Andreas Keller
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Professor for Clinical Bioinformatics
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Andreas Kellerbiology Degrees
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Bioinformatics
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Biology
Andreas Keller's Degrees
- PhD Bioinformatics University of Zurich
- Masters Computer Science ETH Zurich
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(Suggest an Edit or Addition)Andreas Keller's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Distribution of miRNA expression across human tissues (2016) (690)
- Atlas of the clinical genetics of human dilated cardiomyopathy. (2014) (432)
- A blood based 12-miRNA signature of Alzheimer disease patients (2013) (421)
- New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing (2012) (398)
- GeneTrail—advanced gene set enrichment analysis (2007) (359)
- Multiple Sclerosis: MicroRNA Expression Profiles Accurately Differentiate Patients with Relapsing-Remitting Disease from Healthy Controls (2009) (347)
- Toward the blood-borne miRNome of human diseases (2011) (333)
- Undulating changes in human plasma proteome profiles across the lifespan (2019) (317)
- An estimate of the total number of true human miRNAs (2019) (295)
- Dysregulation of brain and choroid plexus cell types in severe COVID-19 (2021) (293)
- MicroRNA signatures in total peripheral blood as novel biomarkers for acute myocardial infarction (2010) (264)
- Dehydroepiandrosterone and androsterone levels in human plasma: effect of age and sex; day-to-day and diurnal variations. (1957) (259)
- An integer linear programming approach for finding deregulated subgraphs in regulatory networks (2011) (259)
- PLSDB: a resource of complete bacterial plasmids (2018) (227)
- Specific miRNA Disease Biomarkers in Blood, Serum and Plasma: Challenges and Prospects (2016) (227)
- Mutations in the SIX1/2 pathway and the DROSHA/DGCR8 miRNA microprocessor complex underlie high-risk blastemal type Wilms tumors. (2015) (226)
- Swarm Learning for decentralized and confidential clinical machine learning (2021) (224)
- Altered microRNA expression profiles of human spermatozoa in patients with different spermatogenic impairments. (2013) (198)
- Towards the sustainable discovery and development of new antibiotics (2021) (198)
- Alterations in cardiac DNA methylation in human dilated cardiomyopathy (2013) (196)
- Whole blood-derived miRNA profiles as potential new tools for ovarian cancer screening (2010) (184)
- Targeted Next-Generation Sequencing for the Molecular Genetic Diagnostics of Cardiomyopathies (2011) (179)
- A specific miRNA signature in the peripheral blood of glioblastoma patients (2011) (164)
- miRNAs in lung cancer - Studying complex fingerprints in patient's blood cells by microarray experiments (2009) (152)
- Clinical genetics and outcome of left ventricular non-compaction cardiomyopathy (2017) (149)
- Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies. (2013) (149)
- High-throughput miRNA profiling of human melanoma blood samples (2010) (148)
- Genotype-phenotype associations in dilated cardiomyopathy: meta-analysis on more than 8000 individuals (2017) (137)
- XIAP variants in male Crohn's disease (2014) (136)
- Multi-omics enrichment analysis using the GeneTrail2 web service (2016) (133)
- A human brain vascular atlas reveals diverse mediators of Alzheimer’s risk (2022) (133)
- Stable serum miRNA profiles as potential tool for non-invasive lung cancer diagnosis (2011) (131)
- Genome‐wide miRNA signatures of human longevity (2012) (131)
- Multivariate miRNA signatures as biomarkers for non-ischaemic systolic heart failure. (2013) (130)
- miEAA: microRNA enrichment analysis and annotation (2016) (129)
- A comprehensive, cell specific microRNA catalogue of human peripheral blood (2017) (128)
- A genome-wide association study identifies 6p21 as novel risk locus for dilated cardiomyopathy. (2014) (126)
- MicroRNAs Targeting Oncogenes Are Down-Regulated in Pancreatic Malignant Transformation from Benign Tumors (2012) (124)
- Epigenome-Wide Association Study Identifies Cardiac Gene Patterning and a Novel Class of Biomarkers for Heart Failure (2017) (120)
- Diagnosis of Pancreatic Ductal Adenocarcinoma and Chronic Pancreatitis by Measurement of microRNA Abundance in Blood and Tissue (2012) (113)
- Comprehensive analysis of microRNA profiles in multiple sclerosis including next-generation sequencing (2014) (113)
- EDISON-WMW: Exact Dynamic Programing Solution of the Wilcoxon–Mann–Whitney Test (2016) (110)
- Panel of five microRNAs as potential biomarkers for the diagnosis and assessment of male infertility. (2014) (106)
- MicroRNA expression profiles in human testicular tissues of infertile men with different histopathologic patterns. (2014) (102)
- Specific peripheral miRNA profiles for distinguishing lung cancer from COPD. (2011) (101)
- cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs (2016) (100)
- miRTargetLink—miRNAs, Genes and Interaction Networks (2016) (97)
- miRPathDB: a new dictionary on microRNAs and target pathways (2016) (96)
- A comprehensive profile of circulating RNAs in human serum (2017) (95)
