Andy Brass | Academic Influence

Andy Brass's AcademicInfluence.com Rankings

Andy Brass

Computer Science

#4533

World Rank

#4783

Historical Rank

Machine Learning

#4856

World Rank

#4913

Historical Rank

Artificial Intelligence

#5423

World Rank

#5497

Historical Rank

Database

#8343

World Rank

#8726

Historical Rank

computer-science Degrees

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Computer Science

Andy Brass's Degrees

PhD Computer Science Stanford University
Masters Computer Science Stanford University
Bachelors Computer Science University of California, Berkeley

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Why Is Andy Brass Influential?

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According to Wikipedia, Andrew M. Brass is a Professor of Bioinformatics at the University of Manchester in the Department of Computer Science and Faculty of Life Sciences. Education Brass was educated at the University of Edinburgh, receiving his PhD on Solid-state physics in 1987.

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Andy Brass's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Investigating Semantic Similarity Measures Across the Gene Ontology: The Relationship Between Sequence and Annotation (2003) (942)
TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources (1998) (441)
Coping with cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate. (2004) (404)
Secondary and tertiary structures of hyaluronan in aqueous solution, investigated by rotary shadowing-electron microscopy and computer simulation. Hyaluronan is a very efficient network-forming polymer. (1991) (295)
Transparent access to multiple bioinformatics information sources (2001) (271)
Semantic Similarity Measures as Tools for Exploring the Gene Ontology (2002) (265)
A systematic approach to modeling, capturing, and disseminating proteomics experimental data (2003) (262)
An ontology for bioinformatics applications (1999) (260)
TAMBIS--Transparent Access to Multiple Bioinformatics Information Sources. (1998) (177)
Making sense of microarray data distributions (2002) (167)
A classification of tasks in bioinformatics (2001) (164)
Hypoxia-inducible myoglobin expression in nonmuscle tissues. (2006) (162)
Exploring Williams-Beuren syndrome using myGrid (2004) (121)
Conceptual modelling of genomic information (2000) (117)
Identification of a key integrin-binding sequence in VCAM-1 homologous to the LDV active site in fibronectin. (1994) (115)
Query processing in the TAMBIS bioinformatics source integration system (1999) (109)
Homology modelling of integrin EF-hands. Evidence for widespread use of a conserved cation-binding site. (1992) (107)
Vulnerability versus resilience to prenatal stress in male and female rats; Implications from gene expression profiles in the hippocampus and frontal cortex (2013) (102)
The Ov20 Protein of the Parasitic Nematode Onchocerca volvulus (1997) (101)
Identification of Novel Genes in Intestinal Tissue That Are Regulated after Infection with an Intestinal Nematode Parasite (2005) (97)
Simple physical model of collagen fibrillogenesis based on diffusion limited aggregation. (1995) (92)
The ABA-1 allergen of the parasitic nematode Ascaris suum: fatty acid and retinoid binding function and structural characterization. (1995) (86)
Novel histamine H3 receptor antagonists GSK189254 and GSK334429 are efficacious in surgically-induced and virally-induced rat models of neuropathic pain (2008) (84)
Searching DNA databases for similarities to DNA sequences: when is a match significant? (1998) (84)
The fibrillar collagens, collagen VIII, collagen X and the C1q complement proteins share a similar domain in their C‐terminal non‐collagenous regions (1992) (83)
Identification of the complete coding sequence and genomic organization of the Treacher Collins syndrome gene. (1997) (82)
Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection (2011) (81)
Bias in the reporting of sex and age in biomedical research on mouse models (2016) (78)
PEDRo: A database for storing, searching and disseminating experimental proteomics data (2004) (77)
A systematic strategy for large-scale analysis of genotype–phenotype correlations: identification of candidate genes involved in African trypanosomiasis (2007) (73)
A Little Semantic Web Goes a Long Way in Biology (2005) (72)
