Andreas Dräger

Q: What Schools Are Affiliated With Andreas Dräger

Andreas Dräger is affiliated with the following schools: University of California, San Diego, University of Tübingen

Andreas Dräger's AcademicInfluence.com Rankings

Andreas Dräger

Biology

#12798

World Rank

#16298

Historical Rank

Systems Biology

#37

World Rank

#37

Historical Rank

Bioinformatics

#209

World Rank

#211

Historical Rank

Computational Biology

#383

World Rank

#385

Historical Rank

biology Degrees

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Biology

Andreas Dräger's Degrees

PhD Bioinformatics University of California, San Diego
Masters Bioinformatics University of Tübingen
Bachelors Bioinformatics University of Tübingen

Why Is Andreas Dräger Influential?

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According to Wikipedia, Andreas Dräger is a German bioinformatician who leads the research group for Computational Systems Biology of Infections and Antimicrobial-Resistant Pathogens at the University of Tübingen. Education In high school, Dräger was fascinated by computer science and recent advancements in genetics and biotechnology in the late 1990s. When he learned about a new degree program that allowed combining those technologies, he was immediately inspired. So, Dräger studied bioinformatics at the Martin Luther University of Halle-Wittenberg in Halle from 2000 to 2006. He worked as an intern for genome sequencing at the Max Planck Institute for Molecular Genetics, Berlin. He prepared his thesis about heavy-metal-resistant bacteria at the microbiology department of the University of Illinois at Chicago. Dräger earned his doctorate at the Center for Bioinformatics in Tübingen , focusing on the dynamic simulation of metabolic networks in a virtual liver. During this time, he worked as a visiting research student for software engineering at Keio University in Yokohama in 2010. After returning from Japan, the Faculty of Science of the University of Tübingen honored his thesis with the 2011 dissertation award.

