Andrej Šali
#30,233
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American biologist
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Andrej Šalibiology Degrees
Biology
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#2490
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Computational Biology
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#14
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Molecular Biology
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#136
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Biology
Andrej Šali's Degrees
- PhD Biophysics University of California, Berkeley
- Bachelors Physics University of California, Berkeley
Why Is Andrej Šali Influential?
(Suggest an Edit or Addition)According to Wikipedia, Andrej Šali is a computational structural biologist. Since 2003, he has been Professor in the Department of Bioengineering and Therapeutic Sciences at University of California, San Francisco. He also serves as an editor of the journal Structure.
Andrej Šali's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Comparative protein modelling by satisfaction of spatial restraints. (1993) (12038)
- Comparative Protein Structure Modeling Using MODELLER (2016) (3701)
- Comparative protein structure modeling of genes and genomes. (2002) (3078)
- A SARS-CoV-2 Protein Interaction Map Reveals Targets for Drug-Repurposing (2020) (3012)
- Comparative Protein Structure Modeling Using Modeller (2006) (2197)
- Statistical potential for assessment and prediction of protein structures (2006) (2152)
- Comparative Protein Structure Modeling Using MODELLER (2007) (2043)
- Modeling of loops in protein structures (2000) (1921)
- Protein structure modeling with MODELLER. (2008) (1649)
- Protein Structure Prediction and Structural Genomics (2001) (1586)
- Modeller: generation and refinement of homology-based protein structure models. (2003) (1517)
- Evaluation of comparative protein modeling by MODELLER (1995) (1090)
- The molecular architecture of the nuclear pore complex (2007) (1030)
- Comparative Protein Structure Modeling Using MODELLER (2014) (841)
- Comparative protein modeling by satisfaction of spatial restraints. (1996) (818)
- ModLoop: automated modeling of loops in protein structures (2003) (691)
- Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters (2014) (677)
- MODBASE: a database of annotated comparative protein structure models and associated resources (2005) (672)
- Protein Folding: A Perspective from Theory and Experiment. (1998) (666)
- Global landscape of HIV–human protein complexes (2011) (645)
- RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences (2020) (622)
- Determining the architectures of macromolecular assemblies (2007) (550)
- Protein production and purification (2008) (529)
- Structure of the 80S Ribosome from Saccharomyces cerevisiae—tRNA-Ribosome and Subunit-Subunit Interactions (2001) (519)
- Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming. (1990) (516)
- Kinetics of protein folding. A lattice model study of the requirements for folding to the native state. (1994) (500)
- UCSF Chimera, MODELLER, and IMP: an integrated modeling system. (2012) (495)
- FoXS: a web server for rapid computation and fitting of SAXS profiles (2010) (483)
- Understanding protein folding via free-energy surfaces from theory and experiment. (2000) (476)
- The molecular sociology of the cell (2007) (475)
- Tools for comparative protein structure modeling and analysis (2003) (471)
- A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing (2020) (456)
- From words to literature in structural proteomics (2003) (456)
- Putting the Pieces Together: Integrative Modeling Platform Software for Structure Determination of Macromolecular Assemblies (2012) (455)
- Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms (2020) (444)
- Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach (2012) (432)
- Accurate SAXS profile computation and its assessment by contrast variation experiments. (2013) (429)
- Outcome of the First Electron Microscopy Validation Task Force Meeting (2012) (422)
- Global Sequencing of Proteolytic Cleavage Sites in Apoptosis by Specific Labeling of Protein N Termini (2008) (417)
- Architecture of the Protein-Conducting Channel Associated with the Translating 80S Ribosome (2001) (403)
- Components of Coated Vesicles and Nuclear Pore Complexes Share a Common Molecular Architecture (2004) (402)
- Structural genomics: beyond the Human Genome Project (1999) (375)
- Large-scale protein structure modeling of the Saccharomyces cerevisiae genome. (1998) (374)
- Statistical potentials for fold assessment (2002) (368)
- Integrative Structure and Functional Anatomy of a Nuclear Pore Complex (2018) (350)
- Advances in comparative protein-structure modelling. (1997) (343)
- Comparative protein structure modeling by iterative alignment, model building and model assessment. (2003) (336)
- Protein structure fitting and refinement guided by cryo-EM density. (2008) (336)
- ModBase, a database of annotated comparative protein structure models and associated resources (2013) (328)
- FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles (2016) (327)
- Vif hijacks CBF-β to degrade APOBEC3G and promote HIV-1 infection (2011) (327)
- Global Identification and Characterization of Both O-GlcNAcylation and Phosphorylation at the Murine Synapse* (2012) (326)
- Environment‐specific amino acid substitution tables: Tertiary templates and prediction of protein folds (1992) (309)
- Derivation of rules for comparative protein modeling from a database of protein structure alignments (1994) (302)
- lynx1, an Endogenous Toxin-like Modulator of Nicotinic Acetylcholine Receptors in the Mammalian CNS (1999) (299)
- Simple fold composition and modular architecture of the nuclear pore complex (2006) (296)
- Study of the Structural Dynamics of the E. coli 70S Ribosome Using Real-Space Refinement (2003) (291)
- Comparative protein structure modeling. Introduction and practical examples with modeller. (2000) (289)
- Genomic-scale prioritization of drug targets: the TDR Targets database (2008) (288)
- Ligand Discovery from a Dopamine D3 Receptor Homology Model and Crystal Structure (2011) (285)
- Simple rules for passive diffusion through the nuclear pore complex (2016) (281)
- Comparative Protein Structure Modeling Using MODELLER (2016) (272)
- A structural perspective on protein-protein interactions. (2004) (267)
- Design of a single-chain polypeptide tetrahedron assembled from coiled-coil segments (2013) (262)
- Evaluation of comparative protein structure modeling by MODELLER‐3 (1997) (262)
- Protein Structure Modeling with MODELLER. (2017) (244)