- A dictionary on microRNAs and their putative target pathways (2010) (93)
- Frequent overexpression of the genes FXR1, CLAPM1 and EIF4G located on amplicon 3q26‐27 in squamous cell carcinoma of the lung (2007) (93)
- miRPathDB 2.0: a novel release of the miRNA Pathway Dictionary Database (2019) (92)
- Exome sequencing analysis reveals variants in primary immunodeficiency genes in patients with very early onset inflammatory bowel disease. (2015) (92)
- GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments (2008) (92)
- MicroRNA in diagnosis and therapy monitoring of early-stage triple-negative breast cancer (2018) (88)
- Population Genomic Analysis of Ancient and Modern Genomes Yields New Insights into the Genetic Ancestry of the Tyrolean Iceman and the Genetic Structure of Europe (2014) (88)
- The miRNome of Alzheimer's disease: consistent downregulation of the miR-132/212 cluster (2017) (87)
- Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19 (2021) (86)
- Biomarker changes after strenuous exercise can mimic pulmonary embolism and cardiac injury--a metaanalysis of 45 studies. (2015) (85)
- About miRNAs, miRNA seeds, target genes and target pathways (2017) (82)
- miRNAs can be generally associated with human pathologies as exemplified for miR-144* (2014) (81)
- Deciphering the porcine intestinal microRNA transcriptome (2010) (79)
- miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems (2020) (79)
- Influence of the confounding factors age and sex on microRNA profiles from peripheral blood. (2014) (79)
- Complex humoral immune response against a benign tumor: frequent antibody response against specific antigens as diagnostic targets. (2005) (78)
- Towards Personalized Cardiology: Multi-Scale Modeling of the Failing Heart (2015) (74)
- miRCarta: a central repository for collecting miRNA candidates (2017) (72)
- Natalizumab restores aberrant miRNA expression profile in multiple sclerosis and reveals a critical role for miR-20b (2014) (69)
- Immunogenicity of autoantigens (2011) (66)
- Distribution of microRNA biomarker candidates in solid tissues and body fluids (2016) (66)
- miRNA assays in the clinical laboratory: workflow, detection technologies and automation aspects (2017) (65)
- Can circulating miRNAs live up to the promise of being minimal invasive biomarkers in clinical settings? (2016) (65)
- Next-generation sequencing identifies novel microRNAs in peripheral blood of lung cancer patients. (2011) (64)
- Deep-learning based detection of gastric precancerous conditions (2019) (64)
- Altered micro-ribonucleic acid expression profiles of extracellular microvesicles in the seminal plasma of patients with oligoasthenozoospermia. (2016) (63)
- High-throughput qRT-PCR validation of blood microRNAs in non-small cell lung cancer (2015) (61)
- BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation (2017) (61)
- Evaluating the Use of Circulating MicroRNA Profiles for Lung Cancer Detection in Symptomatic Patients. (2020) (60)
- A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis (2009) (57)
- Transcriptome analysis by GeneTrail revealed regulation of functional categories in response to alterations of iron homeostasis in Arabidopsis thaliana (2011) (55)
- Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs (2017) (55)
- The human miRNA repertoire of different blood compounds (2014) (55)
- Computation of significance scores of unweighted Gene Set Enrichment Analyses (2007) (55)
- What makes a blood cell based miRNA expression pattern disease specific? - A miRNome analysis of blood cell subsets in lung cancer patients and healthy controls (2014) (54)
- Refining diagnostic microRNA signatures by whole-miRNome kinetic analysis in acute myocardial infarction. (2013) (54)
- Circulating serum miRNAs as potential biomarkers for nephroblastoma (2015) (54)
- Emerging concepts of miRNA therapeutics: from cells to clinic. (2022) (54)
- Prioritizing and selecting likely novel miRNAs from NGS data (2015) (53)
- Bias in High-Throughput Analysis of miRNAs and Implications for Biomarker Studies. (2016) (51)
- Validating Alzheimer's disease micro RNAs using next-generation sequencing (2016) (50)
- CD4+ T cells contribute to neurodegeneration in Lewy body dementia (2021) (50)
- MicroRNAs – Important Molecules in Lung Cancer Research (2011) (50)
- Protein Kinase D2 Controls Cardiac Valve Formation in Zebrafish by Regulating Histone Deacetylase 5 Activity (2011) (49)
- A novel whole-blood miRNA signature for a rapid diagnosis of pulmonary tuberculosis (2015) (49)
- GeneTrail 3: advanced high-throughput enrichment analysis (2020) (48)
- Intestinal Salmonella typhimurium Infection Leads to miR-29a Induced Caveolin 2 Regulation (2013) (48)
- Machine Learning to Detect Alzheimer’s Disease from Circulating Non-coding RNAs (2019) (48)
- Staphylococcus aureus ClpC ATPase is a late growth phase effector of metabolism and persistence (2009) (47)
- Novel autoantigens immunogenic in COPD patients (2009) (46)
- Differential blood-based diagnosis between benign prostatic hyperplasia and prostate cancer: miRNA as source for biomarkers independent of PSA level, Gleason score, or TNM status (2016) (46)
- miR-34a: a new player in the regulation of T cell function by modulation of NF-κB signaling (2019) (45)
