Andrew Oates
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Computer Science
Andrew Oates's Degrees
- PhD Computer Science Stanford University
- Masters Computer Science University of California, Berkeley
- Bachelors Computer Science University of California, Berkeley
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Why Is Andrew Oates Influential?
(Suggest an Edit or Addition)According to Wikipedia, Andrew 'Andy' Charles Oates is an Australian and British developmental biologist and embryologist specialized in biological pattern formation. He is professor at EPFL and head of the Segmentation Timing and Dynamics Laboratory at EPFL's School of Life Sciences. Since 2021, he has been dean of EPFL's School of Life Sciences.
Andrew Oates's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- The cloche and spadetail genes differentially affect hematopoiesis and vasculogenesis. (1998) (534)
- Morphologic and functional characterization of granulocytes and macrophages in embryonic and adult zebrafish. (2001) (469)
- SCL/Tal-1 transcription factor acts downstream of cloche to specify hematopoietic and vascular progenitors in zebrafish. (1998) (365)
- Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates. (2007) (339)
- Patterning embryos with oscillations: structure, function and dynamics of the vertebrate segmentation clock (2012) (332)
- Boundary formation and maintenance in tissue development (2010) (304)
- Hairy/E(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signaling pathway in the formation of anterior segmental boundaries in the zebrafish. (2002) (287)
- Force transmission during adhesion-independent migration (2015) (254)
- Positional cloning of the zebrafish sauternes gene: a model for congenital sideroblastic anaemia (1998) (241)
- Synchrony Dynamics During Initiation, Failure, and Rescue of the Segmentation Clock (2007) (240)
- Zebrafish SPI-1 (PU.1) marks a site of myeloid development independent of primitive erythropoiesis: implications for axial patterning. (2002) (218)
- Evolutionary plasticity of segmentation clock networks (2011) (177)
- Too much interference: injection of double-stranded RNA has nonspecific effects in the zebrafish embryo. (2000) (165)
- Characterization of embryonic globin genes of the zebrafish. (2003) (161)
- Quantitative approaches in developmental biology (2009) (155)
- Intercellular Coupling Regulates the Period of the Segmentation Clock (2010) (152)
- Dynamics of zebrafish somitogenesis (2008) (139)
- Coilin-dependent snRNP assembly is essential for zebrafish embryogenesis (2010) (138)
- Delayed coupling theory of vertebrate segmentation (2008) (132)
- Zebrafish stat3 is expressed in restricted tissues during embryogenesis and stat1 rescues cytokine signaling in a STAT1‐deficient human cell line (1999) (126)
- Distinct Subdomains of the EphA3 Receptor Mediate Ligand Binding and Receptor Dimerization* (1998) (116)
- A Doppler effect in embryonic pattern formation (2014) (112)
- The zebrafish klf gene family. (2001) (111)
- Topology and Dynamics of the Zebrafish Segmentation Clock Core Circuit (2012) (108)
- Segment Number and Axial Identity in a Segmentation Clock Period Mutant (2010) (99)
- The evolution of paired appendages in vertebrates: T-box genes in the zebrafish (2000) (92)
- Computational Approaches to Developmental Patterning (2012) (89)
- tbx20, a new vertebrate T-box gene expressed in the cranial motor neurons and developing cardiovascular structures in zebrafish (2000) (89)
- Gene duplication of zebrafish JAK2 homologs is accompanied by divergent embryonic expression patterns: only jak2a is expressed during erythropoiesis. (1999) (84)
- Persistence, period and precision of autonomous cellular oscillators from the zebrafish segmentation clock (2016) (83)
- Zebrafish lunatic fringe demarcates segmental boundaries (2001) (79)
- Simple and efficient transgenesis with meganuclease constructs in zebrafish. (2009) (69)
- Zebrafish gcm2 is required for gill filament budding from pharyngeal ectoderm. (2004) (68)
- An early developmental role for Eph-ephrin interaction during vertebrate gastrulation (1999) (66)