- Structural basis for the specific interaction of lysine-containing proline-rich peptides with the N-terminal SH3 domain of c-Crk. (1995) (238)
- Crystal Structure of the δ′ Subunit of the Clamp-Loader Complex of E. coli DNA Polymerase III (1997) (236)
- Theoretical studies of protein folding and unfolding. (1995) (229)
- LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources (2005) (227)
- Evidence for a Shared Nuclear Pore Complex Architecture That Is Conserved from the Last Common Eukaryotic Ancestor* (2009) (226)
- Nuclear Import Receptor Inhibits Phase Separation of FUS through Binding to Multiple Sites (2018) (223)
- Protein structure modeling for structural genomics (2000) (223)
- Integrating diverse data for structure determination of macromolecular assemblies. (2008) (222)
- Tertiary structural constraints on protein evolutionary diversity: templates, key residues and structure prediction (1990) (219)
- 100,000 protein structures for the biologist (1998) (214)
- EVA: continuous automatic evaluation of protein structure prediction servers (2001) (214)
- Crystal Structure of a GCN5-Related N-acetyltransferase Serratia marcescens Aminoglycoside 3-N-acetyltransferase (1998) (209)
- Alignment of protein sequences by their profiles (2004) (206)
- Protein structure modeling with MODELLER. (2014) (203)
- Crystal structure of a eukaryotic phosphate transporter (2013) (201)
- MODBASE, a database of annotated comparative protein structure models (2002) (197)
- EVA: evaluation of protein structure prediction servers (2003) (192)
- Function of human Rh based on structure of RhCG at 2.1 Å (2010) (189)
- Ligand Specificity of Brain Lipid-binding Protein* (1996) (188)
- Role of organic cation transporter 3 (SLC22A3) and its missense variants in the pharmacologic action of metformin (2010) (183)
- Integrative Structural Biology (2013) (177)
- PIBASE: a comprehensive database of structurally defined protein interfaces (2005) (174)
- A composite score for predicting errors in protein structure models (2006) (173)
- Molecular Architecture of the 40S⋅eIF1⋅eIF3 Translation Initiation Complex (2014) (170)
- Comprehensive molecular structure of the eukaryotic ribosome. (2009) (169)
- Structural genomics: A pipeline for providing structures for the biologist (2002) (169)
- The Enzyme Function Initiative. (2011) (167)
- Gene expression profiling of the human maternal-fetal interface reveals dramatic changes between midgestation and term. (2007) (164)
- Site-directed mutagenesis of recombinant human beta 2-glycoprotein I identifies a cluster of lysine residues that are critical for phospholipid binding and anti-cardiolipin antibody activity. (1996) (164)
- Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. (2015) (163)
- 2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update (2017) (157)
- Modeling mutations and homologous proteins. (1995) (155)
- Use of Single Point Mutations in Domain I of β2-Glycoprotein I to Determine Fine Antigenic Specificity of Antiphospholipid Autoantibodies1 (2002) (152)
- Multiple conformations of E. coli Hsp90 in solution: insights into the conformational dynamics of Hsp90. (2008) (152)
- Structure-based model of allostery predicts coupling between distant sites (2012) (151)
- Structure-based ligand discovery for the Large-neutral Amino Acid Transporter 1, LAT-1 (2013) (148)
- A Systematic Computational Analysis of Biosynthetic Gene Cluster Evolution: Lessons for Engineering Biosynthesis (2014) (148)
- The proteasomal subunit Rpn6 is a molecular clamp holding the core and regulatory subcomplexes together (2011) (147)
- Principles for Integrative Structural Biology Studies (2019) (145)
- Structural Characterization by Cross-linking Reveals the Detailed Architecture of a Coatomer-related Heptameric Module from the Nuclear Pore Complex* (2014) (145)
- Structural genomics of protein phosphatases (2007) (144)
- Evolution of modular intraflagellar transport from a coatomer-like progenitor (2013) (144)
- From comparisons of protein sequences and structures to protein modelling and design. (1990) (143)
- How well can the accuracy of comparative protein structure models be predicted? (2008) (143)
- Structure of the mammalian 80S ribosome at 8.7 A resolution. (2008) (143)
- Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform (2016) (139)
- Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies. (2008) (139)
- Packaging of Proteases and Proteoglycans in the Granules of Mast Cells and Other Hematopoietic Cells (1995) (135)
- Finding Cures for Tropical Diseases: Is Open Source an Answer? (2004) (134)
- CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites. (2016) (134)
- FLT3 D835 Mutations Confer Differential Resistance to Type II FLT3 Inhibitors (2015) (134)
- Three-dimensional models of four mouse mast cell chymases. Identification of proteoglycan binding regions and protease-specific antigenic epitopes. (1993) (130)
- Inferential optimization for simultaneous fitting of multiple components into a CryoEM map of their assembly. (2009) (129)
- Host–pathogen protein interactions predicted by comparative modeling (2007) (129)
- Outcome of a workshop on applications of protein models in biomedical research. (2009) (129)
- Filamentous phage assembly: variation on a protein export theme. (1997) (128)
- Molecular architecture of the yeast Mediator complex (2015) (128)
- Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment (2016) (126)
- Molecular Docking Screens Using Comparative Models of Proteins (2009) (124)
- Insights into the molecular architecture of the 26S proteasome (2009) (124)
- Determination of cancer risk associated with germ line BRCA1 missense variants by functional analysis. (2007) (123)
- Subnanometer-resolution electron cryomicroscopy-based domain models for the cytoplasmic region of skeletal muscle RyR channel (2008) (121)
- The Tryptase, Mouse Mast Cell Protease 7, Exhibits Anticoagulant Activity in Vivo and in Vitro Due to Its Ability to Degrade Fibrinogen in the Presence of the Diverse Array of Protease Inhibitors in Plasma* (1997) (120)
- A Conserved Coatomer-related Complex Containing Sec13 and Seh1 Dynamically Associates With the Vacuole in Saccharomyces cerevisiae* (2011) (119)
- A strategy for dissecting the architectures of native macromolecular assemblies (2015) (118)
- Protein Folding: A Perspective from Theory and Experiment (1998) (117)
- Discovery of potent, selective multidrug and toxin extrusion transporter 1 (MATE1, SLC47A1) inhibitors through prescription drug profiling and computational modeling. (2013) (117)
- Structure–function mapping of a heptameric module in the nuclear pore complex (2012) (113)
- Reliability of assessment of protein structure prediction methods. (2002) (113)
- Structure-based discovery of prescription drugs that interact with the norepinephrine transporter, NET (2011) (112)