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Andreas Dräger's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models (2015) (614)
BioJava: an open-source framework for bioinformatics (2008) (362)
Recon3D: A Resource Enabling A Three-Dimensional View of Gene Variation in Human Metabolism (2018) (319)
Controlled vocabularies and semantics in systems biology (2011) (304)
Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways (2015) (270)
MEMOTE for standardized genome-scale metabolic model testing (2020) (214)
Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19 (2020) (205)
Path2Models: large-scale generation of computational models from biochemical pathway maps (2013) (167)
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools (2013) (138)
SBML Level 3: an extensible format for the exchange and reuse of biological models (2020) (137)
BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree (2019) (123)
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms (2020) (107)
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2 (2018) (91)
JSBML: a flexible Java library for working with SBML (2011) (91)
Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies (2009) (80)
SBMLsqueezer: A CellDesigner plug-in to generate kinetic rate equations for biochemical networks (2008) (71)
Improving Collaboration by Standardization Efforts in Systems Biology (2014) (66)
Precise generation of systems biology models from KEGG pathways (2013) (64)
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core (2018) (63)
KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats (2011) (63)
Synthetic promoters capable of driving robust nuclear gene expression in the green alga Chlamydomonas reinhardtii (2016) (63)
Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655 (2018) (63)
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite (2018) (61)
Do genome-scale models need exact solvers or clearer standards? (2015) (60)
Harmonizing semantic annotations for computational models in biology (2018) (42)
Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data (2015) (41)
BowTieBuilder: modeling signal transduction pathways (2009) (41)
JSBML 1.0: providing a smorgasbord of options to encode systems biology models (2015) (41)
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0 (2019) (38)
The systems biology simulation core algorithm (2013) (36)
CySBML: a Cytoscape plugin for SBML (2012) (36)
FBA reveals guanylate kinase as a potential target for antiviral therapies against SARS-CoV-2 (2020) (30)
Evaluation of rate law approximations in bottom-up kinetic models of metabolism (2016) (28)
SBML2LaTEX: Conversion of SBML files into human-readable reports (2009) (27)
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core (2018) (26)
Coordinating Role of RXRα in Downregulating Hepatic Detoxification during Inflammation Revealed by Fuzzy-Logic Modeling (2016) (25)
Inferring statin-induced gene regulatory relationships in primary human hepatocytes (2011) (25)
SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks (2015) (24)
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms (2021) (24)
Qualitative translation of relations from BioPAX to SBML qual (2012) (22)
ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis (2016) (18)
Systems biology graphical notation markup language (SBGNML) version 0.3 (2020) (18)
Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions (2015) (17)
SBMLSimulator: A Java Tool for Model Simulation and Parameter Estimation in Systems Biology (2014) (16)
Parkinson’s disease: dopaminergic nerve cell model is consistent with experimental finding of increased extracellular transport of α-synuclein (2013) (16)
ModuleMaster: A new tool to decipher transcriptional regulatory networks (2010) (15)
Genome-Scale Metabolic Model of Infection with SARS-CoV-2 Mutants Confirms Guanylate Kinase as Robust Potential Antiviral Target (2021) (13)
TFpredict and SABINE: Sequence-Based Prediction of Structural and Functional Characteristics of Transcription Factors (2013) (13)
Visualizing metabolic network dynamics through time-series metabolomic data (2020) (12)
COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms (2020) (11)
Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2 (2020) (11)
On the Benefits of Multimodal Optimization for Metablic Network Modeling (2009) (11)
A Padawan Programmer's Guide to Developing Software Libraries. (2017) (10)
Benchmarking evolutionary algorithms on convenience kinetics models of the valine and leucine biosynthesis in C. glutamicum (2007) (9)
Clinical Applications of Metabolic Models in SBML Format (2020) (9)
Automating mathematical modeling of biochemical reaction networks (2010) (8)
COVID‐19 Disease Map, a computational knowledge repository of virus‐host interaction mechanisms (2021) (8)
Comparing various evolutionary algorithms on the parameter optimization of the valine and leucine biosynthesis in corynebacterium glutamicum (2007) (8)
Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus (2021) (7)
Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms (2020) (7)
The Systems Biology Graphical Notation: Current Status and Applications in Systems Medicine (2020) (7)
The systems biology simulation core library (2020) (7)
Genome-Scale Metabolic Modeling of Escherichia coli and Its Chassis Design for Synthetic Biology Applications. (2021) (6)
Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions (2015) (6)
First Genome-Scale Metabolic Model of Dolosigranulum pigrum Confirms Multiple Auxotrophies (2021) (6)
Inferring Gene Regulatory Networks by Machine Learning Methods (2007) (6)
JSBML: a flexible and entirely Java-based library for working with SBML (2011) (5)
GRN2SBML: automated encoding and annotation of inferred gene regulatory networks complying with SBML (2013) (5)
Computational Modeling of Biochemical Networks (2011) (5)