Secondary and tertiary structures involving chondroitin and chondroitin sulphates in solution, investigated by rotary shadowing/electron microscopy and computer simulation. (1992) (67)
Deducing polymeric structure from aqueous molecular dynamics simulations of oligosaccharides: predictions from simulations of hyaluronan tetrasaccharides compared with hydrodynamic and X-ray fibre diffraction data. (1998) (67)
Protein classification using ontology classification (2006) (66)
Quality of Methods Reporting in Animal Models of Colitis (2015) (66)
A statistical analysis of murine incisional and excisional acute wound models (2014) (66)
Oligosaccharides as model systems for understanding water- biopolymer interaction: Hydrated dynamics of a hyaluronan decamer (2000) (60)
The circadian regulator BMAL1 programmes responses to parasitic worm infection via a dendritic cell clock (2018) (58)
Pleiotropic effects of negative energy balance in the postpartum dairy cow on splenic gene expression: repercussions for innate and adaptive immunity (2009) (58)
Dynamic exchange between stabilized conformations predicted for hyaluronan tetrasaccharides: comparison of molecular dynamics simulations with available NMR data. (1998) (58)
Mechanisms Controlling Anaemia in Trypanosoma congolense Infected Mice (2009) (58)
Structure/function of the human glucocorticoid receptor: tyrosine 735 is important for transactivation. (1999) (58)
Ultradian Cortisol Pulsatility Encodes a Distinct, Biologically Important Signal (2011) (57)
Rapid real time PCR to distinguish between high risk human papillomavirus types 16 and 18 (2001) (54)
Analysis of the transcriptome of the protozoan Theileria parva using MPSS reveals that the majority of genes are transcriptionally active in the schizont stage (2005) (54)
Molecular dynamics simulations of the two disaccharides of hyaluronan in aqueous solution. (1997) (52)
Comparison of TFII‐I gene family members deleted in Williams‐Beuren syndrome (2004) (51)
Isolation and characterisation of GTF2IRD2, a novel fusion gene and member of the TFII-I family of transcription factors, deleted in Williams–Beuren syndrome (2004) (50)
Detection of herpes viruses in clinical samples using real-time PCR. (2001) (48)
Apoptosis signals in atopy and asthma measured with cDNA arrays (2001) (48)
Differential gene expression in a rat model of depression based on persistent differences in exploratory activity (2010) (45)
A Survey of Bioinformatics Database and Software Usage through Mining the Literature (2016) (44)
A model-based analysis of microarray experimental error and normalisation. (2003) (43)
Hybrid Monte Carlo: An efficient algorithm for condensed matter simulation (1994) (42)
Type I procollagens containing substitutions of aspartate, arginine, and cysteine for glycine in the pro alpha 1 (I) chain are cleaved slowly by N-proteinase, but only the cysteine substitution introduces a kink in the molecule. (1992) (42)
The mechanical properties of simulated collagen fibrils. (1997) (42)
A secondary structure model of the integrin alpha subunit N-terminal domain based on analysis of multiple alignments. (1994) (41)
Compositional Changes in the Gut Mucus Microbiota Precede the Onset of Colitis-Induced Inflammation (2017) (41)
A cDNA encoding repeating units of the ABA-1 allergen of Ascaris. (1993) (41)
Metaphyseal Chondrodysplasia Type Schmid Mutations Are Predicted to Occur in Two Distinct Three-dimensional Clusters within Type X Collagen NC1 Domains That Retain the Ability to Trimerize* (1999) (39)
On the threshold pinning force in type II superconducting films (1989) (38)
Lattice models of protein folding. (1995) (37)
maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination (2005) (36)
Constructing ontology-driven protein family databases (2005) (36)
INTERACT: An Object Oriented Protein-Protein Interaction Database (1999) (35)
Glucocorticoid receptor isoforms direct distinct mitochondrial programs to regulate ATP production (2016) (35)
A RAPID algorithm for sequence database comparisons: application to the identification of vector contamination in the EMBL databases (1999) (35)
GIMS-a data warehouse for storage and analysis of genome sequence and functional data (2001) (34)
Strong position-dependent effects of sequence mismatches on signal ratios measured using long oligonucleotide microarrays (2008) (34)
Recent developments in biological sequence databases. (1998) (33)