- RasGRP4, a New Mast Cell-restricted Ras Guanine Nucleotide-releasing Protein with Calcium- and Diacylglycerol-binding Motifs (2002) (110)
- Identification of a New Member of the Tryptase Family of Mouse and Human Mast Cell Proteases Which Possesses a Novel COOH-terminal Hydrophobic Extension* (1999) (110)
- Refinement of protein structures by iterative comparative modeling and CryoEM density fitting. (2006) (110)
- Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis (2001) (110)
- Evolution and physics in comparative protein structure modeling. (2002) (109)
- Optimized atomic statistical potentials: assessment of protein interfaces and loops (2013) (108)
- Cys-scanning disulfide crosslinking and bayesian modeling probe the transmembrane signaling mechanism of the histidine kinase, PhoQ. (2014) (107)
- Fold assessment for comparative protein structure modeling (2007) (107)
- Recovering a representative conformational ensemble from underdetermined macromolecular structural data. (2013) (107)
- Comparison of human solute carriers (2010) (107)
- Direct observation by X‐ray analysis of the tetrahedral “intermediate” of aspartic proteinases (1992) (106)
- Immunoglobulin motif DNA recognition and heterodimerization of the PEBP2/CBF Runt domain (2000) (106)
- Structure-Based Assessment of Missense Mutations in Human BRCA1 (2004) (104)
- Comparative Protein Structure Modeling and its Applications to Drug Discovery (2004) (104)
- Ring closure activates yeast γTuRC for species-specific microtubule nucleation (2014) (102)
- Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy. (2005) (100)
- Molecular Architecture of the 40S⋅eIF1⋅eIF3 Translation Initiation Complex (2014) (99)
- Crystal structure of the delta' subunit of the clamp-loader complex of E. coli DNA polymerase III. (1997) (94)
- Domain flexibility in aspartic proteinases (1992) (91)
- The folding mechanism of larger model proteins: role of native structure. (1996) (91)
- Macromolecular docking restrained by a small angle X-ray scattering profile. (2011) (91)
- Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH. (2015) (90)
- Fate of two mast cell tryptases in V3 mastocytosis and normal BALB/c mice undergoing passive systemic anaphylaxis: prolonged retention of exocytosed mMCP-6 in connective tissues, and rapid accumulation of enzymatically active mMCP-7 in the blood (1996) (90)
- A variable gap penalty function and feature weights for protein 3-D structure comparisons. (1992) (90)
- Alignment of multiple protein structures based on sequence and structure features. (2009) (90)
- Integrative structural modeling with small angle X-ray scattering profiles (2012) (89)
- Mechanism of lid closure in the eukaryotic chaperonin TRiC/CCT (2008) (88)
- Facile backbone structure determination of human membrane proteins by NMR spectroscopy (2012) (87)
- Current insights into the "antiphospholipid" syndrome: clinical, immunological, and molecular aspects. (1998) (86)
- Modeling mutations in protein structures (2007) (85)
- A phosphotyrosine switch regulates organic cation transporters (2016) (85)
- High-resolution network biology: connecting sequence with function (2013) (84)
- The C-type lectin fold as an evolutionary solution for massive sequence variation (2005) (84)
- X-ray analyses of aspartic proteinases. III Three-dimensional structure of endothiapepsin complexed with a transition-state isostere inhibitor of renin at 1.6 A resolution. (1990) (84)
- Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain. (2018) (82)
- Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome* (2017) (81)
- A method for integrative structure determination of protein-protein complexes (2012) (80)
- Uncertainty in integrative structural modeling. (2014) (80)
- Structural Basis for Alternating Access of a Eukaryotic Calcium/Proton Exchanger (2013) (80)
- SLC Classification: An Update (2013) (78)
- The structural dynamics of macromolecular processes. (2009) (77)
- Molecular modeling and ligand docking for solute carrier (SLC) transporters. (2013) (77)
- Regulation and Function of Mast Cell Proteases in Inflammation (1998) (76)
- Crystal structures of ribosome anti-association factor IF6 (2000) (76)
- Slide-and-exchange mechanism for rapid and selective transport through the nuclear pore complex (2016) (75)
- PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models. (2017) (75)
- Evolutionary constraints on structural similarity in orthologs and paralogs (2009) (75)
- MODBASE, a database of annotated comparative protein structure models, and associated resources. (2004) (75)
- LigBase: a database of families of aligned ligand binding sites in known protein sequences and structures (2002) (75)
- Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules. (2018) (75)
- Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB. (2013) (75)
- Determining macromolecular assembly structures by molecular docking and fitting into an electron density map (2010) (74)
- On a bender—BARs, ESCRTs, COPs, and finally getting your coat (2011) (74)
- Variable gap penalty for protein sequence-structure alignment. (2006) (73)
- SALIGN: a web server for alignment of multiple protein sequences and structures (2012) (73)
- Integrative Structure Modeling of Macromolecular Assemblies from Proteomics Data* (2010) (73)
- All-atom ensemble modeling to analyze small-angle x-ray scattering of glycosylated proteins. (2013) (72)
- Combining electron microscopy and comparative protein structure modeling. (2005) (72)
- The structure of chagasin in complex with a cysteine protease clarifies the binding mode and evolution of an inhibitor family. (2007) (70)
- Mouse Mast Cell Protease 9, a Novel Member of the Chromosome 14 Family of Serine Proteases that is Selectively Expressed in Uterine Mast Cells* (1997) (68)
- Molecular Architecture and Function of the SEA Complex, a Modulator of the TORC1 Pathway* (2014) (68)
- Coordinating the impact of structural genomics on the human α-helical transmembrane proteome (2013) (66)
- Phylogenetic relationships from three-dimensional protein structures. (1990) (66)
- Statistical Potential for Modeling and Ranking of Protein-Ligand Interactions (2011) (65)
- Integrative Structure–Function Mapping of the Nucleoporin Nup133 Suggests a Conserved Mechanism for Membrane Anchoring of the Nuclear Pore Complex* (2014) (64)
- Protein complex compositions predicted by structural similarity (2006) (64)
- High-throughput computational and experimental techniques in structural genomics. (2004) (63)
- Domain Organization of Escherichia coli Transcript Cleavage Factors GreA and GreB* (1997) (62)
- modbase, a database of annotated comparative protein structure models and associated resources (2008) (61)