Inferring transcriptional regulators for sets of co-expressed genes by multi-objective evolutionary optimization (2011) (5)
An updated genome-scale metabolic network reconstruction of Pseudomonas aeruginosa PA14 to characterize mucin-driven shifts in bacterial metabolism (2021) (4)
NCMW: A Python Package to Analyze Metabolic Interactions in the Nasal Microbiome (2022) (4)
High-Quality Genome-Scale Reconstruction of Corynebacterium glutamicum ATCC 13032 (2021) (4)
Overview: Standards for Modeling in Systems Medicine (2020) (3)
Longitudinal multi-omics analysis identifies responses of megakaryocytes, erythroid cells and plasmablasts as hallmarks of severe COVID-19 trajectories (2020) (3)
Insights into Dynamic Network States Using Metabolomic Data. (2019) (3)
Towards the human nasal microbiome: Simulating D. pigrum and S. aureus (2022) (3)
Computational Model Informs Effective Control Interventions against Y. enterocolitica Co-Infection (2020) (3)
Context-based generation of kinetic equations with SBMLsqueezer 1.3 (2010) (2)
SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems (2020) (2)
Model-based prediction of bacterial population dynamics in gastrointestinal infection (2020) (2)
Parameter Estimation, Metabolic Network Modeling (2013) (2)
Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing (2020) (2)
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes (2019) (2)
draeger-lab/SBML-ME: SBMLme converter (2018) (2)
Network Inference by Considering Multiple Objectives: Insights from In Vivo Transcriptomic Data Generated by a Synthetic Network (2010) (2)
SBMLsqueezer: Kinetic Laws (2008) (1)
Parkinson’s disease: dopaminergic nerve cell model is consistent with experimental finding of increased extracellular transport of α-synuclein (2013) (1)
Genome-scale model of Pseudomonas aeruginosa metabolism unveils virulence and drug potentiation (2023) (1)
Modelling IL-6 mediated regulation of ADME genes (2014) (1)
FBA reveals guanylate kinase as potential target for antiviral therapies against coronavirus SARS-CoV-2 (2020) (1)
An integrated systems-biology platform for power-to-gas technology (2022) (1)
FluxomicsExplorer: Differential visual analysis of Flux Sampling based on Metabolomics (2022) (1)
Visual analysis of ﬂux sampling simulations based on extracellular metabolomic measurments (2020) (0)
A genome-scale metabolic model of Klebsiella pneumoniae HS11286 (2022) (0)
Genome-scale metabolic modelling of Acinetobacter baumannii ATCC 17978 (2022) (0)
Genome-scale modeling of Pseudomonas aeruginosa PA14 unveils its broad metabolic capabilities and role of metabolism in drug potentiation (2021) (0)
standard-GEM: standardization of open-source genome-scale metabolic models (2023) (0)
Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing (2020) (0)
Reconstruction of a metabolic model of Proteus vulgaris (2021) (0)
SBMLWebApp: Web-based Simulation, Steady-State Analysis, and Parameter Estimation of Systems Biology Models (2021) (0)
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes (2019) (0)
The ZBIT systems biology software and web-service collection (2016) (0)
Reconstruction of a metabolic model of Staphylococcus lugdunensis (2021) (0)
Reconstruction of Corynebacterium striatum KC-Na-01 (2020) (0)
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms (2020) (0)
Graphical Editor for Systems Biology Models (2020) (0)
New standard resources for systems biology: BiGG Models database and the visual pathway editor Escher (2016) (0)
context-sensitive creation of kinetic equations in biochemical (2015) (0)
MEMOTE for standardized genome-scale metabolic model testing (2020) (0)
A Computational Model of Bacterial Population Dynamics in Gastrointestinal Yersinia enterocolitica Infections in Mice (2022) (0)
Recent software and services to support the SBML community (2016) (0)
A Computational Model to Inform Effective Control Interventions against Yersinia enterocolitica Coinfection (2020) (0)
A Web-based Visual Analytics Application for Biological Networks (2020) (0)
Computational modelling in health and disease: highlights of the 6th annual SysMod meeting (2022) (0)
Hierarchical modelling of microbial communities (2023) (0)
Inductive proximity switch and the control method for operating the (2014) (0)
Reconstruction of strain-specific metabolic models of Staphylococcus haemolyticus (2022) (0)
A Tool for Interactive Comparative Sequence Analysis (2005) (0)
New workflow predicts drug targets against SARS-CoV-2 via metabolic changes in infected cells (2023) (0)
draeger-lab/SBMLme: SBMLme converter (2018) (0)
Modeling the valine and leucine metabolism in Corynebacterium glutamicum (2009) (0)
Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus (2021) (0)
An updated genome-scale metabolic network reconstruction of Pseudomonas aeruginosa PA14 to characterize mucin-driven shifts in bacterial metabolism (2021) (0)
Bachelor Thesis Bioinformatics Time Series Data Visualization in Escher (2017) (0)
Reconstruction of a genome-scale metabolic network of Staphylococcus lugdunensis N920143 (2022) (0)
Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms (2020) (0)
ProDGe: investigating protein-protein interactions at the domain level (2011) (0)
Genome-scale metabolic models consistently predict in vitro characteristics of Corynebacterium striatum (2023) (0)
Visualization and creation of biochemical networks with Escher (2017) (0)
sbmlteam/jsbml: JSBML 1.5 (2020) (0)

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Other Resources About Andreas Dräger

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What Schools Are Affiliated With Andreas Dräger?

Andreas Dräger is affiliated with the following schools:

Andreas Dräger's Academic­Influence.com Rankings

Andreas Dräger's Degrees

Why Is Andreas Dräger Influential?

Andreas Dräger's Published Works

Published Works

Other Resources About Andreas Dräger

What Schools Are Affiliated With Andreas Dräger?

Andreas Dräger's AcademicInfluence.com Rankings