecular interaction database (2004) (967)
PROSITE: a dictionary of sites and patterns in proteins. (1991) (955)
PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors (2002) (927)
PROSITE, a protein domain database for functional characterization and annotation (2009) (833)
The Universal Protein Resource (UniProt) in 2010 (2010) (830)
Arac/XylS family of transcriptional regulators (1997) (815)
A large-scale evaluation of computational protein function prediction (2013) (784)
Molecular basis of symbiosis between Rhizobium and legumes (1997) (775)
The InterPro Database, 2003 brings increased coverage and new features (2003) (742)
Ongoing and future developments at the Universal Protein Resource (2010) (660)
The SWISS-PROT protein sequence data bank. (1991) (587)
InterPro, progress and status in 2005 (2004) (573)
In The Proteomics Protocols Handbook (2005) (572)
A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server. (1994) (561)
UniProtKB/Swiss-Prot. (2007) (550)
New developments in the InterPro database (2007) (542)
The 20 years of PROSITE (2007) (522)
Infrastructure for the life sciences: design and implementation of the UniProt website (2009) (520)
The SWISS-PROT protein sequence data bank and its new supplement TREMBL (1996) (470)
Recent improvements to the PROSITE database (2004) (467)
Mass spectrometry in high-throughput proteomics: ready for the big time (2010) (456)
ScanProsite: a reference implementation of a PROSITE scanning tool. (2002) (454)
The Gene Ontology in 2010: extensions and refinements (2009) (449)
Interleukin-1-inducible genes in endothelial cells. Cloning of a new gene related to C-reactive protein and serum amyloid P component. (1992) (423)
A unique signature identifies a family of zinc‐dependent metallopeptidases (1989) (415)
Swiss-Prot: Juggling between evolution and stability (2004) (384)
InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites (2002) (376)
The Universal Protein Resource (UniProt) (2006) (369)
The PROSITE dictionary of sites and patterns in proteins, its current status (1993) (345)
CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens (2008) (338)
The Cellosaurus, a Cell-Line Knowledge Resource. (2018) (333)
The Human Proteome Project: Current State and Future Direction (2011) (328)
Detailed peptide characterization using PEPTIDEMASS – a World‐Wide‐Web‐accessible tool (1997) (324)
ViralZone: a knowledge resource to understand virus diversity (2010) (314)
The PROSITE database, its status in 1995 (1996) (302)
The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome (2012) (281)
High-quality Protein Knowledge Resource: SWISS-PROT and TrEMBL (2002) (269)
High-throughput mass spectrometric discovery of protein post-translational modifications. (1999) (258)
The Sulfinator: predicting tyrosine sulfation sites in protein sequences (2002) (254)
The SWISS-PROT protein sequence data bank: current status. (1994) (239)
A Generalized Profile Syntax for Biomolecular Sequence Motifs and its Function in Automatic Sequence Interpretation (1994) (233)
Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases (1991) (222)
Eukaryotic aldehyde dehydrogenase (ALDH) genes: human polymorphisms, and recommended nomenclature based on divergent evolution and chromosomal mapping. (1999) (216)
PROSITE: recent developments. (1994) (211)
Two‐dimensional gel electrophoresis for proteome projects: The effects of protein hydrophobicity and copy number (1998) (189)
SWISS-PROT: connecting biomolecular knowledge via a protein database. (2001) (185)
Complementation of the DNA repair defect in xeroderma pigmentosum group G cells by a human cDNA related to yeast RAD2 (1993) (182)
IntEnz, the integrated relational enzyme database (2004) (176)
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot (2008) (172)
neXtProt: a knowledge platform for human proteins (2011) (166)
Calling on a million minds for community annotation in WikiProteins (2008) (163)
The ENZYME data bank. (1993) (160)
InterPro--an integrated documentation resource for protein families, domains and functional sites. (2000) (157)
A superfamily of metalloenzymes unifies phosphopentomutase and cofactor‐independent phosphoglycerate mutase with alkaline phosphatases and sulfatases (1998) (156)
Protein sequence databases. (2004) (154)
The Swiss‐Prot variant page and the ModSNP database: A resource for sequence and structure information on human protein variants (2004) (149)
Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases (1991) (144)
The neXtProt knowledgebase on human proteins: 2017 update (2016) (142)
Automated annotation of microbial proteomes in SWISS-PROT (2003) (141)
Improving protein identification from peptide mass fingerprinting through a parameterized multi‐level scoring algorithm and an optimized peak detection (1999) (141)