- The proteasome-interacting Ecm29 protein disassembles the 26S proteasome in response to oxidative stress (2017) (61)
- Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome (2001) (61)
- Functional Impact of Missense Variants in BRCA1 Predicted by Supervised Learning (2006) (61)
- The zebrafish forkhead transcription factor Foxi1 specifies epibranchial placode-derived sensory neurons (2003) (60)
- Temperature dependence of the folding rate in a simple protein model: Search for a “glass” transition (1998) (60)
- Cross-activating c-Met/β1 integrin complex drives metastasis and invasive resistance in cancer (2017) (59)
- DBAli: a database of protein structure alignments (2001) (59)
- Outcome of a workshop on archiving structural models of biological macromolecules. (2006) (59)
- Target Prediction for an Open Access Set of Compounds Active against Mycobacterium tuberculosis (2013) (58)
- Toward an Integrated Structural Model of the 26S Proteasome* (2010) (57)
- Prediction of protease substrates using sequence and structure features (2010) (57)
- Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions (2007) (56)
- An atomic model AAA-ATPase/20S core particle sub-complex of the 26S proteasome. (2009) (56)
- Assessing Exhaustiveness of Stochastic Sampling for Integrative Modeling of Macromolecular Structures. (2017) (56)
- MODELLER: A Program for Protein Structure Modeling (2013) (55)
- The optimal size of a globular protein domain: A simple sphere-packing model (2005) (54)
- Classifying Variants of Undetermined Significance in BRCA2 with Protein Likelihood Ratios (2008) (54)
- Integrative structure modeling with the Integrative Modeling Platform (2018) (54)
- Limits of Ligand Selectivity from Docking to Models: In Silico Screening for A1 Adenosine Receptor Antagonists (2012) (54)
- Tel2 mediates activation and localization of ATM/Tel1 kinase to a double-strand break. (2008) (53)
- Molecular recognition in protein families: a database of aligned three-dimensional structures of related proteins. (1993) (53)
- ModBase, a database of annotated comparative protein structure models, and associated resources (2010) (53)
- Stereochemical Criteria for Prediction of the Effects of Proline Mutations on Protein Stability (2007) (52)
- Immunoproteasome functions explained by divergence in cleavage specificity and regulation (2017) (51)
- Scoring Large‐Scale Affinity Purification Mass Spectrometry Datasets with MiST (2015) (50)
- Minimalist representations and the importance of nearest neighbor effects in protein folding simulations. (2006) (50)
- Comprehensive structure and functional adaptations of the yeast nuclear pore complex (2021) (50)
- Structure of Complement C3(H2O) Revealed By Quantitative Cross-Linking/Mass Spectrometry And Modeling* (2016) (50)
- Selecting optimum eukaryotic integral membrane proteins for structure determination by rapid expression and solubilization screening. (2009) (50)
- New York-Structural GenomiX Research Consortium (NYSGXRC): A Large Scale Center for the Protein Structure Initiative (2005) (50)
- Regulatory Elements within the Prodomain of Falcipain-2, a Cysteine Protease of the Malaria Parasite Plasmodium falciparum (2009) (49)
- Multiple cathepsin B isoforms in schistosomula of Trichobilharzia regenti: identification, characterisation and putative role in migration and nutrition. (2005) (49)
- Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones. (2017) (49)
- Assembly of macromolecular complexes by satisfaction of spatial restraints from electron microscopy images (2012) (48)
- Human Tryptase ε (PRSS22), a New Member of the Chromosome 16p13.3 Family of Human Serine Proteases Expressed in Airway Epithelial Cells* (2001) (48)
- Structural Modeling of Protein Interactions by Analogy: Application to PSD-95 (2006) (47)
- Molecular Architecture of the Major Membrane Ring Component of the Nuclear Pore Complex. (2017) (47)
- RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D (2021) (46)
- Self-assembly of filamentous amelogenin requires calcium and phosphate: from dimers via nanoribbons to fibrils. (2012) (46)
- Impact of mutations on the allosteric conformational equilibrium. (2013) (46)
- A Residue-Resolved Bayesian Approach to Quantitative Interpretation of Hydrogen-Deuterium Exchange from Mass Spectrometry: Application to Characterizing Protein-Ligand Interactions. (2017) (46)
- Discovery of Competitive and Noncompetitive Ligands of the Organic Cation Transporter 1 (OCT1; SLC22A1). (2017) (46)
- The Overlap of Small Molecule and Protein Binding Sites within Families of Protein Structures (2010) (45)
- Genomics: Functional links between proteins (1999) (45)
- Catalytic mechanism and three-dimensional structure of adenine deaminase. (2011) (44)
- A SARS-CoV-2 protein interaction map reveals targets for drug repurposing (2020) (43)
- Localization of protein‐binding sites within families of proteins (2005) (43)
- Molecular architecture of photoreceptor phosphodiesterase elucidated by chemical cross-linking and integrative modeling. (2014) (43)
- Topological Models of Heteromeric Protein Assemblies from Mass Spectrometry: Application to the Yeast eIF3:eIF5 Complex (2015) (43)
- Formation of Enzymatically Active, Homotypic, and Heterotypic Tetramers of Mouse Mast Cell Tryptases (2000) (43)
- Elucidating the mechanism of substrate recognition by the bacterial Hsp90 molecular chaperone. (2014) (43)
- Integrative structure modeling with IMP (2017) (42)
- Improving Functional Annotation of Non-Synonomous SNPs with Information Theory (2004) (42)
- Phase diagram of a model protein derived by exhaustive enumeration of the conformations (1994) (42)
- Opportunities and Challenges in Building a Spatiotemporal Multi-scale Model of the Human Pancreatic β Cell (2018) (41)
- Structural dynamics of the human COP9 signalosome revealed by cross-linking mass spectrometry and integrative modeling (2020) (41)
- The molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling (2017) (41)
- High Selectivity of the γ-Aminobutyric Acid Transporter 2 (GAT-2, SLC6A13) Revealed by Structure-based Approach* (2012) (41)
- Detecting remotely related proteins by their interactions and sequence similarity. (2005) (40)
- The AnnoLite and AnnoLyze programs for comparative annotation of protein structures (2007) (40)
- Protease accessibility laddering: a proteomic tool for probing protein structure. (2006) (39)
- Prediction of enzyme function by combining sequence similarity and protein interactions (2008) (37)
- Supplemental Data Structure of the Mammalian 80 S Ribosome at 8 . 7 Å Resolution (2008) (37)
- Protein Structure Modeling with MODELLER. (2020) (37)
- Modeling of proteins and their assemblies with the Integrative Modeling Platform. (2014) (37)
