Andrey Rzhetsky
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Computer Science Physics
Andrey Rzhetsky's Degrees
- PhD Biophysics Moscow Institute of Physics and Technology
- Masters Physics Moscow Institute of Physics and Technology
Why Is Andrey Rzhetsky Influential?
(Suggest an Edit or Addition)According to Wikipedia, Andrey Rzhetsky is the Edna K. Papazian Professor of Medicine and Professor of Human Genetics at the University of Chicago, where he is also Co-Chief of the Section of Computational Biomedicine and Biomedical Data Science. Born in Kazakhstan, Rzhetsky was recruited to Pennsylvania State University by Masatoshi Nei in 1991 from the Institute of Cytology and Genetics in Novosibirsk, Russia. Rzhetsky did his postdoc at Penn State under Nei, who also helped him obtain his permanent residency in the United States. He joined the faculty at Columbia University in 1996. He joined the faculty of the University of Chicago in 2007, and was named the Edna K. Papazian Professor there in 2016.
Andrey Rzhetsky's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- A Simple Method for Estimating and Testing Minimum-Evolution Trees (1992) (1421)
- A Spatial Map of Olfactory Receptor Expression in the Drosophila Antenna (1999) (1128)
- Immunity-Related Genes and Gene Families in Anopheles gambiae (2002) (909)
- Phylogenetic test of the molecular clock and linearized trees. (1995) (822)
- The human ATP-binding cassette (ABC) transporter superfamily. (2001) (660)
- A Chemosensory Gene Family Encoding Candidate Gustatory and Olfactory Receptors in Drosophila (2001) (644)
- Theoretical foundation of the minimum-evolution method of phylogenetic inference. (1993) (620)
- BioPAX – A community standard for pathway data sharing (2010) (594)
- GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles (2001) (576)
- Human aldehyde dehydrogenase gene family. (1998) (491)
- The Genomic Sequence of the Accidental Pathogen Legionella pneumophila (2004) (479)
- Tradition and Innovation in Scientists’ Research Strategies (2013) (351)
- Probing genetic overlap among complex human phenotypes (2007) (315)
- Origin of the metazoan phyla: molecular clocks confirm paleontological estimates. (1998) (310)
- GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data (2004) (295)
- Network properties of genes harboring inherited disease mutations (2008) (293)
- Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference (1992) (272)
- Using BLAST for identifying gene and protein names in journal articles. (2000) (234)
- Disambiguating proteins, genes, and RNA in text: a machine learning approach (2001) (225)
- Two biomedical sublanguages: a description based on the theories of Zellig Harris (2002) (221)
- A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk (2013) (197)
- New directions in biomedical text annotation: definitions, guidelines and corpus construction (2006) (190)
- Birth and death of protein domains: A simple model of evolution explains power law behavior (2002) (187)
- Interior-branch and bootstrap tests of phylogenetic trees. (1995) (184)
- Learning to predict protein-protein interactions from protein sequences (2003) (183)
- Molecular triangulation: bridging linkage and molecular-network information for identifying candidate genes in Alzheimer's disease. (2004) (168)
- Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome (2001) (160)
- Choosing experiments to accelerate collective discovery (2015) (156)
- Classification of common human diseases derived from shared genetic and environmental determinants (2017) (155)
- Tests of applicability of several substitution models for DNA sequence data. (1995) (149)
- Two new genes from the human ATP-binding cassette transporter superfamily, ABCC11 and ABCC12, tandemly duplicated on chromosome 16q12. (2001) (140)
- Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users (2008) (130)
- Analysis of Drosophila Segmentation Network Identifies a JNK Pathway Factor Overexpressed in Kidney Cancer (2009) (126)
- Automated microfluidic platform for dynamic and combinatorial drug screening of tumor organoids (2020) (118)
- Corrigendum: The BioPAX community standard for pathway data sharing (2010) (114)
