Anna Tramontano

Q: What Schools Are Affiliated With Anna Tramontano

Anna Tramontano is affiliated with the following schools: University of California, Davis, University of Padua, Sapienza University of Rome, University of Naples Federico II

Anna Tramontano's AcademicInfluence.com Rankings

Anna Tramontano

Biology

#2915

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#4545

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Computational Biology

#82

World Rank

#82

Historical Rank

biology Degrees

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Biology

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According to Wikipedia, Anna Tramontano was an Italian computational biologist and chair professor of biochemistry at the Sapienza University of Rome. From 2011 to 2014 she was a member of the Scientific Council of the European Research Council . She was an associate editor for the journal Bioinformatics from 2005 until 2016 editing papers in the area of structural bioinformatics.

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Anna Tramontano's Published Works

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Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA (2011) (1981)
Conformations of immunoglobulin hypervariable regions (1989) (1112)
Critical assessment of methods of protein structure prediction (CASP)—round IX (2011) (687)
A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA (2011) (421)
Critical assessment of methods of protein structure prediction (CASP) — round x (2014) (410)
Critical assessment of methods of protein structure prediction (CASP)—Round XII (2018) (345)
Critical assessment of methods of protein structure prediction—Round VII (2007) (342)
Conformations of the third hypervariable region in the VH domain of immunoglobulins. (1998) (327)
An expanded evaluation of protein function prediction methods shows an improvement in accuracy (2016) (316)
The PMDB Protein Model Database (2005) (285)
Remarkably similar antigen receptors among a subset of patients with chronic lymphocytic leukemia. (2004) (256)
Mimicking of discontinuous epitopes by phage-displayed peptides, I. Epitope mapping of human H ferritin using a phage library of constrained peptides. (1993) (229)
Framework residue 71 is a major determinant of the position and conformation of the second hypervariable region in the VH domains of immunoglobulins. (1990) (228)
The implications of alternative splicing in the ENCODE protein complement (2007) (227)
A model for the hepatitis C virus envelope glycoprotein E2 (2000) (226)
Critical assessment of methods of protein structure prediction: Progress and new directions in round XI (2016) (220)
Binding of the Hepatitis C Virus E2 Glycoprotein to CD81 Is Strain Specific and Is Modulated by a Complex Interplay between Hypervariable Regions 1 and 2 (2003) (207)
Protein function annotation by homology-based inference (2009) (197)
Assessment of homology‐based predictions in CASP5 (2003) (187)
Critical assessment of methods of protein structure prediction—Round VIII (2009) (184)
PIGS: automatic prediction of antibody structures (2008) (155)
Towards a solution for hepatitis C virus hypervariability: mimotopes of the hypervariable region 1 can induce antibodies cross‐reacting with a large number of viral variants (1998) (155)
Evaluation of template‐based models in CASP8 with standard measures (2009) (153)
A designed metal-binding protein with a novel fold (1993) (153)
Interactive program for visualization and modelling of proteins, nucleic acids and small molecules (1986) (146)
Assessment of protein disorder region predictions in CASP10 (2014) (145)
The Snail repressor recruits EZH2 to specific genomic sites through the enrollment of the lncRNA HOTAIR in epithelial-to-mesenchymal transition (2016) (141)
Reduction of .alpha.,.beta.-acetylenic ketones with B-3-pinanyl-9-borabicyclo[3.3.1]nonane. High asymmetric induction in aliphatic systems (1980) (141)
Analysis and assessment of comparative modeling predictions in CASP4 (2001) (132)
Cloning and analysis of Candida cylindracea lipase sequences. (1993) (131)
Evolution of Bacterial and Archaeal Multicomponent Monooxygenases (2003) (131)
Assessment of the assessment: Evaluation of the model quality estimates in CASP10 (2014) (128)
Identification of biologically active peptides using random libraries displayed on phage. (1995) (122)
Assessment of predictions in the model quality assessment category (2007) (120)
Antibody modeling: implications for engineering and design. (2000) (117)
Evaluation of disorder predictions in CASP9 (2011) (117)
Monoclonal antibody light chain with prothrombinase activity. (2000) (109)
Total synthesis of the quinonoid alcohol dehydrogenase coenzyme (1) of methylotrophic bacteria (1981) (109)
Critical assessment of methods of protein structure prediction (CASP)—Round 6 (2005) (106)
Enzyme mimicry by the antiidiotypic antibody approach. (2000) (103)
A stereospecific cyclization catalyzed by an antibody. (1987) (102)
Endocytosis of synaptic ADAM10 in neuronal plasticity and Alzheimer's disease. (2013) (101)
Molecular model of the specificity pocket of the hepatitis C virus protease: implications for substrate recognition. (1994) (98)