- Importin-9 wraps around the H2A-H2B core to act as nuclear importer and histone chaperone (2019) (35)
- Crystallographic conformers of actin in a biologically active bundle of filaments. (2008) (35)
- Detection of homologous proteins by an intermediate sequence search (2004) (34)
- Structural Basis of CD4 Downregulation by HIV-1 Nef (2020) (34)
- A Kernel for Open Source Drug Discovery in Tropical Diseases (2009) (33)
- Insights into HIV-1 proviral transcription from integrative structure and dynamics of the Tat:AFF4:P-TEFb:TAR complex (2016) (33)
- Comparative Protein Structure Modeling in Genomics (1999) (33)
- Tryptase 4, a New Member of the Chromosome 17 Family of Mouse Serine Proteases* (2001) (33)
- Bayesian Weighing of Electron Cryo-Microscopy Data for Integrative Structural Modeling. (2019) (33)
- Prion Protein-Antibody Complexes Characterized by Chromatography-Coupled Small-Angle X-Ray Scattering. (2015) (32)
- Assignment of pterin deaminase activity to an enzyme of unknown function guided by homology modeling and docking. (2013) (32)
- Global Motions of the Nuclear Pore Complex: Insights from Elastic Network Models (2009) (32)
- Structure, dynamics, evolution, and function of a major scaffold component in the nuclear pore complex. (2013) (32)
- Lack of Support for a Role for RLIP76 (RALBP1) in Response to Treatment or Predisposition to Epilepsy (2007) (31)
- Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies (2009) (31)
- EpCAM homo-oligomerization is not the basis for its role in cell-cell adhesion (2018) (29)
- Highly synergistic combinations of nanobodies that target SARS-CoV-2 and are resistant to escape (2021) (28)
- Target practice (2001) (28)
- Consequences of domain insertion on sequence-structure divergence in a superfold (2013) (27)
- Determining Protein Complex Structures Based on a Bayesian Model of in Vivo Förster Resonance Energy Transfer (FRET) Data* (2014) (27)
- Structure, Dynamics, Evolution and Function of a Major Scaffold Component in the Nuclear Pore Complex (2014) (27)
- DBAli tools: mining the protein structure space (2007) (27)
- Enzymatic deamination of the epigenetic base N-6-methyladenine. (2011) (27)
- Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. (2019) (27)
- Structural characterization of assemblies from overall shape and subcomplex compositions. (2005) (26)
- MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map (2011) (26)
- Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry. (2020) (25)
- Modeling Biological Complexes Using Integrative Modeling Platform. (2019) (25)
- Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1 (2018) (25)
- Probing the specificity of a trypanosomal aromatic alpha-hydroxy acid dehydrogenase by site-directed mutagenesis. (2002) (24)
- Evolutionarily Conserved Substrate Substructures for Automated Annotation of Enzyme Superfamilies (2008) (24)
- Human tryptase epsilon (PRSS22), a new member of the chromosome 16p13.3 family of human serine proteases expressed in airway epithelial cells. (2001) (24)
- Analytical and Simulation-Based Models for Drug Release and Gel-Degradation in a Tetra-PEG Hydrogel Drug-Delivery System (2015) (23)
- Urokinase-type plasminogen activator is a preferred substrate of the human epithelium serine protease tryptase ε/PRSS22 (2005) (23)
- ModView, visualization of multiple protein sequences and structures (2003) (23)
- Small-Molecule Allosteric Modulators of the Protein Kinase PDK1 from Structure-Based Docking. (2015) (23)
- Prediction of enzymatic pathways by integrative pathway mapping (2018) (23)
- Protein Structure Modeling (2009) (23)
- Strategic Protein Target Analysis for Developing Drugs to Stop Dental Caries (2012) (22)
- From integrative structural biology to cell biology (2021) (22)
- Assembly and Molecular Architecture of the Phosphoinositide 3-Kinase p85α Homodimer* (2015) (22)
- Predicting CD4 T-cell epitopes based on antigen cleavage, MHCII presentation, and TCR recognition (2018) (21)
- Localization of binding sites in protein structures by optimization of a composite scoring function (2006) (21)
- Functional hot spots in human ATP‐binding cassette transporter nucleotide binding domains (2010) (21)
- Challenges at the frontiers of structural biology. (1999) (20)
- Using Integrative Modeling Platform to compute, validate, and archive a model of a protein complex structure (2020) (20)
- Comparative Protein Structure Modeling 831 831 (2005) (20)
- Comparative protein structure modeling as an optimization problem (1997) (19)
- Integrative structure and function of the yeast exocyst complex (2020) (19)
- Prediction of Substrates for Glutathione Transferases by Covalent Docking (2014) (19)
- Comparisons of the sequences, 3-D structures and mechanisms of pepsin-like and retroviral aspartic proteinases. (1991) (19)
- Integrative analysis reveals unique structural and functional features of the Smc5/6 complex (2021) (19)
- Modeling of proteins and their assemblies with the integrative modeling platform. (2011) (18)
- Structure-guided discovery of new deaminase enzymes. (2013) (18)
- Discovery of a cytokinin deaminase. (2011) (18)
- A Sali Modeling of loops in protein structures (2000) (18)
- NIH workshop on structural proteomics of biological complexes. (2003) (18)
- Archiving and disseminating integrative structure models (2019) (18)
- Structure of a putative BenF‐like porin from Pseudomonas fluorescens Pf‐5 at 2.6 Å resolution (2010) (17)
- Visualizing subcellular rearrangements in intact β cells using soft x-ray tomography (2020) (17)
- Lineage-specific proteins essential for endocytosis in trypanosomes (2017) (17)
- PharmGKB Submission Update: IV. PMT Submissions of Genetic Variations in ATP-Binding Cassette Transporters to the PharmGKB Network (2006) (17)
- Structure of the C‐terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex (2011) (17)
- 2007 Annual progress report synopsis of the Center for Structures of Membrane Proteins (2009) (17)
- Enhancer Reprogramming within Pre-existing Topologically Associated Domains Promotes TGF-β-Induced EMT and Cancer Metastasis. (2020) (17)
- Properties and structure of human spleen stefin B - a low molecular weight protein inhibitor of cysteine proteinases (1986) (16)
- Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145 (2010) (16)
- MODBASE, a database of annotated comparative protein structure models, and associated resources (2004) (16)
- Proteome-wide mapping of immune features onto Plasmodium protein three-dimensional structures (2018) (16)
- Computational Discovery and Experimental Validation of Inhibitors of the Human Intestinal Transporter OATP2B1. (2017) (16)
- Structure of γ-tubulin small complex based on a cryo-EM map, chemical cross-links, and a remotely related structure. (2016) (15)