- The role of the Eph-ephrin signalling system in the regulation of developmental patterning. (2002) (66)
- Additional hox clusters in the zebrafish: divergent expression patterns belie equivalent activities of duplicate hoxB5 genes (2001) (66)
- Wnt-regulated dynamics of positional information in zebrafish somitogenesis (2014) (66)
- Cooperative function of deltaC and her7 in anterior segment formation. (2005) (60)
- Molecular cloning, genetic mapping, and expression analysis of four zebrafish c/ebp genes. (2001) (59)
- Completing the set of h/E(spl) cyclic genes in zebrafish: her12 and her15 reveal novel modes of expression and contribute to the segmentation clock. (2007) (54)
- Dynamic control of Cajal body number during zebrafish embryogenesis (2010) (53)
- Coordination of symmetric cyclic gene expression during somitogenesis by Suppressor of Hairless involves regulation of retinoic acid catabolism. (2007) (53)
- Tbx6, Mesp-b and Ripply1 regulate the onset of skeletal myogenesis in zebrafish (2015) (49)
- Segmentation of the zebrafish axial skeleton relies on notochord sheath cells and not on the segmentation clock (2018) (47)
- Collective modes of coupled phase oscillators with delayed coupling. (2012) (47)
- A novel myeloid-restricted zebrafish CCAAT/enhancer-binding protein with a potent transcriptional activation domain. (2001) (46)
- Delta-Notch signalling in segmentation (2017) (43)
- Faster embryonic segmentation through elevated Delta-Notch signalling (2016) (43)
- The segmentation clock: inherited trait or universal design principle? (2012) (42)
- What's all the noise about developmental stochasticity? (2011) (42)
- Zebrafish homolog of the leukemia gene CBFB: its expression during embryogenesis and its relationship to scl and gata-1 in hematopoiesis. (2000) (41)
- Zebrafish Angiotensin II Receptor-like 1a (agtrl1a) is expressed in migrating hypoblast, vasculature, and in multiple embryonic epithelia. (2007) (40)
- Dynamics of mobile coupled phase oscillators (2013) (33)
- What are you synching about? Emerging complexity of notch signaling in the segmentation clock. (2020) (31)
- Interplay between intercellular signaling and cell movement in development. (2014) (29)
- Continuum theory of gene expression waves during vertebrate segmentation (2015) (27)
- Genomic Structure and Expression of the Mouse Growth Factor Receptor Related to Tyrosine Kinases (Ryk)* (1999) (27)
- A crucial interaction between embryonic red blood cell progenitors and paraxial mesoderm revealed in spadetail embryos. (2004) (26)
- Timing by rhythms: Daily clocks and developmental rulers (2015) (25)
- Generation of segment polarity in the paraxial mesoderm of the zebrafish through a T-box-dependent inductive event. (2005) (25)
- Multiple embryo time-lapse imaging of zebrafish development. (2009) (24)
- Object Segmentation and Ground Truth in 3D Embryonic Imaging (2016) (23)
- Embryonic expression and activity of doughnut, a second RYK homolog in Drosophila (1998) (21)
- Chevron formation of the zebrafish muscle segments (2014) (20)
- Live transgenic reporters of the vertebrate embryo's Segmentation Clock. (2011) (19)
- Optimal cellular mobility for synchronization arising from the gradual recovery of intercellular interactions (2012) (19)
- Sequential pattern formation governed by signaling gradients (2016) (16)
- Waiting on the Fringe: cell autonomy and signaling delays in segmentation clocks. (2020) (14)
- Analysis and visualization of cell movement in the developing zebrafish brain (2006) (14)
- Tissue micromanipulation in zebrafish embryos. (2009) (14)
- Small molecule screen in embryonic zebrafish using modular variations to target segmentation (2017) (13)
- Control of endogenous gene expression timing by introns (2011) (13)
- Mechanochemical coupling and developmental pattern formation (2017) (11)
- A framework for quantification and physical modeling of cell mixing applied to oscillator synchronization in vertebrate somitogenesis (2017) (10)
- Towards a physical understanding of developmental patterning (2021) (10)
- Patterning and mechanics of somite boundaries in zebrafish embryos. (2020) (10)
- Left–right symmetry of zebrafish embryos requires somite surface tension (2022) (9)
- Generation of Dispersed Presomitic Mesoderm Cell Cultures for Imaging of the Zebrafish Segmentation Clock in Single Cells (2014) (9)
- Detection of mRNA by Whole Mount in situ Hybridization and DNA Extraction for Genotyping of Zebrafish Embryos. (2019) (9)
- Cell-autonomous generation of the wave pattern within the vertebrate segmentation clock (2021) (9)
- Breathe in and Straighten Your Back: Hypoxia, Notch, and Scoliosis (2012) (7)
- Correction: Object Segmentation and Ground Truth in 3D Embryonic Imaging (2016) (7)
- Theory of time delayed genetic oscillations with external noisy regulation (2021) (6)
- Distributed delays in systems of coupled phase oscillators (2012) (5)
- Nonlinearity arising from noncooperative transcription factor binding enhances negative feedback and promotes genetic oscillations. (2014) (5)
- Enhanced SnapShot: The Segmentation Clock (2011) (5)
- Instruments of change for academic tool development (2021) (5)
- How does the anatomical site of primitive hematopoiesis change its location through evolution (1999) (4)
- Embryonic lateral inhibition as optical modes: An analytical framework for mesoscopic pattern formation. (2018) (4)
- Opening a can of centipedes: new insights into mechanisms of body segmentation (2013) (3)
- Somite deformations buffer imprecise segment lengths to ensure left-right symmetry (2020) (3)
- From local resynchronization to global pattern recovery in the zebrafish segmentation clock (2020) (3)
- S18-04 Synchronization of oscillating cells during embryogenesis (2009) (2)
- Noise and oscillations in biological systems: multidisciplinary approach between experimental biology, theoretical modelling and synthetic biology (2012) (2)
- A novel myeloid-restricted zebrafish C/EBP with a potent transcriptional activation domain. (2000) (2)
- 15-P018 A phase-ordered microarray screen for cyclic genes in zebrafish reveals her genes as the conserved core of the somitogenesis clock (2009) (2)
- The Sweetness of Embryonic Elongation and Differentiation. (2017) (2)
- Comprar Zebrafish · Methods and Protocols | Lieschke, Graham J. | 9781603279765 | Springer (2009) (1)
- Reaction wavefront theory of notochord segment patterning (2022) (1)
- Deconstructing body axis morphogenesis in zebrafish embryos using robot-assisted tissue micromanipulation (2022) (1)
- A unique myeloid-specific C/EBP transcription factor is present in zebrafish. (1999) (1)
- Opening a can of centipedes: new insights into mechanisms of body segmentation (2013) (1)
- Author response: Persistence, period and precision of autonomous cellular oscillators from the zebrafish segmentation clock (2015) (1)
- Erythropoiesis Is Expressed During jak2a Divergent Embryonic Expression Patterns: Only Homologs Is Accompanied by JAK2 Gene Duplication of Zebrafish (2010) (0)
- Synchronization in the presence of distributed delays (2012) (0)
- Gene expression pattern tbx 20 , a new vertebrate T-box gene expressed in the cranial motor neurons and developing cardiovascular structures in zebra ® sh (2000) (0)
- The zebrafishklf gene family (2001) (0)
- Emergence of bilaterally symmetric somites (2017) (0)
- Preparation of Single-Somite Explants from Zebrafish Embryos. (2022) (0)
- Redundancy between components of the segmentation oscillator and the Delta/Notch pathway protects the anterior somites of zebrafish from genetic perturbation. (2002) (0)
- EPH receptors and their ephrin ligands play important roles during early development (1999) (0)
- and maintain conserved synteny in vertebrates Genomic regulatory blocks encompass multiple neighboring genes (2007) (0)
- JAK/STATS in Zebrafish (2003) (0)
- Force transduction during adhesion-independent migration. (2014) (0)
- T-box genes and the evolution of paired vertebrate appendages. (1999) (0)
- Genetic Oscillations and Vertebrate Embryonic Development (2016) (0)
- Small molecule screen in embryonic zebrafish using modular variations to target segmentation (2017) (0)
- Theory of genetic oscillations with external noisy regulation (2020) (0)
- Seminars in Cell & Developmental Biology (2014) (0)
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