bioNerDS: exploring bioinformatics’ database and software use through literature mining (2013) (29)
Bioinformatics Education-A UK perspective (2000) (29)
Pedro: a configurable data entry tool for XML (2004) (27)
A systematic strategy for the discovery of candidate genes responsible for phenotypic variation (2007) (26)
Genetic analysis of the Trichuris muris-induced model of colitis reveals QTL overlap and a novel gene cluster for establishing colonic inflammation (2013) (25)
Gut eosinophils and their impact on the mucus‐resident microbiota (2019) (25)
Interactions between Small Amphipathic Molecules and Proteins (1991) (25)
Complex Query Formulation Over Diverse Information Sources in TAMBIS (2003) (24)
Annotation of environmental OMICS data: application to the transcriptomics domain. (2006) (23)
Hardy-Weinberg Equilibrium in the Large Scale Genomic Sequencing Era (2019) (21)
GeVIR is a continuous gene-level metric that uses variant distribution patterns to prioritize disease candidate genes (2019) (21)
Claudin 13, a Member of the Claudin Family Regulated in Mouse Stress Induced Erythropoiesis (2010) (20)
PhosphaBase: An ontology‐driven database resource for protein phosphatases (2004) (20)
Gene expression profiling in a mouse model for African trypanosomiasis (2006) (20)
Novel SNP Discovery in African Buffalo, Syncerus caffer, Using High-Throughput Sequencing (2012) (19)
Mutagenic and chemical modification of the ABA-1 allergen of the nematode Ascaris: consequences for structure and lipid binding properties. (2001) (18)
In silico design of a T-cell epitope vaccine candidate for parasitic helminth infection (2019) (16)
The Quality of Methods Reporting in Parasitology Experiments (2014) (14)
A study of parallel molecular dynamics algorithms for N-body simulations on a transputer system (1990) (14)
A Comprehensive Genetic Analysis of Candidate Genes Regulating Response to Trypanosoma congolense Infection in Mice (2010) (14)
Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference (2014) (14)
The language of gene ontology: a Zipf’s law analysis (2012) (14)
Britain Breathing: using the experience sampling method to collect the seasonal allergy symptoms of a country (2017) (12)
Molecular dynamics study of the defect behaviour in fluorite structure crystals close to the superionic transition (1989) (12)
Extracting patterns of database and software usage from the bioinformatics literature (2014) (12)
Differential gene expression in mutant mice overexpressing or deficient in the serotonin transporter: A focus on urocortin 1 (2011) (11)
Genotype and expression analysis of two inbred mouse strains and two derived congenic strains suggest that most gene expression is trans regulated and sensitive to genetic background (2010) (11)
Taming EHR data: Using Semantic Similarity to reduce Dimensionality (2013) (11)
The aromatic zipper: a model for the initial trimerization event in collagen folding. (1991) (11)
Educating international students about tuberculosis and infections associated with travel to visit friends and relatives (VFR-travel). (2014) (11)
Problem-based learning in clinical bioinformatics education: Does it help to create communities of practice? (2019) (11)
A systematic, data-driven approach to the combined analysis of microarray and QTL data. (2008) (10)
A cellular automata model for helper T cell subset polarization in chronic and acute infection. (1994) (10)
Clinical Chemistry of Congenic Mice with Quantitative Trait Loci for Predicted Responses to Trypanosoma congolense Infection (2009) (9)
Database Challenges for Genome Information in the Post Sequencing Phase (1999) (9)
Cage and maternal effects on the bacterial communities of the murine gut (2021) (9)
The role of β2 integrin in dendritic cell migration during infection (2021) (8)
Computer simulations of flux pinning and flux flow in two dimensions (1989) (8)
Using Ontology Reasoning to Classify Protein Phosphatases (2005) (8)
Clustering Techniques in Biological Sequence Analysis (1997) (8)
Progressive lung cancer determined by expression profiling and transcriptional regulation. (2012) (8)
Data Journey Modelling: Predicting Risk for IT Developments (2016) (7)
Data journeys: Identifying social and technical barriers to data movement in large, complex organisations (2017) (7)
In silico design of a T-cell epitope vaccine candidate for parasitic helminth infection. (2020) (6)
The conformations of hyaluronan in aqueous solution: comparison of theory and experiment. (1999) (6)
Differential Expression of Soluble Receptor for Advanced Glycation End-products in Mice Susceptible or Resistant to Chronic Colitis (2019) (6)
Accelerating Disease Gene Identification Through Integrated SNP Data Analysis (2007) (5)
TAMBIS: transparent access to multiple bioinformatics services (2005) (5)
Protein secondary structure prediction by the analysis of variation and conservation in multiple alignments (1995) (5)
Highlights from the Third International Society for Computational Biology ( ISCB ) Student Council Symposium at the Fifteenth Annual International Conference on Intelligent Systems for Molecular Biology ( ISMB ) Vienna , Austria 21 July 2007 (2007) (5)
A Blockchain-Based Dynamic Consent Architecture to Support Clinical Genomic Data Sharing (ConsentChain): Proof-of-Concept Study. (2021) (5)
Statistical mechanics of ontology based annotations (2016) (5)
Glucocorticoids rapidly inhibit cell migration through a novel, non-transcriptional HDAC6 pathway (2020) (5)
Molecular dynamics simulations on a parallel computer, plastic crystals and related systems (1985) (5)
Artificial intelligence projects in healthcare: 10 practical tips for success in a clinical environment (2021) (4)
TAMBIS Online: a bioinformatics source integration tool (1999) (4)
repercussions for innate and adaptive immunity postpartum dairy cow on splenic gene expression : Pleiotropic effects of negative energy balance in the (2009) (4)
Complex Query Formulation Over Diverse Information Sources Using an Ontology (2007) (4)
Correction for Fraser et al., Hypoxia-inducible myoglobin expression in nonmuscle tissues (2006) (3)
Prevention of SARS-CoV-2 (COVID-19) transmission in residential aged care using ultraviolet light (PETRA): a two-arm crossover randomised controlled trial protocol (2021) (3)
Glucocorticoids stabilise the microtubule network to inhibit cell migration (2015) (3)
9 Transcript Analysis: A Microarray Approach (2007) (3)
Processing online crop disease warning information via sensor networks using ISA ontologies. (2013) (3)
Instabilities and Correlations of an Elastic Lattice in a Random Potential (1993) (3)
Understanding the development and function of the gut microbiota in health and inflammation (2022) (3)
Glucocorticoids rapidly inhibit cell migration through a novel, non-transcriptional HDAC6 pathway. (2020) (3)
#BritainBreathing: Codesigned citizen science to map seasonal allergy symptoms across the UK (2017) (2)
A blockchain-based framework to support pharmacogenetic data sharing (2022) (2)
Weak Classifiers Performance Measure in Handling Noisy Clinical Trial Data (2016) (2)
Modeling Data Journeys to Inform the Digital Transformation of Kidney Transplant Services: Observational Study (2022) (2)
Light Touch Identification of Cost/Risk in Complex Socio-Technical Systems (2017) (2)
Genomics approaches to study the biology underlying resistance to trypanosomiasis--some unexpected lessons. (2008) (2)
ExprAlign - the identification of ESTs in non-model species by alignment of cDNA microarray expression profiles (2009) (2)
Genome Science performed with e-Science Tools (2004) (2)
TIGERi: modeling and visualizing the responses to perturbation of a transcription factor network (2017) (1)
bioNerDS: exploring bioinformatics’ database and software use through literature mining (2013) (1)
Taverna workflows for systems biology (2006) (1)
vOX2- a potential immune regulatory protein involved in Kaposi's sarcoma-associated herpesvirus pathogenesis (2004) (1)
Genetic analysis of the Trichuris muris-induced model of colitis reveals QTL overlap and a novel gene cluster for establishing colonic inflammation (2013) (1)
Theoretical Approaches to Peptide Drug Design (1991) (1)
The language of gene ontology: a Zipf’s law analysis (2012) (1)
Robust normalization of microarray data over multiple experiments (1999) (1)
{TAMBIS}: {T}ransparent {A}ccess to {M}ultiple {B}ioinformatics {I}nformation {S}ources. An Overview (1998) (1)
Identification of gene networks associated with anaemia caused by Trypanosoma congolense (2006) (1)
Monte Carlo study of the specific heat and magnetization of a random three-dimensional cluster of Josephson coupled superconducting grains (1991) (1)
Mechanism of integrin α4β1-VCAM-1 interaction (1993) (1)
Educating the Healthcare Workforce to Support Digital Transformation (2022) (1)
A MODEL OF TYPE I COLLAGEN FIBRILLOGENESIS BASED ON DIFFUSION LIMITED AGGREGATION (1995) (0)
Identifying candidate genes for the regulation of the response to Trypanosoma congolense infection (2008) (0)
DNA microarray normalisation , PCA and a related latent variable model (2001) (0)
Mechanism of integrin alpha 4 beta 1-VCAM-1 interaction. (1993) (0)
SNP discovery in African taurine and Zebu cattle by whole genome sequencing of pooled DNA (2010) (0)
Challenges in Genomic Privacy : An Analysis of Surname Attacks in the Population of Britain 1 Sahel (2017) (0)
A Blockchain-Based Dynamic Consent Architecture to Support Clinical Genomic Data Sharing (ConsentChain): Proof-of-Concept Study (Preprint) (2021) (0)
Fibrillin eight-cysteine motifs: Model-ling and structural analysis (1996) (0)
BLOCKCHAIN-BASED DYNAMIC CONSENT MODEL TO SUPPORT GENOMIC DATA SHARING IN CLINICAL INFORMATICS (2019) (0)
Joint-venture, capitation model can strengthen market share. (1991) (0)
Congenic mice infected with Trypanosoma congolense (2007) (0)
GeVIR is a continuous gene-level metric that uses variant distribution patterns to prioritize disease candidate genes (2019) (0)
Formulation Over Diverse Information Sources in TAMBIS (1999) (0)
Distinct microbial communities in the murine gut are revealed by taxonomy-independent phylogenetic random forests (2019) (0)
Generation of a novel HIV Gag’microcube’ vaccine that elicits strong cellular and humoral immune response (2011) (0)
The wild mouse bone marrow has a unique myeloid and lymphoid composition and phenotype (2023) (0)
TIGERi: modeling and visualizing the responses to perturbation of a transcription factor network (2017) (0)
Computer simulations of the effect of glycosylation on the conformational freedom of peptides. (1991) (0)
PWE-098 Mechanisms the Underlying Development of Chronic Inflammation in Inflammatory Bowel Disease: Defining the Role of the Rage Pathway Using Computational and Biological Analysis Strategies (2013) (0)
Health Education Regarding Tuberculosis and VFR-Travel for International Students in Victoria (2012) (0)
Targeted reduction of airborne viral transmission risk in long-term residential aged care. (2022) (0)
Virus Infection and Immune Related Diseases (2013) (0)
The role of β2 integrin in dendritic cell migration during infection (2021) (0)
Molecular dynamics simulations of fluorite structure crystals (1987) (0)
The transcription factor basal regulatory network of Homo sapiens and Saccharomyces cerevisiae: uncovering the relationship between topology and phenotype (2019) (0)
Databases of genotoxicity and carcinogenicity and their usefulness for hazard evaluation. (1991) (0)
Mummies on rails (2014) (0)
Role of plasma lipids in the susceptibility of laboratory mice to trypanosomosis (2006) (0)
Systems biology reveals a novel mechanism regulating glucocorticoid action (2011) (0)
Mismatches between probe and target sequences have a strong position-dependent effect on signal ratios from aCGH using 60mer oligonucleotide microarrays (2000) (0)
{C}omplex {Q}uery {F}ormulation {O}ver {D}iverse {I}nformation {S}ources {U}sing an {O}ntology (1999) (0)
Genome wide expression consequences of a disease resistance QTL are strongly influenced by the genetic background (2008) (0)
Building Workflows that Traverse the Bioinformatics Data Landscape (2009) (0)
Secondary structure of a fibrillin-1 eight-cysteine motif. (1998) (0)
Congenic mice reveal effect of SNP, genomic rearrangements and expression variation on genome wide gene expression (2007) (0)
Evidence for Pairing of Semions in Finite Systems (1990) (0)
The Role of Cholesterol in the Pathology of African Animal Trypanosomiasis (2006) (0)
Glucocorticoids rapidly inhibit cell migration through a novel, non-transcriptional pathway involving HDAC6 (2017) (0)
Identification of falls subgroups through semantic similarity analysis (2017) (0)
Genomics approaches To trypanosomiasis resistance (2008) (0)
Differential gene expression in rats with persistently high and low exploratory activity (2008) (0)
Rapid, cytoplasmic actions of the glucocorticoid receptor impact on cell movement (2018) (0)
Supplementary Materials S1 (2011) (0)
THU0002 Comparison of Pathways Implicated in Anti-Citrillunated Peptide Antibody Positive and Negative Rheumatoid Arthritis Patients (2013) (0)

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