- Urokinase-type plasminogen activator is a preferred substrate of the human epithelium serine protease tryptase epsilon/PRSS22. (2005) (15)
- Optimizing model representation for integrative structure determination of macromolecular assemblies (2018) (15)
- Genetic interaction mapping informs integrative structure determination of protein complexes (2020) (15)
- Crippling life support for SARS-CoV-2 and other viruses through synthetic lethality (2020) (15)
- Modeling Protein Structure from its Sequence (2003) (14)
- Bayesian metamodeling of complex biological systems across varying representations (2021) (14)
- ModLink+: improving fold recognition by using protein-protein interactions (2009) (14)
- Comparative Protein Structure Prediction (2002) (13)
- A structural perspective on proteinprotein interactions (2004) (13)
- A survey of integral α-helical membrane proteins (2009) (13)
- CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation (2020) (13)
- Letter to the Editor: 1H, 13C, 15N resonance assignments and fold verification of a circular permuted variant of the potent HIV-inactivating protein cyanovirin-N* (2001) (13)
- Virtual ligand screening against comparative protein structure models. (2012) (12)
- A novel conformation of E. coli Hsp90 in solution: insights into the conformational dynamics of Hsp90 (2008) (11)
- Structure of the mammalian 80S ribosome at 87 angstrom resolution (2008) (11)
- Deamination of 6-aminodeoxyfutalosine in menaquinone biosynthesis by distantly related enzymes. (2013) (11)
- SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes (2013) (11)
- Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes (2015) (11)
- Human Concentrative Nucleoside Transporter 3 (hCNT3, SLC28A3) Forms a Cyclic Homotrimer. (2017) (11)
- Nanobody Repertoires for Exposing Vulnerabilities of SARS-CoV-2 (2021) (10)
- New system for archiving integrative structures (2021) (10)
- Protein dynamics: From the native to the unfolded state and back again (1995) (10)
- Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students (2022) (10)
- RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning (2022) (10)
- Protein Interactions and Disease Phenotypes in the ABC Transporter Superfamily (2006) (9)
- Structural Model of the Bilitranslocase Transmembrane Domain Supported by NMR and FRET Data (2015) (9)
- From systems to structure — using genetic data to model protein structures (2022) (9)
- Integrating Diverse Data For Structure Determination of Macromolecular Assemblies (2010) (9)
- Thermodynamics and kinetics of protein folding (1995) (9)
- Ratiocinative screen of eukaryotic integral membrane protein expression and solubilization for structure determination (2009) (9)
- A quantitative map of nuclear pore assembly reveals two distinct mechanisms (2021) (9)
- Reconstruction of 3D structures of MET antibodies from electron microscopy 2D class averages (2017) (8)
- Soft X-ray tomography to map and quantify organelle interactions at the mesoscale. (2022) (8)
- A kernel for the Tropical Disease Initiative (2009) (8)
- Glutamine Side Chain 13C═18O as a Nonperturbative IR Probe of Amyloid Fibril Hydration and Assembly. (2019) (8)
- Clustering of disulfide-rich peptides provides scaffolds for hit discovery by phage display: application to interleukin-23 (2016) (8)
- Integrative Structure Determination of Protein Assemblies by Satisfaction of Spatial Restraints (2008) (7)
- Prediction of the secondary structures of stefins and cystatins, the low-molecular mass protein inhibitors of cysteine proteinases. (1987) (7)
- SSEThread: Integrative threading of the DNA-PKcs sequence based on data from chemical cross-linking and hydrogen deuterium exchange. (2019) (7)
- Erratum: Molecular architecture of the 40S·eIF1·eIF3 translation initiation complex (Cell (2014) 158 (1123-1135)) (2014) (7)
- Structure Determination of Macromolecular Complexes by Experiment and Computation (2008) (7)
- In support of the BMRB (2012) (7)
- Multi-scale Bayesian modeling of cryo-electron microscopy density maps (2017) (7)
- Structure of complement C 3 ( H 2 O ) revealed by quantitative cross-linking / mass spectrometry and modelling (2016) (6)
- Atomic structure of the nuclear pore complex targeting domain of a Nup116 homologue from the yeast, Candida glabrata (2012) (6)
- Soluble TREM2 inhibits secondary nucleation of Aβ fibrillization and enhances cellular uptake of fibrillar Aβ (2022) (6)
- The active DNA-PK holoenzyme occupies a tensed state in a staggered synaptic complex. (2020) (6)
- Comparative Modeling of Drug Target Proteins (2007) (6)
- Improving functional annotation of no n-s yno no mo us s nps with information theory (2005) (6)
- PATTERNS OF SEQUENCE VARIATION IN FAMILIES OF HOMOLOGOUS PROTEINS (1991) (6)
- Comparative protein structure modeling with Modeller: A practical approach (2001) (6)
- FIGURES FOR : A conserved coatomer-related complex containing Sec 13 and Seh 1 dynamically associates with the vacuole in Saccharomyces cerevisiae (2011) (5)
- Global Protease Activity Profiling Identifies HER2-Driven Proteolysis in Breast Cancer. (2021) (5)
- Macromolecular Assemblies Highlighted (2005) (5)
- Comparative Modeling of Drug Target Proteins☆ (2014) (5)
- Biochemical characterization and structural modeling of human cathepsin E variant 2 in comparison to the wild-type protein (2012) (5)
- The EBF1-PDGFRB T681I mutation is highly resistant to imatinib and dasatinib in vitro and detectable in clinical samples prior to treatment (2021) (5)
- Reversible phosphorylation of cyclin T1 promotes assembly and stability of P-TEFb (2021) (5)
- RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D (2022) (5)
- Evolution and Physics in Comparative Protein Structure Modeling (2002) (5)
- The YΦ motif defines the structure-activity relationships of human 20S proteasome activators (2021) (4)
- Knowledge-Based Protein Modelling: Human Plasma Kallikrein and Human Neutrophil Defensin (1990) (4)
- Correction: Cro-Magnons Conquered Europe, but Left Neanderthals Alone (2005) (4)
- Novel TKI-resistant BCR-ABL1 gatekeeper residue mutations retain in vitro sensitivity to axitinib (2016) (4)
- Structure and Functional Anatomy of the Nuclear Pore Complex (2018) (4)
- Bayesian weighing of electron cryo-microscopy data for integrative structural modeling (2018) (4)
- Macromolecular assembly structures by comparative modeling and electron microscopy. (2012) (4)
- Integration of software tools for integrative modeling of biomolecular systems. (2022) (4)
- Electron microscopy holdings of the Protein Data Bank: the impact of the resolution revolution, new validation tools, and implications for the future (2022) (4)
- Mapping polymerization and allostery of hemoglobin S using point mutations. (2013) (4)