- Estimating substitution rates in ribosomal RNA genes. (1995) (104)
- DiseaseConnect: a comprehensive web server for mechanism-based disease–disease connections (2014) (102)
- Seeking a New Biology through Text Mining (2008) (101)
- Environmental pollution is associated with increased risk of psychiatric disorders in the US and Denmark (2019) (96)
- A knowledge model for analysis and simulation of regulatory networks (2000) (80)
- Quantitative systems-level determinants of human genes targeted by successful drugs. (2008) (77)
- Exon/intron structure of aldehyde dehydrogenase genes supports the "introns-late" theory. (1997) (73)
- Automatic extraction of gene and protein synonyms from MEDLINE and journal articles (2002) (72)
- Genetic-linkage mapping of complex hereditary disorders to a whole-genome molecular-interaction network. (2008) (68)
- How many scientific papers should be retracted? (2007) (68)
- Identification of the Anopheles gambiae ATP-binding cassette transporter superfamily genes. (2003) (67)
- Evolutionary relationships of eukaryotic kingdoms (1996) (67)
- Probabilistic prediction of unknown metabolic and signal-transduction networks. (2001) (66)
- Mathematical Hierarchies and Biology (1997) (63)
- Machine Science (2010) (63)
- Human Organoids Share Structural and Genetic Features with Primary Pancreatic Adenocarcinoma Tumors (2018) (63)
- Of truth and pathways: chasing bits of information through myriads of articles (2002) (62)
- Emergent behavior of growing knowledge about molecular interactions (2005) (59)
- Towards the Prediction of Complete Protein-Protein Interaction Networks (2001) (58)
- METREE: a program package for inferring and testing minimum-evolution trees (1994) (57)
- Environmental and State-Level Regulatory Factors Affect the Incidence of Autism and Intellectual Disability (2014) (55)
- Microparadigms: chains of collective reasoning in publications about molecular interactions. (2006) (52)
- BioPAX - Biological Pathways Exchange Language Level 2, Version 1.0 Documentation (2005) (50)
- Representing genomic knowledge in the UMLS semantic network (1999) (48)
- Automatically identifying gene/protein terms in MEDLINE abstracts (2002) (48)
- Human and mouse orthologs of a new ATP-binding cassette gene, ABCG4 (2002) (46)
- Novel opportunities for computational biology and sociology in drug discovery. (2010) (45)
- Getting Started in Text Mining: Part Two (2009) (44)
- The BioPAX community standard for pathway data sharing (Nature Biotechnology (2010) 28, (935-942)) (2012) (41)
- Probabilistic inference of molecular networks from noisy data sources (2004) (40)
- Four-cluster analysis: a simple method to test phylogenetic hypotheses. (1995) (39)
- How to Get the Most out of Your Curation Effort (2009) (38)
- Conjunction of factors triggering waves of seasonal influenza (2017) (37)
- Unbiased estimates of the number of nucleotide substitutions when substitution rate varies among different sites (1994) (36)
- Understanding Toxoplasmosis in the United States Through "Large Data" Analyses. (2016) (36)
- Genetic similarity between cancers and comorbid Mendelian diseases identifies candidate driver genes (2015) (34)
- Longitudinal, strain-specific Staphylococcus aureus introduction and transmission events in households of children with community-associated meticillin-resistant S aureus skin and soft tissue infection: a prospective cohort study. (2019) (34)
- A new method for characterizing replacement rate variation in molecular sequences. Application of the Fourier and wavelet models to Drosophila and mammalian proteins. (2000) (32)
- When is it safe to use an oversimplified substitution model in tree-making? (1996) (31)
- Benchmarking Ontologies: Bigger or Better? (2011) (30)
- Ultra-multiplexed analysis of single-cell dynamics reveals logic rules in differentiation (2019) (30)
- Imitating Manual Curation of Text-Mined Facts in Biomedicine (2006) (29)
- Representation of research hypotheses (2011) (29)
- Geographically Resolved Rhythms in Twitter Use Reveal Social Pressures on Daily Activity Patterns (2018) (26)
- Health ROI as a measure of misalignment of biomedical needs and resources (2015) (25)