Substrate Specificity of the Hepatitis C Virus Serine Protease NS3* (1997) (96)
A zinc binding site in viral serine proteinases. (1996) (96)
Chiral trialkylborane reducing agents. Preparation of 1-deuterio primary alcohols of high enantiomeric purity (1979) (96)
Variability within the Candida rugosa lipases family. (1994) (95)
PUZZLE: a new method for automated protein docking based on surface shape complementarity. (1994) (95)
Small molecule inhibitors of histone arginine methyltransferases: homology modeling, molecular docking, binding mode analysis, and biological evaluations. (2007) (94)
Asymmetric reductions of propargyl ketones : An effective approach to the synthesis of optically-active compounds (1984) (92)
New encouraging developments in contact prediction: Assessment of the CASP11 results (2016) (91)
Evaluation of residue–residue contact predictions in CASP9 (2011) (91)
Novel Long Noncoding RNAs (lncRNAs) in Myogenesis: a miR-31 Overlapping lncRNA Transcript Controls Myoblast Differentiation (2014) (90)
Evaluation of model quality predictions in CASP9 (2011) (89)
Chemical reactivity at an antibody binding site elicited by mechanistic design of a synthetic antigen. (1986) (88)
Stereotyped patterns of B-cell receptor in splenic marginal zone lymphoma (2010) (88)
Evaluation of residue–residue contact prediction in CASP10 (2014) (87)
Evaluation of annotation strategies using an entire genome sequence (2003) (86)
Cancer-Selective Targeting of the NF-κB Survival Pathway with GADD45β/MKK7 Inhibitors (2014) (84)
Antibody catalysis approaching the activity of enzymes (1988) (83)
Evaluation of CASP8 model quality predictions (2009) (79)
Homology modeling with low sequence identity. (1998) (78)
Accurate energies of hydrogen bonded nucleic acid base pairs and triplets in tRNA tertiary interactions (2006) (75)
On the Mechanism of Chloroquine Resistance in Plasmodium falciparum (2010) (75)
Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server (2013) (74)
Antibodies as enzymes (1987) (74)
Mg2+ binding and archaeosine modification stabilize the G15 C48 Levitt base pair in tRNAs. (2007) (74)
Members of the zinc finger protein gene family sharing a conserved N-terminal module. (1991) (74)
Methods of model accuracy estimation can help selecting the best models from decoy sets: Assessment of model accuracy estimations in CASP11 (2016) (73)
Structural determinants of the conformations of medium‐sized loops in proteins (1989) (73)
The association of heavy and light chain variable domains in antibodies: implications for antigen specificity (2011) (73)
Synthesis of alkyl 4-hydroxy-2-alkynoates (1980) (73)
Probing the tertiary structure of proteins by limited proteolysis and mass spectrometry: The case of minibody (1996) (72)
Molecular cloning of a proteolytic antibody light chain. (1994) (70)
Saturation mutagenesis of the human interleukin 6 receptor-binding site: implications for its three-dimensional structure. (1993) (70)
Bacteriophage lambda display of complex cDNA libraries: a new approach to functional genomics. (2000) (69)
Antibody structure, prediction and redesign. (1997) (69)
Combinatorial antibody library from multiple sclerosis patients reveals antibodies that cross‐react with myelin basic protein and EBV antigen (2011) (67)
Evaluating the usefulness of protein structure models for molecular replacement (2005) (65)
Common features of the conformations of antigen‐binding loops in immunoglobulins and application to modeling loop conformations (1992) (64)
Genome sequences and great expectations (2000) (62)
Phosphonate Ester Probes for Proteolytic Antibodies* (2001) (62)
The nonstructural proteins of the hepatitis C virus: structure and functions. (1997) (61)
Assessment of model accuracy estimations in CASP12 (2018) (61)
Early treatment with ursodeoxycholic acid for cholestasis in children on parenteral nutrition because of primary intestinal failure (2006) (61)
A model for recognition of polychlorinated dibenzo-p-dioxins by the aryl hydrocarbon receptor. (2002) (60)
Coordinated and reversible reduction of enzymes involved in terminal oxidative metabolism in skeletal muscle mitochondria from a riboflavin‐responsive, multiple acyl‐CoA dehydrogenase deficiency patient (2006) (57)
Relationship between multiple sequence alignments and quality of protein comparative models (2004) (53)
Massive screening of copy number population-scale variation in Bos taurus genome (2013) (51)
SAP97-mediated ADAM10 trafficking from Golgi outposts depends on PKC phosphorylation (2014) (51)
Evaluation of the template‐based modeling in CASP12 (2018) (51)
The betaI/betaIII-tubulin isoforms and their complexes with antimitotic agents. Docking and molecular dynamics studies. (2006) (50)
Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites (2010) (49)
Genome-wide identification of direct HBx genomic targets (2017) (49)
Protein Structure Prediction: Concepts and Applications (2006) (48)
Temporal study of immunoglobin M seroreactivity to Borrelia burgdorferi in patients treated for Lyme borreliosis (1997) (48)
Total synthesis of bongkrekic acid (1984) (47)