- Correction: Components of Coated Vesicles and Nuclear Pore Complexes Share a Common Molecular Architecture (2005) (3)
- Towards Increased Reliability, Transparency and Accessibility in Crosslinking Mass Spectrometry (2020) (3)
- Applications of environment specific amino acid substitution tables to identification of key residues in protein tertiary structure (1990) (3)
- Auto-segmentation and time-dependent systematic analysis of mesoscale cellular structure in β-cells during insulin secretion (2022) (3)
- Institutional Profile: The University of California Pharmacogenomics Center: at the interface of genomics, biological mechanisms and drug therapy. (2009) (2)
- Integrative analysis reveals unique features of the Smc5/6 complex (2021) (2)
- Molecular Architecture of the Nup82 Complex, the Cytoplasmic mRNA Export Platform in the Nuclear Pore Complex (2016) (2)
- Human stefins and cystatins: their properties and structural relationships (1986) (2)
- Guinea Pig Prion Protein Supports Rapid Propagation of Bovine Spongiform Encephalopathy and Variant Creutzfeldt-Jakob Disease Prions (2016) (2)
- IMProv: A Resource for Cross-link-Driven Structure Modeling that Accommodates Protein Dynamics (2021) (2)
- An intensity-based post-processing tool for 3D instance segmentation of organelles in soft X-ray tomograms (2022) (2)
- Site‐directed Mutagenesis of Recombinant Human β2‐Glycoprotein I Effect of Phospholipid Binding and Anticardiolipin Antibody Activity (1997) (2)
- Author response: Molecular architecture of the yeast Mediator complex (2015) (2)
- Modelling three-dimensional structure of a protein from its amino acid sequence. (1991) (2)
- Doublecortin engages the microtubule lattice through a cooperative binding mode involving its C-terminal domain (2021) (2)
- Response to Paoli (2001) (2)
- A data dictionary for archiving integrative/hybrid models (2017) (2)
- Bayesian multi-scale modeling of macromolecular structures based on cryo-electron microscopy density maps (2018) (2)
- ModelCIF: An extension of PDBx/mmCIF data representation for computed structure models (2022) (2)
- Supplementary Figures 1-18 (2010) (2)
- Characterization of an A3G-VifHIV-1-CRL5-CBFβ Structure Using a Cross-linking Mass Spectrometry Pipeline for Integrative Modeling of Host–Pathogen Complexes (2021) (2)
- Development of a Prototyp e System for Archiving Integrative / Hybrid Structure Models of Biological Macromolecules Graphical (2018) (1)
- Integrative Structure Determination of Protein Complexes by Inferred Structural Equivalence (2018) (1)
- Urokinase-type plasminogen activator is a preferred substrate of the human epithelium serine protease tryptase / PRSS 22 (2005) (1)
- Supplemental Data Comprehensive Molecular Structure of the Eukaryotic Ribosome (2009) (1)
- Spc110 N-Terminal Domains Act Independently to Mediate Stable γ-Tubulin Small Complex Binding and γ-Tubulin Ring Complex Assembly (2018) (1)
- The Active DNA-PK Holoenzyme Occupies a Tensed State in a Staggered Synaptic Complex (2020) (1)
- Proteome-wide mapping of immune features onto Plasmodium protein three-dimensional structures (2018) (1)
- Single Particle Cryo-EM of RyR1 Channel at Subnanometer Resolution (2007) (1)
- Structural Genomics at the National Synchrotron Light Source (2002) (1)
- Integrative Pathway Mapping (2016) (1)
- Modeling the structures of proteins and macromolecular assemblies (2006) (1)
- Modeling Conformational Changes in Proteins Based on Second Harmonic Generation Data (2019) (0)
- Conformational Dynamics of the Activated GLP-1 Receptor-Gs Complex Revealed by Cross-Linking Mass Spectrometry and Integrative Structure Modeling (2023) (0)
- Structural Determination of Macromolecular Machines Guided By Proteomics and Electron Microscopy (2010) (0)
- Assembly of the p 85 α homodimer 1 Assembly and Molecular Architecture of the Phosphoinositide 3-Kinase p 85 α homodimer (2015) (0)
- The combination of Small-Angle X-ray Scattering fitting and protein structure modeling in Integrative Modeling Platform (2009) (0)
- Structural Basis of Prostaglandin Efflux by MRP4 (2022) (0)
- Modeling of the bacterial molecular chaperone GroEL using 3D EM data and cnmultifit (2012) (0)
- In-vitro to In-silico – How Computers are Arming Biology! (2018) (0)
- Modeling of the Nup84 subcomplex of the Nuclear Pore Complex (2014) (0)
- Striking the Balance between Selectivity and Efficiency: An Integrative Model of Nucleocytoplasmic Transport (2017) (0)
- Abstracts (1968) (0)
- Cryo-EM structure of gamma-TuSC oligomers in a closed conformation (2016) (0)
- Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13 (2023) (0)
- Modeling of the phosphodiesterase (PDE6) (2014) (0)
- Quantitative analysis of the intracellular organelle interaction using soft X-ray tomography (2022) (0)
- In-situ molecular architecture dynamism of the nuclear pore complex (2022) (0)
- Crystal structure of the autoproteolytic domain from the nuclear pore complex component NUP145 from Saccharomyces cerevisiae (2009) (0)
- Large scale analysis of synaptic phosphorylation and O‐GlcNAcylation reveals complex interplay between these post‐translational modifications (2012) (0)
- Roles of ATP binding and hydrolysis in CFTR Cl- channel gating (2001) (0)
- Benchmark of the SAXS Merge method (2013) (0)
- From the comparative analysis of proteins to knowledge based modeling (1990) (0)
- Human 20S proteasome bound to an engineered 11S (PA26) activator (2020) (0)
- Structure of the 60S proteins for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution (2009) (0)
- In situ structure of actin remodeling during glucose-stimulated insulin secretion using cryo-electron tomography (2023) (0)
- DRES-11. A CROSS-ACTIVATING c-Met/β1 INTEGRIN COMPLEX DRIVES THERAPEUTIC RESISTANCE IN GLIOBLASTOMA (2016) (0)
- Archiving of Integrative/Hybrid Structural Models (2019) (0)
- Structural characterisation of the Nuclear Pore Complex (2005) (0)
- EpCAM homo-oligomerization is not the basis for its role in cell-cell adhesion (2018) (0)
- Structural genomics. (2007) (0)
- STRUCTURE NOTE Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex (2011) (0)
- Archiving Integrative Structural Models (2021) (0)
- Modeling of the Nup133 subunit of the yeast Nuclear Pore Complex (2014) (0)
- Mass Spec Benchmark (2014) (0)
- Structure meets the membrane. (2011) (0)
- MODELING THE THREE-DIMENSIONAL STRUCTURE OF THE YEAST NUCLEAR PORE COMPLEX (2002) (0)
- Quantitative, in situ visualization of intracellular insulin vesicles in pancreatic beta cells (2022) (0)
- Multi-state modeling of the PhoQ two-component system (2014) (0)
- STRUCTURAL STUDIES OF CHOLESTEROL BIOSYNTHESIS: MEVALONATE 5-DIPHOSPHATE DECARBOXYLASE AND ISOPENTENYL DIPHOSPHATE ISOMERASE (2001) (0)
- Modeling exosome complexes from cross-link MS data (2015) (0)