- Targeting glioblastoma signaling and metabolism with a re-purposed brain-penetrant drug (2021) (24)
- Interplay of personal, pet, and environmental colonization in households affected by community-associated methicillin-resistant Staphylococcus aureus. (2019) (24)
- Conflicting Biomedical Assumptions for Mathematical Modeling: The Case of Cancer Metastasis (2011) (23)
- Looking at Cerebellar Malformations through Text-Mined Interactomes of Mice and Humans (2009) (20)
- Comprehensive modeling reveals proximity, seasonality, and hygiene practices as key determinants of MRSA colonization in exposed households (2018) (19)
- Prevalence of Common Disease Conditions in a Large Cohort of Individuals With Down Syndrome in the United States. (2021) (19)
- Environmental Methicillin-resistant Staphylococcus aureus Contamination, Persistent Colonization, and Subsequent Skin and Soft Tissue Infection. (2020) (17)
- GRIK5 Genetically Regulated Expression Associated with Eye and Vascular Phenomes: Discovery through Iteration among Biobanks, Electronic Health Records, and Zebrafish. (2019) (17)
- Representation of probabilistic scientific knowledge (2013) (17)
- Self-Correcting Maps of Molecular Pathways (2006) (17)
- Estimating heritability and genetic correlations from large health datasets in the absence of genetic data (2019) (16)
- RIDDLE: Race and ethnicity Imputation from Disease history with Deep LEarning (2017) (16)
- A graphic editor for analyzing signal-transduction pathways. (2000) (15)
- Advancing Science through Mining Libraries, Ontologies, and Communities* (2011) (15)
- A distributed look-up architecture for text mining applications using MapReduce (2011) (15)
- Associations between environmental quality and adult asthma prevalence in medical claims data (2018) (15)
- Quantifying the Impact and Extent of Undocumented Biomedical Synonymy (2014) (14)
- Molecular pathogenesis of B-cell chronic lymphocytic leukemia: analysis of 13q14 chromosomal deletions. (2000) (14)
- A distributed look-up architecture for text mining applications using MapReduce (2011) (14)
- Markov Chain Monte Carlo Computation of Confidence Intervals for Substitution-Rate Variation in Proteins (2000) (13)
- Centralized scientific communities are less likely to generate replicable results (2019) (13)
- CHAPTER 3 – HUMAN AND DROSOPHILA ABC PROTEINS (2003) (11)
- Preexisting Type 2 Immune Activation Protects against the Development of Sepsis. (2017) (11)
- The enigma of intron origins (1999) (11)
- War of Ontology Worlds: Mathematics, Computer Code, or Esperanto? (2011) (10)
- Measurable health effects associated with the daylight saving time shift (2020) (9)
- HOME2: Household vs. Personalized Decolonization in Households of Children with Methicillin-Resistant Staphylococcus aureus Skin and Soft Tissue Infection - A Randomized Clinical Trial. (2020) (9)
- Prevalence of Endocrine Disorders Among 6078 Individuals With Down Syndrome in the United States. (2022) (8)
- A recipe for high impact (2007) (8)
- Novel opportunities for computational biology and sociology in drug discovery. (2009) (8)
- Soft Sensing Transformer: Hundreds of Sensors are Worth a Single Word (2021) (8)
- The Big Mechanism Program: Changing How Science Is Done (2016) (7)
- BioRelEx 1.0: Biological Relation Extraction Benchmark (2019) (7)
- Analysis of a 69-kb contiguous genomic sequence at a putative tumor suppressor gene locus on human chromosome 6q27. (1998) (6)
- A Novel Hypothesis Regarding the Evolutionary Origins of the Immunoglobulin Fold (2000) (6)
- Do psychiatric diseases follow annual cyclic seasonality? (2021) (6)
- Six senses in the literature (2008) (6)
- Postnatal immune activation causes social deficits in a mouse model of tuberous sclerosis: Role of microglia and clinical implications (2021) (5)
- Prevalence of Mental Health Conditions Among 6078 Individuals With Down Syndrome in the United States. (2022) (5)
- Prediction of robust scientific facts from literature (2022) (5)
- whole-genome molecular-interaction network Genetic-linkage mapping of complex hereditary disorders to a data (2008) (5)
- Patchwork of contrasting medication cultures across the USA (2017) (5)