New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling. (1998) (138)
Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins. (2014) (138)
Standard guidelines for the chromosome-centric human proteome project. (2012) (136)
The SWISS-PROT protein sequence data bank, recent developments (1993) (128)
Human liver protein map: A reference database established by microsequencing and gel comparison (1992) (122)
neXtProt: organizing protein knowledge in the context of human proteome projects. (2013) (120)
Plasma and red blood cell protein maps: Update 1993 (1993) (118)
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998 (1998) (118)
The neXtProt knowledgebase in 2020: data, tools and usability improvements (2019) (115)
Protein variety and functional diversity: Swiss-Prot annotation in its biological context. (2005) (115)
A molecular scanner to automate proteomic research and to display proteome images. (1999) (111)
Go hunting in sequence databases but watch out for the traps. (1996) (111)
PA26 is a candidate gene for heterotaxia in humans: identification of a novel PA26-related gene family in human and mouse (2003) (109)
The SWISS-PROT protein sequence database: its relevance to human molecular medical research. (1997) (107)
SWISS‐2DPAGE: A database of two‐dimensional gel electrophoresis images (1993) (107)
Annotating single amino acid polymorphisms in the UniProt/Swiss‐Prot knowledgebase (2008) (107)
UniPathway: a resource for the exploration and annotation of metabolic pathways (2011) (102)
Annotation of post‐translational modifications in the Swiss‐Prot knowledge base (2004) (100)
cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily. (1992) (100)
The neXtProt knowledgebase on human proteins: current status (2014) (99)
A high-stringency blueprint of the human proteome (2020) (98)
Protein identification with N and C-terminal sequence tags in proteome projects. (1998) (95)
Calcium-binding affinity and calcium-enhanced activity of Clostridium thermocellum endoglucanase D. (1990) (94)
Industrial‐scale proteomics: From liters of plasma to chemically synthesized proteins (2004) (93)
The 1999 SWISS-2DPAGE database update (2000) (93)
PROSITE: a dictionary of sites and patterns in proteins. (1992) (92)
FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification (2002) (91)
Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase. (2005) (90)
The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program. (2009) (88)
The human proteomics initiative (HPI). (2001) (87)
The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools. (2004) (83)
ProRule: a new database containing functional and structural information on PROSITE profiles (2005) (75)
The SWISS-PROT protein sequence data bank. (1991) (74)
Protein annotation: detective work for function prediction. (1998) (73)
Towards BioDBcore: a community-defined information specification for biological databases (2011) (71)
GPCRDB: information system for G protein-coupled receptors (2010) (65)
Kinases and Cancer (2018) (64)
N‐terminome analysis of the human mitochondrial proteome (2015) (63)
Low molecular weight proteins: A challenge for post‐genomic research (1998) (63)
The ABCD database: a repository for chemically defined antibodies (2019) (62)
Human aldehyde dehydrogenase genes: alternatively spliced transcriptional variants and their suggested nomenclature (2009) (62)
Standards for Reporting Enzyme Data: The STRENDA Consortium: What it aims to do and why it should be helpful (2014) (61)
NEWT, a new taxonomy portal (2003) (58)
Towards BioDBcore: a community-defined information specification for biological databases (2010) (57)
The ENZYME data bank in 1995 (1996) (55)
C11orf83, a Mitochondrial Cardiolipin-Binding Protein Involved in bc1 Complex Assembly and Supercomplex Stabilization (2015) (55)
Multiple parameter cross‐species protein identification using MultiIdent ‐ a world‐wide web accessible tool (1998) (53)
Representation of functional information in the SWISS-PROT Data Bank (1999) (51)
A testis-specific gene, TPTE, encodes a putative transmembrane tyrosine phosphatase and maps to the pericentromeric region of human chromosomes 21 and 13, and to chromosomes 15, 22, and Y. (1999) (49)
A testis-specific gene, TPTE, encodes a putative transmembrane tyrosine phosphatase and maps to the pericentromeric region of human chromosomes 21 and 13, and to chromosomes 15, 22, and Y (1999) (47)
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases (2015) (47)
EF‐hand motifs in inositol phospholipid‐specific phospholipase C (1990) (45)
Evolutionary relationships between catabolic pathways for aromatics: Conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmids (1987) (43)
Plant Protein Annotation in the UniProt Knowledgebase1 (2005) (42)
Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times! (2000) (41)
Sequence patterns in protein kinases (1988) (40)
The ENZYME data bank in 1999 (1999) (39)
GPCRDB: an information system for G protein-coupled receptors. (1998) (38)
A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17. (2013) (38)
OpenFluDB, a database for human and animal influenza virus (2010) (37)
Brain Metastasis Cell Lines Panel: A Public Resource of Organotropic Cell Lines (2020) (34)
A possible mechanism for metal-ion induced DNA-protein dissociation in a family of prokaryotic transcriptional regulators. (1993) (32)
CLASTR: The Cellosaurus STR similarity search tool ‐ A precious help for cell line authentication (2020) (32)
Proto-vav and gene expression (1992) (31)
A Standard Nomenclature for Referencing and Authentication of Pluripotent Stem Cells (2018) (31)
Annotation of glycoproteins in the SWISS‐PROT database (2001) (28)
Integrating two-dimensional gel databases using the Melanie II software. (1996) (27)
Functional Identification of APIP as Human mtnB, a Key Enzyme in the Methionine Salvage Pathway (2012) (26)
Protein Sequence Annotation in the Genome Era: The Annotation Concept of SWISS-PROT + TREMBL (1997) (26)
Exploring the Uncharacterized Human Proteome Using neXtProt. (2018) (26)
Quality control in databanks for molecular biology. (2000) (25)
The xylS gene positive regulator of TOL plasmid pWWO: Identification, sequence analysis and overproduction leading to constitutive expression of meta cleavage operon (1987) (24)
DERA is the human deoxyribose phosphate aldolase and is involved in stress response. (2014) (23)
Current status of the SWISS-2DPAGE database (1998) (23)
A large-scale protein-function database. (2010) (23)
Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines (2018) (23)
A diverse transketolase family that includes the RecP protein of Streptococcus pneumoniae, a protein implicated in genetic recombination. (1993) (23)
The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis. (1994) (23)
The ENZYME data bank (1993) (22)
The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis, its status in 1995 (1996) (22)
Sequence similarities in calcium-binding proteins (1988) (21)
Proposals for the naming of chloroplast genes. III. Nomenclature for open reading frames encoded in chloroplast genomes (1994) (20)
Animal Toxins: How is Complexity Represented in Databases? (2010) (19)
A comprehensive web resource on RNA helicases from the baker's yeast Saccharomyces cerevisiae (2000) (18)
C2orf62 and TTC17 Are Involved in Actin Organization and Ciliogenesis in Zebrafish and Human (2014) (18)
Deep Question Answering for protein annotation (2015) (16)
The future of annotation/biocuration (2009) (16)
Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression (2014) (16)
Annotation of glycoproteins in the SWISS-PROT database. (2001) (16)
Key challenges for the creation and maintenance of specialist protein resources (2015) (15)
Using PC/GENE for protein and nucleic acid analysis. (1988) (15)
A novel zinc‐binding motif found in two ubiquitous deaminase families (1994) (15)
Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project. (2018) (15)
Converting neXtProt into Linked Data and nanopublications (2015) (15)
Managing the Data Explosion A Report on the HUPO‐PSI Workshop August 2008, Amsterdam, The Netherlands (2009) (14)
The Feature-Viewer: a visualization tool for positional annotations on a sequence (2020) (14)
Triage by ranking to support the curation of protein interactions (2017) (14)
Sharing of Worldwide Spread Knowledge Using Hypermedia Facilities & Fast Communication Protocols (Mosaic and World Wide Web): The Example of ExPASy (1995) (14)
Missing Protein Landscape of Human Chromosomes 2 and 14: Progress and Current Status. (2016) (14)
Post‐translational modifications: A challenge for proteomics and bioinformatics (2004) (13)
The SWISS-2DPAGE database: what has changed during the last year (1999) (13)
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support (2014) (13)
Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase (2009) (12)
A cross-reference table between the Protein Data Bank of macromolecular structures and the National Biomedical Research Foundation-Protein Identification Resource amino acid sequence data bank. (1989) (11)
SEQANALREF: a sequence analysis bibliographic reference databank (1991) (10)
2-D databases on the World Wide Web. (1999) (10)
Annotation of functional impact of voltage‐gated sodium channel mutations (2017) (10)
The human proteome project: Current state and future direction. (2011) (9)
Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al (2001) (8)
The Swiss-Prot Protein Sequence Data Bank User Manual (1997) (8)
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat (2015) (8)