- Leading Edge Primer Principles for Integrative Structural Biology Studies (2019) (0)
- Growing an editorial board for an ever expanding field. (2015) (0)
- Crystal structure of the autoproteolytic domain from the nuclear pore complex component NUP145 from Saccharomyces cerevisiae in the Hexagonal, P61 space group (2009) (0)
- Qualitative model for the evolution of NRPS/PKS domains. (2014) (0)
- Cellulose utilization by Clostridium thermocellum : Bioenergetics and hydrolysis product assimilation (2005) (0)
- Symposium 1: Structure and engineering of proteins: New developments (1990) (0)
- Structure of protein assemblies by comparative modeling and electron microscopy (2005) (0)
- Editorial overview: Biophysical and molecular biological methods. (2016) (0)
- Functional Characterization of GAT-2 1 High selectivity of the γ-Aminobutyric acid ( GABA ) transporter 2 ( GAT-2 , SLC 6 A 13 ) revealed by structure-based approach (2012) (0)
- Benchmark of the FRETR Bayesian restraint (2014) (0)
- A Bayesian Integrative Structure Model of the Yeast Centrosome (2018) (0)
- NCBS SYMPOSIUM ON MOLECULES, MACHINES AND NETWORKS (2003) (0)
- Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution (2009) (0)
- Conservation and structural analysis of the Xenopus laevis phospho-proteome (2014) (0)
- Dynamic molecular mechanism of the nuclear pore complex permeability barrier (2023) (0)
- Table of contents (1989) (0)
- CRYSTAL STRUCTURE OF M.JANNASCHII EIF6 (2000) (0)
- Chapter 4 Protein Structure Modeling with MODELLER (2018) (0)
- Crystal structure of mandelate racemase/muconate lactonizing enzyme from Bacillus subtilis at 1.8 A resolution (2006) (0)
- Response to “Predictable difficulty or difficulty to predict” (2011) (0)
- Actin filament model in the extended form of acromsomal bundle in the Limulus sperm (2008) (0)
- Celebrating 20 years of Structure. (2013) (0)
- PNAS Plus Significance Statements (2013) (0)
- Structural heterogeneity of nuclear pores in yeast. (2023) (0)
- Face To Face (2020) (0)
- Author response: Insights into HIV-1 proviral transcription from integrative structure and dynamics of the Tat:AFF4:P-TEFb:TAR complex (2016) (0)
- Improving Comparative Structure Modeling through the Use of Multiple Templates (2006) (0)
- The methods that rely on multiple 100 , 000 protein structures for the biologist (1998) (0)
- Author response: Highly synergistic combinations of nanobodies that target SARS-CoV-2 and are resistant to escape (2021) (0)
- Integrative structure and functional anatomy of a single spoke of a nuclear pore complex (2018) (0)
- CRYSTAL STRUCTURE OF THE DELTA PRIME SUBUNIT OF THE CLAMP-LOADER COMPLEX OF ESCHERICHIA COLI DNA POLYMERASE III (1998) (0)
- Classification of Human Solute Carrier Superfamily Members Reveals Functional Similarities across Families (2010) (0)
- Author response: Reversible phosphorylation of cyclin T1 promotes assembly and stability of P-TEFb (2021) (0)
- Reply to Moult et al. (2002) (0)
- Structure of the 80S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution (2014) (0)
- Knowledge-Based Protein Modeling and the Design of Novel Molecules (1990) (0)
- Crystal structure of the C-terminal domain from the nuclear pore complex component NUP133 from Saccharomyces cerevisiae (2010) (0)
- Assembly and levels of P-TEFb depend on reversible phosphorylation of cyclinT1 (2021) (0)
- Rigid-body assignment in integrative determination of protein complex structures (2022) (0)
- Determining the configuration of macromolecular assembly components based on cryoEM density fitting and pairwise geometric complementarity (2007) (0)
- Edinburgh Research Explorer Structure of complement C3(H2O) revealed by quantitative cross-linking/mass spectrometry and modelling (2018) (0)
- Determining the 3D Topologies of Heteromeric Protein Assemblies by a Mass-Spectrometry Based Hybrid Approach (2014) (0)
- Fate o f Two Mast Cell Tryptases in V 3 Mastocytosis and Normal B A L B / c Mice Undergoing Passive Systemic Anaphylaxis : Prolonged Retent ion o f Exocytosed (2003) (0)
- Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1 (2018) (0)
- The Third Georgia Tech-Emory International Conference on Bioinformatics: In Silico Biology; Bioinformatics After Human Genome (November 15-18, 2001, Atlanta, Georgia, USA) (2001) (0)
- Regulation of the human 26 S proteasome by Ecm 29 1 The Proteasome-Interacting Ecm 29 Protein Disassembles the 26 S Proteasome in Response to Oxidative Stress (2017) (0)
- Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13 (2023) (0)
- Modeling of Protein Complex Architectures using Combinatorial Genetic Perturbations (2019) (0)
- THE X-RAY CRYSTAL STRUCTURE OF MEVALONATE 5-DIPHOSPHATE DECARBOXYLASE AT 2.3 ANGSTROM RESOLUTION. (2001) (0)
- Archiving and disseminating integrative structure models (2019) (0)
- Small-angle scattering data representation in SASCIF and integrative/hybrid methods dictionary (2017) (0)
- Crystal Structure of Mandelate Racemase/Muconate Lactonizing Enzyme from Bacillus Subtilis complexed with MG++ at 1.8 A (2006) (0)
- Clustering of disulfide-rich peptides provides scaffolds for hit discovery by phage display: application to interleukin-23 (2016) (0)
- Integrative Structure Determination of the Components of the Nuclear Pore Complex by X-Ray Crystallography, Small Angle X-Ray Scattering, Electron Microscopy, NMR, and Comparative Modeling (2012) (0)
- Modeling of the yeast Nuclear Pore Complex (2018) (0)
- Structure snapshot: Integrative structure determination of histones H3 and H4 using genetic interactions. (2022) (0)
- Domain Motions in Protein Crystals (1996) (0)
- CRYSTAL STRUCTURE OF S.CEREVISIAE EIF6 (2000) (0)
- RNA Pol II(G) (2019) (0)
- A Data Dictionary and Prototype Deposition System for Archiving Integrative/Hybrid Models (2018) (0)
- Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (2003) (0)
- Crystal structure of the C-terminal domain of nuclear pore complex component NUP116 from Candida glabrata (2010) (0)
- Conducting an Integrative Structural Biology Study (2019) (0)
- Determination of the Pseudo-Atomic Structure of Nuclear Pore Complex (NPC) Components by Small Angle X-Ray Scattering (SAXS) and Computational Modeling (2010) (0)
- The Second Georgia Tech International Conference on Bioinformatics: Sequence, Structure and Function (November 11-14, 1999, Atlanta, Georgia, USA) (1999) (0)
- STRUCTURE, EVOLUTION AND MECHANISM OF THE NUCLEAR PORE COMPLEX (2006) (0)
- Multi-State Modeling of Biomolecules by Satisfaction of Spatial Restraints from Single-Particle Electron Microscopy Images (2017) (0)
- Importin-9 wraps around the H 2 AH 2 B core to act as nuclear importer 1 and histone chaperone 2 3 (0)
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