PIGSPro: prediction of immunoGlobulin structures v2 (2017) (46)
LSD1: more than demethylation of histone lysine residues (2020) (46)
High level expression and rational mutagenesis of a designed protein, the minibody. From an insoluble to a soluble molecule. (1994) (46)
The ten most wanted solutions in protein bioinformatics (2005) (45)
Site‐directed enzymatic PEGylation of the human granulocyte colony‐stimulating factor (2009) (45)
Preparation of optically active benzyl-.alpha.-d alcohol via reduction by B-3.alpha.-pinanyl-9-borabicyclo[3.3.1]nonane. A new highly effective chiral reducing agent (1977) (45)
Antibody catalysis of bimolecular amide formation (1988) (45)
Reactibodies generated by kinetic selection couple chemical reactivity with favorable protein dynamics (2011) (44)
Surface topology of Minibody by selective chemical modifications and mass spectrometry (1997) (43)
Exploring the Cytochrome c Folding Mechanism (2003) (43)
FIDEA: a server for the functional interpretation of differential expression analysis (2013) (42)
Intramolecular epitope spreading in Heymann nephritis. (2007) (42)
PepComposer: computational design of peptides binding to a given protein surface (2016) (42)
Classification of proteins based on the properties of the ligand‐binding site: The case of adenine‐binding proteins (2002) (41)
Yeast as a model of human mitochondrial tRNA base substitutions: investigation of the molecular basis of respiratory defects. (2007) (41)
Analysis of a cDNA sequence encoding the immunoglobulin heavy chain of the Antarctic teleost Trematomus bernacchii. (2000) (39)
The synthesis of naturally occurring 4-alkyl- and 4-alkenyl-γ-lactones using the asymmetric reducing agent B-3-pinanyl-9-borabicyclo[3.3.1]nonane (1980) (39)
A database of immunoglobulins with integrated tools: DIGIT (2011) (39)
Engineering stable cytoplasmic intrabodies with designed specificity. (2003) (39)
All-Atom Molecular Dynamics Simulation of Protein Translocation through an α-Hemolysin Nanopore. (2015) (38)
Prevalence of sarcopenia and associated factors in the healthy older adults of the Peruvian Andes. (2017) (37)
Routes to covalent catalysis by reactive selection for nascent protein nucleophiles. (2007) (37)
The prediction of protein function at CASP6 (2005) (37)
Antibody modeling using the Prediction of ImmunoGlobulin Structure (PIGS) web server (2014) (37)
Structural repertoire of immunoglobulin λ light chains (2011) (36)
Idiopathic membranous nephropathy: an autoimmune disease. (2011) (36)
Mapping epitopes on protein surfaces. (1995) (34)
Ten Simple Rules for Developing a Short Bioinformatics Training Course (2011) (34)
FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures (2008) (34)
The role of molecular modelling in biomedical research (2006) (33)
B-alkyl-9-borabicyclo[3.3.1]nonanes as mild, chemoselective reducing agents for aldehydes (1978) (32)
A proangiogenic peptide derived from vascular endothelial growth factor receptor-1 acts through alpha5beta1 integrin. (2008) (32)
Investigation of a potential mechanism for the inhibition of SmTGR by Auranofin and its implications for Plasmodium falciparum inhibition. (2012) (30)
Coding potential of the products of alternative splicing in human (2011) (29)
Multistep current signal in protein translocation through graphene nanopores. (2015) (29)
3USS: a web server for detecting alternative 3′UTRs from RNA-seq experiments (2015) (29)
The making of the minibody: An engineered β‐protein for the display of conformationally constrained peptides (1994) (29)
Spontaneous hydrolysis of vasoactive intestinal peptide in neutral aqueous solution. (2009) (29)
Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies (2014) (28)
Molecular evolution of a gene cluster of serine proteases expressed in the Anopheles gambiae female reproductive tract (2011) (28)
Impact of antisecretory treatment on respiratory symptoms of gastroesophageal reflux disease in children. (2012) (28)
Mutations of Gly to Ala in human glutathione transferase P1-1 affect helix 2 (G-site) and induce positive cooperativity in the binding of glutathione. (1998) (28)
Of men and machines (2003) (28)
The reaction of B-alkyl-9-borabicyclo[3.3.1]nonanes with aldehydes and ketones. A facile elimination of the alkyl group by aldehydes (1978) (28)
Identification and functional characterization of the bile acid transport proteins in non‐mammalian ileum and mammalian liver (2007) (27)
Mimotopes of the hyper variable region 1 of the hepatitis C virus induce cross-reactive antibodies directed against discontinuous epitopes. (2001) (27)
Antibody structural modeling with prediction of immunoglobulin structure (PIGS) (2014) (26)
Tabhu: tools for antibody humanization (2014) (26)
The MEPS server for identifying protein conformational epitopes (2007) (26)
Superposition-free comparison and clustering of antibody binding sites: implications for the prediction of the nature of their antigen (2017) (25)
An automatic method for identifying surface proteins in bacteria: SLEP (2010) (25)
Nested N-terminal megalin fragments induce high-titer autoantibody and attenuated Heymann nephritis. (2006) (24)
Proteolytic antibodies: origins, selection and induction. (2000) (24)
Automatic procedure for using models of proteins in molecular replacement (2006) (24)
Protein design on computers. Five new proteins: Shpilka, grendel, fingerclasp, leather, and aida (1992) (23)
Nutritional status, physical performance and disability in the elderly of the Peruvian Andes (2016) (23)
Identification of a novel putative mitogen-activated kinase cascade on human chromosome 21 by computational approaches (2006) (22)
LoopIng: a template-based tool for predicting the structure of protein loops (2015) (22)
An analysis of the Sargasso Sea resource and the consequences for database composition (2006) (22)
Inhibition of endothelial cell migration and angiogenesis by a vascular endothelial growth factor receptor-1 derived peptide. (2008) (22)
Igs Expressed by Chronic Lymphocytic Leukemia B Cells Show Limited Binding-Site Structure Variability (2013) (22)
Antibody-catalyzed redox reaction (1989) (22)
Impact of the Rome II paediatric criteria on the appropriateness of the upper and lower gastrointestinal endoscopy in children (2010) (21)
Update on protein structure prediction: results of the 1995 IRBM workshop. (1996) (21)
EGFR activation triggers cellular hypertrophy and lysosomal disease in NAGLU-depleted cardiomyoblasts, mimicking the hallmarks of mucopolysaccharidosis IIIB (2018) (21)
Ambulatory blood pressure monitoring in elderly patients with chronic atrial fibrillation: is it absolutely contraindicated or a useful tool in clinical practice and research? (2013) (21)
Structural definition by antibody engineering of an idiotypic determinant. (1990) (21)
MD and Docking Studies Reveal That the Functional Switch of CYFIP1 is Mediated by a Butterfly-like Motion. (2015) (20)
Prediction of the permeability of neutral drugs inferred from their solvation properties (2015) (20)
Structural conservation in single-domain proteins: implications for homology modeling. (2001) (20)
Ten years of predictions … and counting (2005) (19)
Selection of Functional Variants of the NS3-NS4A Protease of Hepatitis C Virus by Using Chimeric Sindbis Viruses (1999) (19)
Analysis of Hepatitis C Virus Hypervariable Region 1 Sequence from Cryoglobulinemic Patients and Associated Controls (2007) (19)
The assessment of methods for protein structure prediction. (2008) (18)
Conformation and Glycosylation of a Megalin Fragment Correlate with Nephritogenicity in Heymann Nephritis 1 (2004) (18)
Revisiting the prediction of protein function at CASP6 (2006) (17)
Production of antibodies that mimic enzyme catalytic activity. (1989) (17)
Reliability of Oscillometric Blood Pressure Monitoring in Atrial Fibrillation Patients Admitted for Electric Cardioversion (2015) (17)
Nucleophilic proteolytic antibodies (2000) (17)
Modelling and molecular dynamics of the interaction between the E3 ubiquitin ligase Itch and the E2 UbcH7. (2008) (17)
Digestive peptidase evolution in holometabolous insects led to a divergent group of enzymes in Lepidoptera. (2015) (16)
RNA Stabilizes Transcription-Dependent Chromatin Loops Induced By Nuclear Hormones (2019) (16)
Probability of coding of a DNA sequence: an algorithm to predict translated reading frames from their thermodynamic characteristics (1986) (16)
The Evaluation of Protein Structure Prediction Results (2008) (16)
Novel Cinnamyl Hydroxyamides and 2‐Aminoanilides as Histone Deacetylase Inhibitors: Apoptotic Induction and Cytodifferentiation Activity (2011) (16)
A structural view of microRNA–target recognition (2016) (16)
A model of the complex between the PfEMP1 malaria protein and the human ICAM‐1 receptor (2007) (16)
Inhibition and labeling of enzymes and abzymes by phosphonate diesters (2000) (16)
MAISTAS: a tool for automatic structural evaluation of alternative splicing products (2011) (16)
Targeted DNA oxidation by LSD1–SMAD2/3 primes TGF-β1/ EMT genes for activation or repression (2020) (15)
Aminoacylation and conformational properties of yeast mitochondrial tRNA mutants with respiratory deficiency. (2005) (15)
Identification of the Schistosoma mansoni Molecular Target for the Antimalarial Drug Artemether (2011) (15)
Hepatitis C virus proteins as targets for drug development: the role of bioinformatics and modelling. (2002) (14)
Rational design and functional expression of a constitutively active single-chain NS4A-NS3 proteinase. (1998) (14)
Advances and pitfalls in protein structure prediction. (2008) (14)
Multiligand interactions at the combining site of anti-fluorescyl antibodies. Molecular recognition and connectivity (1989) (14)
In Vivo Selection of Protease Cleavage Sites by Using Chimeric Sindbis Virus Libraries (2000) (14)
MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships (2013) (14)
A structure-guided approach to an orthogonal estrogen-receptor-based gene switch activated by ligands suitable for in vivo studies. (2006) (13)
Immune recognition, antigen design, and catalytic antibody production (1994) (13)
Characterization of the differences in the cyclopiazonic acid binding mode to mammalian and P. Falciparum Ca2+ pumps: A computational study (2015) (13)
Simulation of urea-induced protein unfolding: a lesson from bovine β-lactoglobulin. (2011) (13)
Rapid Profiling of the Antigen Regions Recognized by Serum Antibodies Using Massively Parallel Sequencing of Antigen-Specific Libraries (2014) (13)
Dissecting the Structural Determinants of the Interaction between the Human Cytomegalovirus UL18 Protein and the CD85j Immune Receptor1 (2008) (12)
Mapping the hydropathy of amino acids based on their local solvation structure. (2014) (12)
Genome-wide RNA-seq analysis indicates that the DAG1 transcription factor promotes hypocotyl elongation acting on ABA, ethylene and auxin signaling (2018) (12)
Induction of Cross-reactive Humoral Immune Response by Immunization with Mimotopes of the Hypervariable Region 1 of the Hepatitis C Virus (2001) (12)
Modelling antibody-antigen interactions: ferritin as a case study. (1995) (12)
Conformational analysis of putative regulatory subunit D of the toluene/o‐xylene‐monooxygenase complex from Pseudomonas stutzeri OX1 (2001) (12)
Endocytosis of synaptic ADAM 10 in neuronal plasticity and Alzheimer ’ s disease . (2013) (12)
Protein structure prediction (2013) (12)
Cancer-Selective Targeting of the NF-κB Survival Pathway with GADD45β/MKK7 Inhibitors (2014) (11)
Epitope-specific antibody and suppression of autoantibody responses against a hybrid self protein. (1998) (11)
Improving your target-template alignment with MODalign (2012) (11)
The facile reaction of B-alkyl-9-borabicyclo[3.3.1]nonanes with benzaldehyde (1977) (11)
Affinity purification of a difficult-sequence protein. Implications for the inclusion of capping in synthetic protocols. (2009) (11)
Detecting Mutually Exclusive Interactions in Protein-Protein Interaction Maps (2012) (10)
Protein structure prediction and design. (1998) (10)
Mutation Pattern of Paired Immunoglobulin Heavy and Light Variable Domains in Chronic Lymphocytic Leukemia B Cells (2011) (10)
ProCoCoA: A quantitative approach for analyzing protein core composition (2013) (10)
Differential capacity of anti‐RAP and anti‐megalin antibodies to produce progressive passive Heymann nephritis — implications for the pathogenesis of idiopathic human membranous glomerulonephritis (2006) (10)
Homology-derived three-dimensional structure prediction of Candida cylindracea lipase. (1992) (10)
Chronic daily headache: personality study by means of computerized MMPI-2 (2000) (9)
Lipoprotein(a) Where Do We Stand? From the Physiopathology to Innovative Terapy (2021) (9)
Identifying a putative common binding site shared by substance P receptor and an anti-substance P monoclonal antibody. (1995) (9)
Albumin-stimulated TGFβ-1 in renal tubular cells is associated with activation of MAP kinase (2007) (9)
Solution structures of large Group 5A and 6A polyoxoanions by oxygen-17 nuclear magnetic resonance (1975) (9)
Toward a better understanding of the interaction between TGF-β family members and their ALK receptors (2012) (9)
Determination of the autocorrelation orders of proteins. (1985) (9)
The βI/βIII‐tubulin isoforms and their complexes with antimitotic agents (2006) (9)
Reactive immunization suppresses advanced glycation and mitigates diabetic nephropathy. (2009) (9)
Exploring the Unfolding Pathway of Maltose Binding Proteins: An Integrated Computational Approach. (2014) (8)
Exploiting evolutionary relationships for predicting protein structures (2003) (8)
Replacing the glutamate ligand in the structural zinc site of Sulfolobus solfataricus alcohol dehydrogenase with a cysteine decreases thermostability. (1995) (8)
Epigenome Chaos: Stochastic and Deterministic DNA Methylation Events Drive Cancer Evolution (2021) (8)
The significance of performance ranking in CASP--response to Marti-Renom et al. (2002) (7)
SOLUTION STRUCTURES OF LARGE GROUP 5A AND 6A POLYOXOANIONS BY (17)O NUCLEAR MAGNETIC RESONANCE (1975) (7)
Cloning, characterization, and modeling of a monoclonal anti‐human transferrin antibody that competes with the transferrin receptor (1994) (7)
An account of the Seventh Meeting of the Worldwide Critical Assessment of Techniques for Protein Structure Prediction (2007) (7)
Dynamics behind affinity maturation of an anti‐HCMV antibody family influencing antigen binding (2017) (7)
Methylation of the Suppressor Gene p16INK4a: Mechanism and Consequences (2020) (7)
Detection of blood pressure increments in active elderly individuals: the role of ambulatory blood pressure monitoring. (2014) (7)
Structural model and ligand interactions of the Xanthomonas axonopodis pv. citri oligopeptide-binding protein. (2007) (7)
The Relationship Between Protein Sequence, Structure and Function (2005) (6)
Chemical equilibrium at an antibody binding site: catalytic efficiency defined by a Haldane relationship. (1990) (6)
Comparison of antibody and albumin catalyzed hydrolysis of steroidalp-nitrophenylcarbonates (1998) (6)
Comparative Modelling Techniques: Where are we? (2003) (6)
Aldehyde modification of peptide immunogen enhances protein‐reactive antibody response to toxic shock syndrome toxin‐1 (2006) (6)
Redesigning the substrate specificity of the hepatitis C virus NS3 protease. (1996) (6)
Induction of covalent binding antibodies. (2006) (6)
Pregnant woman infected by Coronavirus Disease (COVID-19) and calcifications of the fetal bowel and gallbladder: a case report. (2020) (6)
Pregnant woman infected by Coronavirus disease (COVID-19) and calcifications of the fetal bowel and gallbladder (2021) (6)
High-coverage methylation data of a gene model before and after DNA damage and homologous repair (2017) (6)
The MoVIN server for the analysis of protein interaction networks (2008) (6)
Effect of restoring sinus rhythm in hypertensive patients with atrial fibrillation undergoing electrical cardioversion (2016) (6)
The biological applications of protein models (2008) (6)
A brighter future for protein design. (2004) (5)
Protein structure prediction: playing the fold. (1996) (5)
Statistical evaluation of the coding capacity of complementary DNA strands. (1984) (5)
Integral and differential form of the protein folding problem (2004) (5)
The computational prediction of protein assemblies. (2017) (5)
Aldehyde modification and alum coadjuvancy enhance anti‐TNF‐α autovaccination and mitigate arthritis in rat (2015) (5)
PICMI: mapping point mutations on genomes (2010) (5)
Thermodynamic Approach to a Possible Theory of the Evolution of a Genetic Code (1982) (5)
A statistical method for predicting alpha-helical and beta-sheet regions in proteins from their amino acidic sequences (1984) (5)
Network cleansing: Reliable interaction networks (2009) (5)
Markov analysis of alpha-helical, beta-sheet and random coil regions of proteins (1983) (5)
VARIANT: a store and retrieval system for human haemoglobin variants. (1990) (4)
Horizontal and vertical growth of S. cerevisiae metabolic network (2011) (4)
Protein Sequence Alignment (2005) (4)
The Computational Analysis of Protein Structures: Sources, Methods, Systems and Results (1989) (3)
Antibodies-antidotes against organophosphorus compounds (2009) (3)
RNA editing differently affects protein-coding genes in D. melanogaster and H. sapiens (2015) (3)
The Architecture of Loops in Proteins (1996) (3)
Exploiting Publicly Available Biological and Biochemical Information for the Discovery of Novel Short Linear Motifs (2011) (3)
A transportable interactive package for the statistical analysis and handling of sequence data. (1988) (3)
Synthesis of a new hapten for generating catalytic antibodies that activate doxorubicin prodrugs (2001) (3)
Evaluation of protein structure prediction methods: Issues and strategies (2011) (3)
Substrate‐Driven Formation of a Proteolytic Antibody Light Chain a (1995) (3)
A computational approach for the functional classification of the epigenome (2017) (3)
A resource for benchmarking the usefulness of protein structure models (2012) (3)
REDUCTION OF α,β-ACETYLENIC KETONES WITH B-3-PINANYL-9-BORABICYCLO(3.3.1)NONANE. HIGH ASYMMETRIC INDUCTION IN ALIPHATIC SYSTEMS (1980) (3)
, between Hypervariable Regions 1 and 2 Is Modulated by a Complex Interplay Glycoprotein to CD 81 Is Strain Specific and Binding of the Hepatitis C Virus E 2 (2002) (3)
GLASS: A tool to visualize protein structure prediction data in three dimensions and evaluate their consistency (1998) (3)
Tracing and tracking epiallele families in complex DNA populations (2020) (3)
HYPERGANGLIONOSIS AND HIRSCHSPRUNG'S DISEASE (1999) (3)
ASYMMETRIC REDUCTIONS OF PROPARGYL KETONES. AN EFFECTIVE APPROACH TO THE SYNTHESIS OF OPTICALLY ACTIVE COMPOUNDS (1984) (3)
No protein is an island. (2009) (3)
Education and Research Infrastructures (2011) (3)
The aim of the conference is to provide a scientific forum for discussing the issues and advances in computational biology. (2008) (2)
A database system for handling phage library-derived sequences. (1993) (2)
DANTE: a workbench for sequence analysis. (2000) (2)
Loss of p53 activates thyroid hormone via type 2 deiodinase and enhances DNA damage (2023) (2)
Managing Your Biological Data with Python (2014) (2)
The PARIGA Server for Real Time Filtering and Analysis of Reciprocal BLAST Results (2013) (2)
Antibody Catalysis Approaching the Activity of Enzymes. (1988) (2)
Protein Structural Motifs : Identification , Annotation and Use in Function Prediction Allegra Via (2011) (2)
Covalent Binding Antibodies Suppress Advanced Glycation: On the Innate Tier of Adaptive Immunity (2009) (2)
Editorial (2009) (2)
A proangiogenic peptide derived from vascular endothelial growth factor receptor-1 acts through α5β1 integrin (2008) (2)
Erratum: Antibody structural modeling with prediction of immunoglobulin structure (PIGS) (Nature Protocols (2014) 9 (2771-2783) DOI: 10.1038/nprot.2014.189) (2015) (2)
Update on protein structure prediction (1996) (2)
Thermodynamic characteristics of a biological organism: Information value of a gene and of a protein as a measure of the efficiency and as an index of selective pressure (1983) (2)
Introduction to Bioinformatics (2006) (2)
Amino-acid sequences of proteins as autocorrelated series (1984) (2)
Sequences and topology: the completeness of biological space (2007) (1)
Chemical synthesis of a designed β-protein through the flow-polyamide method (2009) (1)
Exploiting homology information in nontemplate based prediction of protein structures. (2015) (1)
Clinical quiz. Long-segment Hirschsprung's disease (total colonic aganglionosis). (1998) (1)
Erratum: Antibody modeling using the Prediction of ImmunoGlobulin Structure (PIGS) web server (2015) (1)
Structure prediction of globular proteins (2008) (1)
Antibody catalysis - A super activity (1999) (1)
A resource for benchmarking the usefulness of protein structure models (2012) (1)
Exercise Training in Patients with Heart Failure: From Pathophysiology to Exercise Prescription (2022) (1)
Mechanism-dependent selection of immunoglobulin gene library for obtaining covalent biocatalysts (2007) (1)
Information value and information content in the evolutionary strategy of the genetic code (1988) (1)
A Structure–Function Study of a Catalytic Antiidiotypic Antibody to the Human Erythrocyte Acetyl Cholinesterase (2002) (1)
The mepsMAP Server. Mapping Epitopes on Protein Surface: Mining Annotated Proteins (2007) (1)
Sequences and topology: a decade of genomes (2005) (1)
TiPs: a database of therapeutic targets in pathogens and associated tools (2013) (1)
Massive screening of copy number population-scale variation in Bos taurusgenome (2013) (1)
Catalysis by antibodies to VIP (1992) (1)
PA13 LACTOBACILLUS REUTERI IN INFANTS WITH FUNCTIONAL CHRONIC CONSTIPATION: A DOUBLE-BLIND, RANDOMIZED, PLACEBO-CONTROLLED STUDY (2009) (0)
Molecular evolution of a gene cluster of female serine proteases involved in post-mating mechanisms of the malaria mosquito Anopheles gambiae (2010) (0)
Chemical synthesis of a designed beta-protein through the flow-polyamide method. (1993) (0)
Sequences and topology: a decade of genomes Editorial overview (2005) (0)
In vitroselection of peptides from molecular repertoires (1993) (0)
HBx–DLEU2 lncRNA complex affects transcription of new target promoters (2015) (0)
Sequence analysis Identiﬁcation of a novel putative mitogen-activated kinase cascade on human chromosome 21 by computational approaches (2006) (0)
Alternative Splicing in the ENCODE Protein complement (2008) (0)
Hierarchical Clustering of B-Cell Receptor Structures in Splenic Marginal Zone Lymphoma (2012) (0)
Remarkably similar antigen receptors in a subset of patients with IgG+ chronic lymphocytic leukemia (2004) (0)
QUALITY AND EFFECTIVENESS OF PROTEIN STRUCTURE COMPARATIVE MODELS (2006) (0)
uses mimotopes of hyper variabele region of e2 glycoprotein of HCV and their (1999) (0)
Protein-Protein Interaction (2005) (0)
SAP97 DRIVES ADAM10 FROM GOLGI OUTPOSTS TO THE SYNAPSE THROUGH A PKC-DEPENDENT PHOSPHORYLATION PROCESS (2014) (0)
[Results of studies of elimination of urinary steroids in diabetic pregnant women and in pregnancy toxemia]. (1959) (0)
Design of a small protein as a potential source of selectable peptide sequences of known structure (1995) (0)
Predicting Protein Features from the Sequence (2005) (0)
Assessment of homology‐based predictions in CASP5 (2004) (0)
Book Reviews Protein Structure Prediction: Concepts and Applications (2007) (0)
P190 HBX DIRECTLY MEDIATES DEREGULATION OF SEVERAL NCRNAS IDENTIFIED BY CHIP-SEQ EXPERIMENT (2014) (0)
A Brighter Future for Protein Design (2004) (0)
DeTECTOR: GENE TRANSLATION IN EUKARYOTES, A DIAGNOSTIC TOOL (2009) (0)
HBx directly mediates deregulation of several ncRNAs identified by ChIP-Seq experiment (2014) (0)
Statstl evaluation ofthecoding capacity ofcomplementary DNA strands (1984) (0)
Further engineering of a designed protein, the minibody: from an insoluble to a soluble molecule (1994) (0)
443 HBX-INDUCED REPRESSION OF MIR224 EXPRESSION RELIEVES THE DIRECT INHIBITORY EFFECTS OF MIR224 ON HBV PGRNA TO POTENTIATE HBV REPLICATION (2012) (0)
Flexible protein-protein docking : MTgase / G-CSF (2007) (0)
Functional Site Identification (2005) (0)
Low incidence of hyperprolactinemia following traumatic brain injury (2017) (0)
Title : Assessment of model accuracy estimations in CASP 12 Short title : Model accuracy assessment (2017) (0)
ECCB 2012 Organization (2012) (0)
The challenge of protein structure prediction (2002) (0)
Inhibition of endothelial cell migration by vascular endothelial growth factor receptor-1 peptides. (2005) (0)
PIGS: a resource for immunoglobulin structure prediction (2008) (0)
VEGFR-1 derived peptide specifically inhibits PlGF and VEGF-B-induced migration of endothelial cells and in vivo angiogenesis. (2007) (0)
Recent Publications (1992) (0)
PLANET: a phage library analysis expert tool. (1995) (0)
The power of data: structural bioinformatics yesterday and today (2016) (0)
Structural bioinformatics: advances and applications (2006) (0)
Structure Variability Binding-Site Leukemia B Cells Show Limited Igs Expressed by Chronic Lymphocytic (2013) (0)
ISMB 2008 Organization (2008) (0)
Structural landscape of immunoglobulin lambda light chains (2010) (0)
All-Atoms Md Simulation of Protein Translocation through α-Hemolysin Nanopore: Implications for Protein Sequence/Structural Analyses (2014) (0)
DEVELOPMENT OF INNOVATIVE TOOLS FOR ALZHEIMER'S DISEASE THERAPY (2014) (0)
Mimotopes of the hypervariable region 1 of HCV E2 glycoprotein and use thereof. (1999) (0)
Correction for Ballarino et al., “Novel Long Noncoding RNAs (lncRNAs) in Myogenesis: a miR-31 Overlapping lncRNA Transcript Controls Myoblast Differentiation” (2018) (0)
Design and chemical synthesis of the Minibody: A Zn-binding protein with a novel fold (1993) (0)
A method to evaluate the relative weights of structural and functional constraints on a genome (1991) (0)
Genome-wide RNA-seq analysis indicates that the DAG1 transcription factor promotes hypocotyl elongation acting on ABA, ethylene and auxin signaling (2018) (0)
Mimotopes of the hyper variabelen region 1 of the E2 glycoprotein of HCV uses and their (1999) (0)
Computer graphics: a powerful tool for molecular biotechnologies (1989) (0)
P0532 : HBx-DLEU2 lncRNA complex affects transcription of new target promoters (2015) (0)
A computational approach for the functional classification of the epigenome (2017) (0)
[Human menopause gonadotropins in male deficiency of gonadostimulins]. (1968) (0)
129 IDENTIFICATION OF HBx TARGET miRNAs THAT REGULATE HBV REPLICATION BY ChIP-Seq (2013) (0)
Kinetics of continuous maize starch fermentation by Schwanniomyces castellii (1989) (0)
In vivo anti-angiogenic potential of a peptide that inhibits VEGFR-1 homodimerization and PlGF-induced migration of endothelial cells. (2008) (0)
Learning from evolution to predict protein structure and function (2006) (0)
OP-CBIO150449 1..6 (2015) (0)
[Clinico-statistical study of third-trimester gestosis during the 5-year period of 1964-1968]. (1971) (0)
Genome-wide identification of direct HBx genomic targets (2017) (0)
Folding and Sequence Analysis (2005) (0)
Protein-Small Molecule Interaction (2005) (0)
Risk of suffering from dyslipidaemia patients included in the IBERICAN study (2018) (0)
From Genomes to Protein Models and Back (2007) (0)
[Thyrotoxicosis in pregnancy and hepatic disturbances (new clinical and therapeutic orientations)]. (1965) (0)
Molecular evolution of genes involved in post-mating reproductive mechanisms of the malaria mosquito Anopheles gambiae. (2010) (0)
Blood pressure (BP) control in patients with atrial fibrillation (AF). A 24-h ambulatory blood pressure monitoring (ABPM) study, before and after electric cardioversion (ECV) (2013) (0)
Nutritional status, physical performance, and disability in the elderly of the Peruvian Andes: reply to Ortiz (2017) (0)
THE FACILE REACTION OF B-ALKYL-9-BORABICYCLO(3.3.1)NONANES WITH BENZALDEHYDE (1977) (0)
B-ALKYL-9-BORABICYCLO(3.3.1)NONANES AS MILD, CHEMOSELECTIVE REDUCING AGENTS FOR ALDEHYDES (1978) (0)
Catalytic antibodies. (1988) (0)
F.100. Intramolecular Epitope Spreading in Active Heymann Nephritis (2006) (0)
possess molecules were with binding sites of antibodies that catalytic properties. (1987) (0)
Heymann Nephritis Fragment Correlate with Nephritogenicity in Conformation and Glycosylation of a Megalin (2004) (0)
Antibody-Catalyzed Redox Reaction. (1990) (0)
[A structure-activity study of a catalytic antiidiotypic antibody to the human erythrocyte acetylcholinesterase]. (2002) (0)
THE REACTION OF B-ALKYL-9-BORABICYCLO(3.3.1)NONANES WITH ALDEHYDES AND KETONES. A FACILE ELIMINATION OF THE ALKYL GROUP BY ALDEHYDES (1979) (0)
Molecular cloning of a proteolytic antibody light chain. (1995) (0)
RNA Stabilizes Transcription-Dependent Chromatin Loops Induced By Nuclear Hormones (2019) (0)
Proceedings of a Conference On Catalytic Antibodies and Antibody Engineering June 6-11, 1993, Moscow, Russia - General Discussion (1994) (0)
THE SYNTHESIS OF NATURALLY OCCURRING 4-ALKYL- AND 4-ALKENYL-Γ-LACTONES USING THE ASYMMETRIC REDUCING AGENT B-3-PINANYL-9-BORABICYCLO(3.3.1)NONANE (1981) (0)
Screening strategies for catalytic antitransition-state analog antibodies. (1995) (0)
Aldehyde modification and alum synergize to enhance anti-TNF-alfa vaccination and mitigates arthritis in rats (2014) (0)
Crystal Structure of recombinant A.17 antibody FAB fragment (2011) (0)
Nucleic Acids Research (0)
EGFR activation triggers cellular hypertrophy and lysosomal disease in NAGLU-depleted cardiomyoblasts, mimicking the hallmarks of mucopolysaccharidosis IIIB (2018) (0)
Antibody Catalysis of Bimolecular Amide Formation. (1988) (0)
Catalytic and superantibodies, a satellite conference of the Tenth International Congress of Immunology, New Delhi, India, 29 October-1 November 1998. (2000) (0)
Crystal Structure of phosphonate-modified recombinant A.17 antibody FAB fragment (2011) (0)
Catalysis of Esterolytic Reactions by the Anti-Idiotypic Antibody against Human Erythrocyte Acetylcholinesterase (2001) (0)
Catalytic antibodies. (1987) (0)
Catalysis of ecterilysis by anti-idiotypic antibody towards acetylcholinesterase (2001) (0)
Self Protein Autoantibody Responses Against a Hybrid Epitope-Specific Antibody and Suppression of Alfonso (1998) (0)
COLONIC TRANSIT TIMES IN CHILDREN WITH ANORECTAL MALFORMATIONS: 28 (2001) (0)
ESOPHAGEAL FUNCTION AFTER OPERATION FOR ESOPHAGEAL ATRESIA: 13 (2001) (0)
Assessing diaphragm function by ultrasound in amyotrophic lateral sclerosis (ALS) patients (2022) (0)
PA4 DO STOOL FORM AND FREQUENCY CORRELATE WITH TOTAL GASTROINTESTINAL TRANSIT TIME? RESULTS FROM AN ITALIAN STUDY IN CONSTIPATED AND HEALTHY CHILDREN (2010) (0)
T2058 Gastric Acid Suppressors As a Risk Factor for Pediatric Clostridium difficile Infection (2009) (0)
Erratum: Computer Corner (Trends in Biochemical Sciences 25; August (402-403)) (2000) (0)

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