Amino acid sequence determination by gas chromatography—mass spectrometry of permethylated peptides (1983) (7)
Constructing a 2-D database for the World Wide Web. (1999) (7)
A new bioinformatics tool to help assess the significance of BRCA1 variants (2018) (7)
ICEPO: the ion channel electrophysiology ontology (2016) (7)
Design and Implementation of the UniProt Website (2008) (6)
LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces (1994) (6)
Cell Lines as Biological Models: Practical Steps for More Reliable Research. (2019) (6)
The ExPASy proteome WWW server in 2003 (2003) (4)
Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students (2021) (4)
Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008 (2008) (4)
Genome maps 8. Building gene families. Wall chart. (1997) (3)
CALOHA: A new human anatomical ontology as a support for complex queries and tissue expression display in neXtProt. (2011) (3)
Data Integration in the Life Sciences, 5th International Workshop, DILS 2008, Evry, France, June 25-27, 2008. Proceedings (2008) (3)
[From genome to proteome--aim of human proteomics]. (2004) (3)
UniProtKB/Swiss-Prot: New and Future Developments (2008) (3)
Suggestion to research groups working on protein and peptide sequence. (1982) (3)
Correction to "Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project". (2019) (2)
Internet Resources for Protein Identification and Characterization (2007) (2)
Bioinformatics for Human Proteomics: Current State and Future Status (2010) (2)
Data Integration in Proteomics (2007) (1)
Creating a specialist protein resource network (2015) (1)
Proceedings of the 5th international workshop on Data Integration in the Life Sciences (2008) (1)
1 The SWISS-PROT protein sequence data bank and its supplement TrEMBL in (1998) (1)
Snake proteins and nucleic acids (1993) (1)
Mass spectrometry has evolved and matured to a level where it is able to assess the complexity of the human proteome. We discuss some of the expected challenges ahead and promising strategies for success. (2010) (1)
A Preliminary Study on the Prediction of Human Protein Functions (2011) (1)
Functionally and structurally relevant residues in PROSITE motif descriptors (2005) (0)
Cellosaurus micro-review 1: cellonauts, spacefaring cell lines (2019) (0)
52. BrMPANEL: A PUBLIC RESOURCE OF ORGANOTROPIC CELL LINES (2020) (0)
Protein sequence databases in the context of genome projects (1994) (0)
LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces. (1994) (0)
InterPro - prediction of protein families, domains and functional sites. (2004) (0)
The impact of 3D structures on a protein knowledgebase: from proteins to systems (2008) (0)
Chromosome-Centric Human Proteome Project: An Initial Profiling of Proteins Encoded by Chromosome 13 in the Human Placenta (2011) (0)
Signal Traitment and Virtual Images Production (1/2) (2005) (0)
BIOINFORMATICS ProRule: a new database containing functional and structural information on PROSITE proﬁles (2005) (0)
17 3583-3589 PROSITE : recent developments (2017) (0)
The application of bioinformatics to mass spectrometry. (2002) (0)
Meet the Editorial Board Member (2022) (0)
Complex Assembly and Supercomplex Stabilization (2022) (0)
Title A Standard Nomenclature for Referencing and Authenticationof Pluripotent Stem Cells (2019) (0)
New Developments in the Linking of Biological Databases and Computer-Generation of Annotation (1996) (0)
Protein Variations: Resources and Tools (2004) (0)
Exploring neXtProt data and beyond: A SPARQLing solution (2019) (0)
Federating human data using neXtProt SPARQL (2019) (0)
Evidence for the existence of a mutated enkephalin sequence in preproenkephalin (1982) (0)
UniProtKB/Swiss-Prot manual and automated annotation of complete proteomes: the Dictyostelium discoideum case study (2009) (0)
Protein variety and functional diversity: UniProtKB/Swiss-Prot annotation in its biological context (2008) (0)
Integrin-Mediated Signaling Induced by Simian Virus 40 Leads to Transient Uncoupling of Cortical Actin and the Plasma Membrane (2018) (0)
A new bioinformatics tool to help assess the significance of BRCA1 variants (2018) (0)
Protein Sequence Variants: Resources and Tools (2008) (0)
Standard Guidelines for the Chromosome-Centric (2012) (0)
Moving Forward with Proteomics Initiatives (2003) (0)
Molecular Analysis of the Symbiotic Replicon of Rhizobium sp. NGR234 (1998) (0)
Nextprot: the new human protein knowledge resource (2011) (0)
Mutational analysis of APIP activity. (2013) (0)
Nextprot: The human protein-centric knowledge platform, status and future developments (2013) (0)
New Developments in Linking of Biological Databases and Computer-Generation of Annotations: SWISS-PROT and Its Computer-Annotated Supplement TREMBL (1996) (0)
Issue Information (2017) (0)

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