- miRTargetLink 2.0—interactive miRNA target gene and target pathway networks (2021) (43)
- A Different View on DNA Amplifications Indicates Frequent, Highly Complex, and Stable Amplicons on 12q13-21 in Glioma (2008) (41)
- A mouse tissue atlas of small noncoding RNA (2020) (41)
- Identification of lung cancer with high sensitivity and specificity by blood testing (2010) (41)
- Bias in recent miRBase annotations potentially associated with RNA quality issues (2017) (41)
- Combining miRNA and mRNA Expression Profiles in Wilms Tumor Subtypes (2016) (39)
- Circulating Biomarker Panels in Alzheimer's Disease (2015) (38)
- The TGF‐β‐inducible miR‐23a cluster attenuates IFN‐γ levels and antigen‐specific cytotoxicity in human CD8+ T cells (2014) (38)
- Genomic structural variations lead to dysregulation of important coding and non‐coding RNA species in dilated cardiomyopathy (2017) (38)
- Micro-ribonucleic acids and extracellular vesicles repertoire in the spent culture media is altered in women undergoing In Vitro Fertilization (2017) (37)
- Paleoproteomic study of the Iceman’s brain tissue (2013) (36)
- Toward an early diagnosis of lung cancer: An autoantibody signature for squamous cell lung carcinoma (2008) (35)
- Sparse Modeling Reveals miRNA Signatures for Diagnostics of Inflammatory Bowel Disease (2015) (35)
- miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases (2012) (35)
- Sources to variability in circulating human miRNA signatures (2017) (35)
- MiR-34a-3p alters proliferation and apoptosis of meningioma cells in vitro and is directly targeting SMAD4, FRAT1 and BCL2 (2017) (34)
- The Iceman’s Last Meal Consisted of Fat, Wild Meat, and Cereals (2018) (34)
- Genome-wide MicroRNA Expression Profiles in COPD: Early Predictors for Cancer Development (2018) (33)
- A human brain vascular atlas reveals diverse cell mediators of Alzheimer’s disease risk (2021) (33)
- MicroRNA expression changes after lung cancer resection (2012) (32)
- Dehydroepiandrosterone, androsterone and 17-hydroxycorticosteroid levels in maternal and cord plasma in cases of vaginal delivery. (1955) (32)
- Proteomic study of human glioblastoma multiforme tissue employing complementary two-dimensional liquid chromatography- and mass spectrometry-based approaches. (2009) (32)
- MicroRNA in vitro diagnostics using immunoassay analyzers. (2015) (31)
- Amplicons on chromosome 12q13‐21 in glioblastoma recurrences (2010) (31)
- Differentially regulated miRNAs as prognostic biomarkers in the blood of primary CNS lymphoma patients. (2015) (30)
- A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors (2006) (30)
- Analysis of circulating microRNAs in patients with repaired Tetralogy of Fallot with and without heart failure (2017) (30)
- From next-generation sequencing alignments to accurate comparison and validation of single-nucleotide variants: the pibase software (2012) (29)
- MicroRNA-regulated pathways of flow-stimulated angiogenesis and vascular remodeling in vivo (2019) (29)
- Whole miRNome-wide Differential Co-expression of MicroRNAs (2012) (28)
- Untargeted metabolomics by high resolution mass spectrometry coupled to normal and reversed phase liquid chromatography as a tool to study the in vitro biotransformation of new psychoactive substances (2019) (28)
- Molecular hallmarks of heterochronic parabiosis at single-cell resolution (2020) (28)
- Circulating small non-coding RNAs associated with age, sex, smoking, body mass and physical activity (2018) (28)
- Next-generation sequencing identifies altered whole blood microRNAs in neuromyelitis optica spectrum disorder which may permit discrimination from multiple sclerosis (2015) (27)
- Common diseases alter the physiological age-related blood microRNA profile (2020) (27)
- Disrupting biological sensors of force promotes tissue regeneration in large organisms (2021) (27)
- Increased Seroreactivity to Glioma-Expressed Antigen 2 in Brain Tumor Patients under Radiation (2008) (27)
- Identification of miR-34a-target interactions by a combined network based and experimental approach (2016) (27)
- Privacy in Epigenetics: Temporal Linkability of MicroRNA Expression Profiles (2016) (27)
- Genome wide expression profiling identifies specific deregulated pathways in meningioma (2009) (26)
- Posttranscriptional deregulation of signaling pathways in meningioma subtypes by differential expression of miRNAs. (2015) (26)
- miR-34a as hub of T cell regulation networks (2019) (26)
- StructMAn: annotation of single-nucleotide polymorphisms in the structural context (2016) (26)
- Validation of human microRNA target pathways enables evaluation of target prediction tools (2020) (26)
- New insights into the genetics of glioblastoma multiforme by familial exome sequencing (2014) (26)
- Evidence for the Mode of Action of the Highly Cytotoxic Streptomyces Polyketide Kendomycin (2007) (25)
- miRNATissueAtlas2: an update to the human miRNA tissue atlas (2021) (25)
- Towards Clinical Applications of Blood-Borne miRNA Signatures: The Influence of the Anticoagulant EDTA on miRNA Abundance (2015) (25)
- Pattern of Serum Autoantibodies Allows Accurate Distinction between a Tumor and Pathologies of the Same Organ (2008) (25)
- Treatment-independent miRNA signature in blood of wilms tumor patients (2012) (25)
- Longitudinal study on circulating miRNAs in patients after lung cancer resection (2015) (25)
- MicroRNAs in combined spent culture media and sperm are associated with embryo quality and pregnancy outcome. (2020) (25)
- The blood-borne miRNA signature of lung cancer patients is independent of histology but influenced by metastases (2014) (24)
- miRNAs and sports: tracking training status and potentially confounding diagnoses (2016) (24)
- Cigarette smoke and electronic cigarettes differentially activate bronchial epithelial cells (2020) (24)
- Broad transcriptional dysregulation of brain and choroid plexus cell types with COVID-19 (2020) (24)
- Systematic permutation testing in GWAS pathway analyses: identification of genetic networks in dilated cardiomyopathy and ulcerative colitis (2014) (22)
- Automated optimization of XCMS parameters for improved peak picking of liquid chromatography-mass spectrometry data using the coefficient of variation and parameter sweeping for untargeted metabolomics. (2018) (22)
- Low miR-150-5p and miR-320b Expression Predicts Reduced Survival of COPD Patients (2019) (22)
- Improving seroreactivity-based detection of glioma. (2009) (22)
- Blood Born miRNAs Signatures that Can Serve as Disease Specific Biomarkers Are Not Significantly Affected by Overall Fitness and Exercise (2014) (21)
- Deregulated microRNA and mRNA expression profiles in the peripheral blood of patients with Marfan syndrome (2018) (21)
- Genomic correlates of atherosclerosis in ancient humans. (2014) (20)
- The murine transcriptome reveals global aging nodes with organ-specific phase and amplitude (2019) (20)
- TRPC1‐ and TRPC3‐dependent Ca2+ signaling in mouse cortical astrocytes affects injury‐evoked astrogliosis in vivo (2017) (20)
- Differential expression of miR-23a/b-3p and its target genes in male patients with subfertility. (2019) (20)
- The intestinal factor Tff3 and a miRNA network regulate murine caloric metabolism (2010) (20)
- A high‐resolution map of the human small non‐coding transcriptome (2018) (20)
- What's the target: understanding two decades of in silico microRNA-target prediction (2019) (19)
- Modulation of intracellular calcium signaling by microRNA-34a-5p (2018) (19)
- Assessing the heterogeneity of in silico plasmid predictions based on whole-genome-sequenced clinical isolates (2019) (19)
- Nonconjugated adrenocortical steroids in human plasma: comparison of the Nelson of Samuels method with paper chromatographic techniques. (1956) (19)
- Deep sequencing of sncRNAs reveals hallmarks and regulatory modules of the transcriptome during Parkinson’s disease progression (2021) (19)
- miRSwitch: detecting microRNA arm shift and switch events (2020) (18)
- Single-cell microRNA sequencing method comparison and application to cell lines and circulating lung tumor cells (2021) (18)
- Influence of next-generation sequencing and storage conditions on miRNA patterns generated from PAXgene blood. (2015) (18)
- The composition of the pulmonary microbiota in sarcoidosis – an observational study (2019) (18)
- Novel immunogenic antigens increase classification accuracy in meningioma to 93.84% (2011) (18)
- Protein- versus peptide fractionation in the first dimension of two-dimensional high-performance liquid chromatography-matrix-assisted laser desorption/ionization tandem mass spectrometry for qualitative proteome analysis of tissue samples. (2010) (18)
- Identification of Novel SNPs in Glioblastoma Using Targeted Resequencing (2011) (18)
- Syntaxin 8 is required for efficient lytic granule trafficking in cytotoxic T lymphocytes. (2016) (18)
- A review of databases predicting the effects of SNPs in miRNA genes or miRNA-binding sites (2019) (17)
- Deep characterization of blood cell miRNomes by NGS (2016) (17)
- miRNAs in Ancient Tissue Specimens of the Tyrolean Iceman (2016) (17)
- Micro-RNA 150-5p predicts overt heart failure in patients with univentricular hearts (2019) (16)
- Differential expression of microRNAs following cardiopulmonary bypass in children with congenital heart diseases (2017) (16)
- RNA splicing regulated by RBFOX1 is essential for cardiac function in zebrafish (2015) (16)
- MicroRNA signature in spermatozoa and seminal plasma of proven fertile men and in testicular tissue of men with obstructive azoospermia (2019) (16)
- Genome-Wide Gene Amplification during Differentiation of Neural Progenitor Cells In Vitro (2012) (16)
- Effects of Resistant Starch on Symptoms, Fecal Markers, and Gut Microbiota in Parkinson’s Disease — The RESISTA-PD Trial (2021) (15)
- Abnormal neovascular and proliferative conjunctival phenotype in limbal stem cell deficiency is associated with altered microRNA and gene expression modulated by PAX6 mutational status in congenital aniridia. (2020) (15)
- Integrated quantitative proteomic and transcriptomic analysis of lung tumor and control tissue: a lung cancer showcase (2016) (15)
- IMOTA: an interactive multi-omics tissue atlas for the analysis of human miRNA–target interactions (2017) (15)
- A set of specific miRNAs is connected with murine and human gastric cancer (2013) (15)
- Comparison of initial oral microbiomes of young adults with and without cavitated dentin caries lesions using an in situ biofilm model (2018) (14)
- RegulatorTrail: a web service for the identification of key transcriptional regulators (2017) (14)
- Technical Stability and Biological Variability in MicroRNAs from Dried Blood Spots: A Lung Cancer Therapy-Monitoring Showcase. (2017) (14)
- A 13‐nation population survey of upper gastrointestinal symptoms: prevalence of symptoms and socioeconomic factors (2011) (14)
- Contemporary scientometric analyses using a novel web application: the science performance evaluation (SciPE) approach (2019) (14)
- Micro-RNA signatures in monozygotic twins discordant for congenital heart defects (2019) (14)
- Double-Stranded Ligation Assay for the Rapid Multiplex Quantification of MicroRNAs. (2015) (14)
- Energy Metabolites as Biomarkers in Ischemic and Dilated Cardiomyopathy (2021) (13)
- BALL-SNP: combining genetic and structural information to identify candidate non-synonymous single nucleotide polymorphisms (2015) (13)
- Gene amplification during differentiation of mammalian neural stem cells in vitro and in vivo (2015) (13)
- Combination of Autoantibody Signature with PSA Level Enables a Highly Accurate Blood-Based Differentiation of Prostate Cancer Patients from Patients with Benign Prostatic Hyperplasia (2015) (13)
- Spring is in the air: seasonal profiles indicate vernal change of miRNA activity (2019) (12)
- Systematic Assessment of Blood-Borne MicroRNAs Highlights Molecular Profiles of Endurance Sport and Carbohydrate Uptake (2019) (12)
- Characterization of micro-RNA Profile in the Blood of Patients with Marfan's Syndrome (2017) (12)
- MicroRNA Response of Primary Human Macrophages to Arcobacter Butzleri Infection (2016) (12)
- Myasthenia Gravis: Analysis of Serum Autoantibody Reactivities to 1827 Potential Human Autoantigens by Protein Macroarrays (2013) (12)
- NetworkTrail - a web service for identifying and visualizing deregulated subnetworks (2013) (12)
- A 10‐year prediagnostic follow‐up study shows that serum RNA signals are highly dynamic in lung carcinogenesis (2019) (12)
- Wrinkle in the plan: miR-34a-5p impacts chemokine signaling by modulating CXCL10/CXCL11/CXCR3-axis in CD4+, CD8+ T cells, and M1 macrophages (2020) (12)
- PLSDB: advancing a comprehensive database of bacterial plasmids (2021) (12)
- MicroRNA profiling from dried blood samples (2019) (11)
- The deterministic role of 5-mers in microRNA-gene targeting (2018) (11)
- GAS41 amplification results in overexpression of a new spindle pole protein (2012) (11)
- On the lifetime of bioinformatics web services (2020) (11)
- Quantitative and time-resolved miRNA pattern of early human T cell activation (2020) (11)
- Deep learning-based detection of eosinophilic esophagitis (2021) (11)
- Research in Atrial Fibrillation: A Scientometric Analysis Using the Novel Web Application SciPE. (2020) (10)
- Pathogenicity prediction of non-synonymous single nucleotide variants in dilated cardiomyopathy (2015) (10)
- Is there a general autoantibody signature for cancer? (2012) (10)
- The Role of Quality Control in Targeted Next-generation Sequencing Library Preparation (2016) (10)
- Regulatory MicroRNA Networks: Complex Patterns of Target Pathways for Disease-related and Housekeeping MicroRNAs (2015) (10)
- Induction of the Endoplasmic-Reticulum-Stress Response: MicroRNA-34a Targeting of the IRE1α-Branch (2020) (10)
- Epstein-Barr Virus Infection of Cell Lines Derived from Diffuse Large B-Cell Lymphomas Alters MicroRNA Loading of the Ago2 Complex (2018) (10)
- miFRame: analysis and visualization of miRNA sequencing data in neurological disorders (2015) (10)
- DynaVenn: web-based computation of the most significant overlap between ordered sets (2019) (10)
- DrugTargetInspector: An assistance tool for patient treatment stratification (2016) (10)
- RNA sequencing of whole blood reveals early alterations in immune cells and gene expression in Parkinson’s disease (2021) (9)
- From Medical Images to Fast Computational Models of Heart Electromechanics: An Integrated Framework towards Clinical Use (2013) (9)
- MicroRNA‐targeting in spermatogenesis: Over‐expressions of microRNA‐23a/b‐3p and its affected targeting of the genes ODF2 and UBQLN3 in spermatozoa of patients with oligoasthenozoospermia (2021) (9)
- Paired proteomics, transcriptomics and miRNomics in non-small cell lung cancers: known and novel signaling cascades (2016) (9)
- Improving mapping and SNP-calling performance in multiplexed targeted next-generation sequencing (2012) (9)
- Micro-RNA–Regulated Proangiogenic Signaling in Arteriovenous Loops in Patients with Combined Vascular and Soft-Tissue Reconstructions: Revisiting the Nutrient Flap Concept (2018) (9)
- Profound differences of microRNA expression patterns in hepatocytes and hepatoma cell lines commonly used in hepatitis C virus studies (2011) (9)
- ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification (2019) (9)
- Insights from circulating microRNAs in cardiovascular entities in turner syndrome patients (2020) (9)
- miRMaster 2.0: multi-species non-coding RNA sequencing analyses at scale (2021) (8)
- Insights into Male Androgenetic Alopecia: Differential Gene Expression Profiling of Plucked Hair Follicles and Integration with Genetic Data. (2019) (8)
- Altered miRNA expression patterns in Tff2 knock-out mice correlate with cellular pathways of neoplastic development and caloric metabolism (2012) (8)
- Combining gene expression signatures and autoantibody profiles in human meningioma (2009) (8)
- Competitive learning suggests circulating miRNA profiles for cancers decades prior to diagnosis (2020) (8)
- Specific amplifications and copy number decreases during human neural stem cells differentiation towards astrocytes, neurons and oligodendrocytes (2017) (8)
- Epigenetic Regulation of Alternative mRNA Splicing in Dilated Cardiomyopathy (2020) (8)
- Research Output and International Cooperation Among Countries During the COVID-19 Pandemic: Scientometric Analysis (2020) (8)
- Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11,087 Clinical Isolates (2018) (8)
- The sncRNA Zoo: a repository for circulating small noncoding RNAs in animals (2019) (8)
- Transcriptomic Analysis of Intestinal Tissues from Two 90-Day Feeding Studies in Rats Using Genetically Modified MON810 Maize Varieties (2017) (8)
- Next Generation Sequencing Analysis of Total Small Noncoding RNAs from Low Input RNA from Dried Blood Sampling. (2018) (8)
- Exploring ncRNAs in Alzheimer’s disease by miRMaster (2016) (8)
- Clinical Resistome Screening of 1,110 Escherichia coli Isolates Efficiently Recovers Diagnostically Relevant Antibiotic Resistance Biomarkers and Potential Novel Resistance Mechanisms (2019) (7)
- REGGAE: a novel approach for the identification of key transcriptional regulators (2018) (7)
- MicroRNA-29b/c-3p Indicate Advanced Liver Fibrosis/Cirrhosis in Univentricular Heart Patients With and Without Fontan Palliation (2020) (7)
- new insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome (2012) (7)
- Reanalysis of 3,707 novel human microRNA candidates (2015) (7)
- Characterization of micro-RNA in women with different ovarian reserve (2021) (7)
- Altered miRNA-profile dependent on ART outcome in early pregnancy targets Wnt-pathway. (2017) (7)
- MiR-148a impairs Ras/ERK signaling in B lymphocytes by targeting SOS proteins. (2017) (7)
- CoolMPS for robust sequencing of single-nuclear RNAs captured by droplet-based method (2020) (7)
- Autoantibody Signature Differentiates Wilms Tumor Patients from Neuroblastoma Patients (2011) (7)
- Gene amplification in mesenchymal stem cells and during differentiation towards adipocytes or osteoblasts (2017) (7)
- SePaCS—a web-based application for classification of seroreactivity profiles (2007) (6)
- Secretion and Immunogenicity of the Meningioma-Associated Antigen TXNDC16 (2014) (6)
- microRNA neural networks improve diagnosis of acute coronary syndrome (ACS). (2020) (5)
- Undulating changes in human plasma proteome across lifespan are linked to disease (2019) (5)
- Pathway-based variant enrichment analysis on the example of dilated cardiomyopathy (2015) (5)
- Comparing genome versus proteome-based identification of clinical bacterial isolates (2016) (5)
- A multivariable miRNA signature delineates the systemic hemodynamic impact of arteriovenous shunt placement in a pilot study (2020) (4)
- Thin-layer chromatographic determination of procainamide and N-acetylprocainamide in human serum and urine at single-dose levels. (1983) (4)
- SARS-CoV-2 and COVID-19: a scientometric analysis of research output and international cooperation. (2020) (4)
- Research Output and International Cooperation Among Countries During the COVID-19 Pandemic: Scientometric Analysis (Preprint) (2020) (4)
- Large-scale validation of miRNAs by disease association, evolutionary conservation and pathway activity (2019) (4)
- An 80,000-Piece Puzzle of Alzheimer's Disease. (2019) (4)
- Thin-layer chromatographic determination of imipramine and desipramine in human plasma and urine at single-dose levels. (1983) (4)
- From Single Variants to Protein Cascades (2015) (4)
- Tracheobronchoscopy and esophagoscopy in current ear–nose–throat practice: an update (2010) (4)
- The role of TCF3 as potential master regulator in blastemal Wilms tumors (2018) (4)
- Multicenter study identified molecular blood‐born protein signatures for Wilms Tumor (2012) (4)
- Small ncRNA-Seq Results of Human Tissues: Variations Depending on Sample Integrity. (2018) (4)
- MiR-34 a-3 p alters proliferation and apoptosis of meningioma cells in vitro and is directly targeting SMAD 4 , FRAT 1 and BCL 2 (2017) (4)
- CoolMPS: evaluation of antibody labeling based massively parallel non-coding RNA sequencing (2020) (3)
- Systematic Cross-biospecimen Evaluation of DNA Extraction Kits for Long- and Short-read Multi-metagenomic Sequencing Studies (2022) (3)
- HumiR: Web Services, Tools and Databases for Exploring Human microRNA Data (2020) (3)
- Differential degradation of RNA species by autophagy related pathways in plants (2019) (3)
- sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms (2022) (3)
- Comparative Analysis of Biochemical Biases by Ligation- and Template-Switch-Based Small RNA Library Preparation Protocols. (2019) (3)
- Prospect and challenge of detecting dynamic gene copy number increases in stem cells by whole genome sequencing (2019) (2)
- Profiling microRNA expression in murine bone healing and non-union formation: Role of miR-140 during the early stage of bone healing (2019) (2)
- Computational Cardiology — A New Discipline of Translational Research (2016) (2)
- Deep sncRNA-seq of the PPMI cohort to study Parkinson’s disease progression (2020) (2)
- Encyclopedia of tools for the analysis of miRNA isoforms. (2020) (2)
- Marathon-Induced Cardiac Strain as Model for the Evaluation of Diagnostic microRNAs for Acute Myocardial Infarction (2021) (2)
- Limited Long-Term Impact of Insect Venom Immunotherapy on the Micro-RNA Landscape in Whole Blood. (2019) (2)
- Micro-ribonucleic acids and extracellular vesicles repertoire in the spent culture media is altered in women undergoing In Vitro Fertilization (2017) (2)
- Sex Differences in Cardiovascular Research: A Scientometric Analysis (2021) (2)
- Abstract 17517: Genetics of Left Ventricular Noncompaction Cardiomyopathy (2014) (1)
- The blood-borne miRNA signature of lung cancer patients is independent of histology but influenced by metastases (2014) (1)
- Genome-wide copy number profiling of mouse neural stem cells during differentiation (2015) (1)
- Nucleic Acids as Molecular Diagnostics (2014) (1)
- Systematic permutation testing in GWAS pathway analyses: identification of genetic networks in dilated cardiomyopathy and ulcerative colitis (2014) (1)
- BusyBee Web: towards comprehensive and differential composition-based metagenomic binning (2022) (1)
- Sex differences in cardiovascular research (2021) (1)
- A blood based 12-miRNA signature of Alzheimer disease patients (2013) (1)
- Risk prediction with office and ambulatory blood pressure using artificial intelligence (2020) (1)
- OMICS AND PROGNSTIC MARKERS (2013) (1)
- miR-34a: a new player in the regulation of T cell function by modulation of NF-κB signaling (2019) (1)
- The pulmonary microbiome in sarcoidosis is similar to other parenchymal lung diseases (2018) (1)
- Treatment-independent miRNA signature in blood of wilms tumor patients (2012) (1)
- Controlling my genome with my smartphone: first clinical experiences of the PROMISE system (2021) (1)
- Genome-wide copy number profiling to detect gene amplifications in neural progenitor cells (2014) (1)
- Identification of miR-34 a-target interactions by a combined network based and experimental approach (2016) (1)
- [The role of the gut microbiome in idiopathic Parkinson's disease]. (2020) (1)
- GENOME-WIDE MICRORNA AND MRNA EXPRESSION PATTERN IN ALZHEIMER’S DISEASE (2017) (1)
- The human miRNA repertoire of different blood compounds (2014) (1)
- LitDB - Keeping Track of Research Papers From Your Institute Made Simple (2017) (1)
- Erratum to: miRNAs and sports: tracking training status and potentially confounding diagnoses (2016) (1)
- A Temporary Pause in the Replication Licensing Restriction Leads to Rereplication during Early Human Cell Differentiation (2022) (1)
- Outside the limit: questioning the distance restrictions for cooperative miRNA binding sites (2023) (0)
- 4925Genomic structural variations analysis in dilated cardiomyopathy detects cardiac dysregulation of important RNA species (2018) (0)
- System for regulating body temperature with reduction of citration (2000) (0)
- GeneTrail: A Framework for the Analysis of High-Throughput Profiles (2021) (0)
- Large-scale antibody profiling of human blood sera: The future of molecular diagnosis (2009) (0)
- Cover Picture: Evidence for the Mode of Action of the Highly Cytotoxic Streptomyces Polyketide Kendomycin (ChemBioChem 11/2007) (2007) (0)
- Deep characterization of blood cell miRNomes by NGS (2016) (0)
- Circulating small non-coding RNAs associated with age, sex, smoking, body mass and physical activity (2018) (0)
- On Epigenomic Privacy : Tracking Personal MicroRNA Expression Profiles over Time ( Extended Abstract ) (2016) (0)
- Modulation of intracellular calcium signaling by microRNA-34a-5p (2018) (0)
- Abstract 524: Impact of age, sex, smoking, body mass and physical activity on circulating small non-coding RNA expression profiles (2018) (0)
- This information is current as Meningioma-Associated Antigen TXNDC 16 Secretion and Immunogenicity of the Eckart (2014) (0)
- Differential expression of microRNAs following cardiopulmonary bypass in children with congenital heart diseases (2017) (0)
- miR-34a-5p as molecular hub of pathomechanisms in Huntington’s disease (2023) (0)
- MiR-148a impairs Ras/ERK signaling in B lymphocytes by targeting SOS proteins (2017) (0)
- Gene Set Enrichment Analysis Suggests That Increased Rituximab-Mediated NK Cell Cytotoxicity after Vitamin D Substitution Is Driven By Upregulation of Interferon Alpha (IFN-a) Isoforms (2018) (0)
- Paleoproteomic study of the Iceman’s brain tissue (2013) (0)
- Erratum to: miRNAs and sports: tracking training status and potentially confounding diagnoses (2016) (0)
- Bias in recent miRBase annotations potentially associated with RNA quality issues (2017) (0)
- Comparison of Software Tools for microRNA Next Generation Sequencing Data Analysis (2016) (0)
- Atherosclerosis in ancient mummified human remains: Linking genetic predisposition with the occurrence of calcified plaques (2015) (0)
- Time-resolved RNA signatures of CD4+ T cells in Parkinson’s disease (2023) (0)
- Pathway-based variant enrichment analysis on the example of dilated cardiomyopathy (2015) (0)
- Analysis of circulating microRNAs in patients with repaired Tetralogy of Fallot with and without heart failure (2017) (0)
- Multi-omics assessment of dilated cardiomyopathy using non-negative matrix factorization (2022) (0)
- Meningioma-Associated Antigen TXNDC16 Secretion and Immunogenicity of the (0)
- Characterization of microRNA Profile in the Blood of Patients with Marfan Syndrome (2017) (0)
- Evaluation of microRNAs by molecular imaging for novel diagnostics and therapeutics (2014) (0)
- MicroRNA-regulated pathways of flow-stimulated angiogenesis and vascular remodeling in vivo (2019) (0)
- Untargeted metabolomics by high resolution mass spectrometry coupled to normal and reversed phase liquid chromatography as a tool to study the in vitro biotransformation of new psychoactive substances (2019) (0)
- MicroRNA in diagnosis and therapy monitoring of early-stage triple-negative breast cancer (2018) (0)
- Up-Regulation of Angiopoetic Signaling and Markers of Cardiopathy after Arteriovenous Loop Placement in Patients with Microsurgical Lower Extremity Reconstructions (2019) (0)
- 970 A 13-Nation Population Survey of Upper Gastrointestinal Symptoms: Age and Gender (2009) (0)
- A system for controlling body temperature by reduction of the jitter (2000) (0)
- An apparatus for compensating for time-varying magnetic fields in feldstoerungen (1986) (0)
- The Influence of Socioeconomic Status on the Prevalence of Upper Gastrointestinal Symptoms: A 13-Nation Population Survey (2011) (0)
- miRNAs and sports: tracking training status and potentially confounding diagnoses (2016) (0)
- Comparison of initial oral microbiomes of young adults with and without cavitated dentin caries lesions using an in situ biofilm model (2018) (0)
- This Provisional PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully formatted PDF and full text (HTML) versions will be made available soon. (2006) (0)
- Specific miRNA Disease Biomarkers in Blood, Serum and Plasma: Challenges and Prospects (2016) (0)
- Xenogeneic Skin Transplantation Promotes Angiogenesis and Tissue Regeneration Through Vitamin D-Activated Trem2+ Macrophages (2021) (0)
- Cas9-Mediated Knockout of Ndrg2 Enhances the Regenerative Potential of Dendritic Cells for Wound Healing (2022) (0)
- The Genetic Background of Atherosclerosis in Ancient Mummies (2015) (0)
- GeneTrail2: a web server for the statistical analysis of molecular signatures (2014) (0)
- Contents Vol. 61, 2015 (2015) (0)
- Genetic and functional data identify PRDM1 and NPD52 as susceptibility factors in Crohn's disease (2013) (0)
- From Single Variants to Protein Cascades MULTISCALE MODELING OF SINGLE NUCLEOTIDE VARIANT SETS IN GENETIC DISORDERS (2016) (0)
- Abstract 105: Upregulation of Proangiogenic miRNAs and Genes from the EGF Receptor and Angiopoietin Families in Arteriovenous Loops in Patients with Microsurgical Lower Extremity Reconstruction (2017) (0)
- Prospect and challenge of detecting dynamic gene copy number increases in stem cells by whole genome sequencing (2019) (0)
- Featured Article Validating Alzheimer's disease micro RNAs using next-generation sequencing (2016) (0)
- Abstract 13.55 HOW DO ARTERIOVENOUS LOOPS INDUCE ANGIOGENESIS? FLOW-DEPENDENT ALTERATIONS OF MIRNA- AND GENE EXPRESSION PROFILES IN A RAT AV LOOP MODEL (2018) (0)
- Statistical biases due to anonymization evaluated in an open clinical dataset from COVID-19 patients (2022) (0)
- Proteome Analysis of Tumor Samples: First Dimension Intact Protein Separation Followed by Shotgun Identification (2008) (0)
- Deregulated microRNA and mRNA expression profiles in the peripheral blood of patients with Marfan syndrome (2018) (0)
- BALL-SNPgp - from genetic variants toward computational diagnostics (2016) (0)
- cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs (2016) (0)
- miFRame: analysis and visualization of miRNA sequencing data in neurological disorders (2015) (0)
- Next-generation sequencing identifies altered whole blood microRNAs in neuromyelitis optica spectrum disorder which may permit discrimination from multiple sclerosis (2015) (0)
- Ischemic Stroke–A Scientometric Analysis (2022) (0)
- Quantification of collateral artery growth by automated fluorescent microsphere perfusion. (2012) (0)
- Abstract 18382: Rna Splicing Regulated by A2bp1 is Essential for Cardiac Function in Zebrafish (2014) (0)
- BALL-SNP: combining genetic and structural information to identify candidate non-synonymous single nucleotide polymorphisms (2015) (0)
- MicroRNA In Vitro Diagnostics by Use of Immunoassay Analyzers (2015) (0)
- The Effect of a Planetary Health Diet on the Human Gut Microbiome: A Descriptive Analysis (2023) (0)
- Figures S 1S 9 Improving mapping and SNP-calling performance in multiplexed targeted next-generation sequencing (2012) (0)
- Vesicle-bound regulatory RNAs are associated with tissue aging (2021) (0)
- DOP27 Sequencing-based hematopoietic miRNA landscape reveals common and distinct features of autoimmune inflammatory phenotypes (2019) (0)
- The microRNA Mosaic: Comprehensive miRNA Profiling of Human Diseases (2010) (0)
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