- Reconstruction of Phylogenetic Trees and Evolution of Major Histocompatibility Complex Genes (1991) (5)
- Systems Analysis of Human Multigene Disorders (2014) (5)
- Using BLAST, A DNA and Protein Sequence Comparison Tool, for Finding Gene and Protein Names in Journal Articles (2000) (4)
- OrganoID: A versatile deep learning platform for tracking and analysis of single-organoid dynamics (2022) (4)
- Electronic health record phenotypes associated with genetically regulated expression of CFTR and application to cystic fibrosis (2020) (4)
- A rule-based approach for automatically identifying gene and protein names in MEDLINE abstracts (2002) (4)
- A recipe for high impact (2007) (4)
- Prevalence of Infectious Diseases Among 6078 Individuals With Down Syndrome in the United States. (2022) (4)
- Quantitative systems-level determinants of drug targets (2008) (4)
- Observable variations in human sex ratio at birth (2020) (4)
- Assessing dissimilarity of genes by comparing their RNAse A mismatch cleavage patterns. (1996) (3)
- A novel hypothesis regarding the evolutionary origins of the immunoglobulin fold. (2000) (3)
- OrganoID: a versatile deep learning platform for organoid image analysis (2022) (3)
- Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine (2011) (2)
- Testing the reproducibility and robustness of the cancer biology literature by robot (2022) (2)
- Detecting signal from science: The structure of research communities and prior knowledge improves prediction of genetic regulatory experiments (2020) (2)
- Methods in biomedical text mining (2007) (2)
- Discovering and Counting Biomedical Verbs (2010) (2)
- Molecular Fingerprints Are a Simple Yet Effective Solution to the Drug–Drug Interaction Problem (2022) (2)
- Centralized "big science" communities more likely generate non-replicable results (2018) (2)
- The Legionella pneumophila Sequencing Project (2002) (2)
- HOME 2 Study: Household Versus Personalized Decolonization in Households of Children With Methicillin-Resistant Staphylococcus aureus Skin and Soft Tissue Infection—A Randomized Clinical Trial (2020) (2)
- Searching for High-Utility Text in the Biomedical Literature A Preliminary Report (2005) (2)
- Erratum: The BioPAX community standard for pathway data sharing (Nat. Biotechnol. (2010) 28 (935-942) (2010) (2)
- Author response: Centralized scientific communities are less likely to generate replicable results (2019) (1)
- Building Programs to Eradicate Toxoplasmosis Part I: Introduction and Overview (2022) (1)
- Building Programs to Eradicate Toxoplasmosis Part II: Education (2022) (1)
- Building Programs to Eradicate Toxoplasmosis Part IV: Understanding and Development of Public Health Strategies and Advances “Take a Village” (2022) (1)
- Tools for visualization and integration of intermediate sequencing results in large disease gene discovery projects. (1998) (1)
- PLOS Computational Biology 2017 Reviewer and Editorial Board Thank You (2018) (1)
- GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways (2001) (1)
- NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding (2020) (1)
- Systems analysis of human multigene disorders. Preface. (2014) (1)
- Representation of probabilistic scientific knowledge (2013) (1)
- Subject Index Vol. 94, 2001 (2001) (1)
- Seasonal Disease in the United States Has the Hallmarks of an Entrained Circannual Clock (2021) (1)
- Listening to viral tongues: comparing viral trees using a stochastic context-free grammar. (2005) (1)
- Dissecting schizophrenia phenotypic variation: the contribution of genetic variation, environmental exposures, and gene–environment interactions (2022) (1)
- Faculty Opinions recommendation of A plant vacuolar protease, VPE, mediates virus-induced hypersensitive cell death. (2004) (1)
- Discerning asthma endotypes through comorbidity mapping (2022) (1)
- Universal Microfluidic System for Analysis and Control of Cell Dynamics (2017) (1)
- TITLE: Human Organoids Share Structural and Genetic Features with Primary Pancreatic Adenocarcinoma Tumors AUTHOR AND AFFILIATIONS: (2018) (0)
- Understanding the relationship between environmental quality and asthma using claims data (2016) (0)
- Choosing the Next Experiment: Gains and Losses for Scientists and Society (2014) (0)
- Animal Cytogenetics and Comparative Mapping (2002) (0)
- Incidence Measures for Schizophrenia among Commercial Health Insurance and Medicaid Enrollees (2023) (0)
- Data S1. Evaluation of Fluoxetine in Overall Survival of GBM Patients Using Electronic Medical Records from The IBM MarketScan Dataset (2021) (0)
- Understanding Etiology of Complex Neurodevelopmental Disorders: Two Approaches (2011) (0)
- APPENDICES TO THE GUIDELINES FOR ANNOTATION (2006) (0)
- Human Sex Ratio at Birth: Mythical and Observable Trends (2020) (0)
- Lightweight Mobile Automated Assistant-to-physician for Global Lower-resource Areas (2021) (0)
- A Knowledge Model for Analysis and Simulation of Regulatory Based on Information in Electronic Publications (1999) (0)
- Aberystwyth University Representation of research hypotheses (2011) (0)
- Patchwork of contrasting medication cultures across the USA (2018) (0)
- Mythical and Observable Trends in Human Sex Ratio at Birth (2020) (0)
- Peri- and Post-natal Risk Factors Associated with Health of Newborns (2023) (0)
- Text mining for molecular network-based toxicity prediction (2003) (0)
- HOW TO INCREASE THE CONCORDANCE OF THE EXPERIMENTAL DATA FOR QSAR MODELING : CASE STUDY FOR HIV-1 REVERSE TRANSCRIPTASE INHIBITORS (2016) (0)
- Pancreatic adenocarcinoma human organoids share structural and genetic features with primary tumors (2018) (0)
- Free-living wrist and hip accelerometry forecast cognitive decline among older adults without dementia over 1- or 5-years in two distinct observational cohorts (2022) (0)
- NONUS: A No-Onus Platform for Generating Grant Reports (2010) (0)
- Air quality and mental health: evidence, challenges and future directions (2021) (0)
- Evolutionary and Ecological Approaches to Measuring Influence and Impact (2012) (0)
- Mining biomedical texts for disease-related pathways (2006) (0)
- Unweaving regulatory networks: automated extraction from literature and statistical analysis (2002) (0)
- Global and Local Approach of Part-of-Speech Tagging for Large Corpora (2012) (0)
- Faculty Opinions recommendation of Diversity and function of adaptive immune receptors in a jawless vertebrate. (2006) (0)
- The Fifth Georgia Tech - Oak Ridge National Laboratory International Conference in Bioinformatics: in silico Biology, Computational Genomics and Evolutionary Biology (2005) (0)
- TOWARDS THE PREDICTION OF C OM PLETE PROTEIN — PROTEIN INTERAC TION N ETWOR KS (2001) (0)
- WITHDRAWN: Novel opportunities for computational biology and sociology in drug discovery. (2010) (0)
- Building Programs to Eradicate Toxoplasmosis Part III: Epidemiology and Risk Factors (2022) (0)
- Rzhetsky by successful drugs Quantitative systems-level determinants of human genes targeted data (2007) (0)
- Geneways for Biocomputing (2006) (0)
- Bioinformatics: in silico biology, biological networks, from genomics to epidemiology (2003) (0)
- Stability and Conformity in Scientists’ Research Strategies (2012) (0)
- Response by Cokol et al (2007) (0)
- COMPUTATIONAL ANALYSIS AND SIMULATION OF BACTERIAL MOLECULAR NETWORKS (2009) (0)
- Contents Vol. 94, 2001 (2002) (0)
- Gene-environment interactions explain a substantial portion of variability of common neuropsychiatric disorders (2022) (0)
- Fitting models of intron evolution to aldehyde dehydrogenase data (1996) (0)
- Multigene Families: The Problem of Molecular Recapitulation (1992) (0)
- Free-living wrist and hip accelerometry forecast cognitive decline among older adults without dementia over 1- or 5-years in two distinct observational cohorts (2022) (0)
- Faculty Opinions recommendation of Darwinian selection on a selfing locus. (2005) (0)
- African-American Race Predicts 1-Year Cognitive Decline Among Adults Without Moderate Dementia (2021) (0)
- Measuring Novelty: Models of Discovery and Invention (2011) (0)
- Procter and Gamble keynote speech: mining biomedical texts for disease-related pathways (2006) (0)
- Molecular Clocks and the Origin of Animals (1999) (0)
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What Schools Are Affiliated With Andrey Rzhetsky?
Andrey Rzhetsky is affiliated with the following schools:
