Arlindo Oliveira
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Arlindo Oliveiraengineering Degrees
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Arlindo Oliveiracomputer-science Degrees
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Engineering Computer Science
Arlindo Oliveira's Degrees
- PhD Computer Science University of Lisbon
- Masters Electrical and Computer Engineering University of Lisbon
- Bachelors Electrical and Computer Engineering University of Lisbon
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Why Is Arlindo Oliveira Influential?
(Suggest an Edit or Addition)According to Wikipedia, Arlindo Manuel Limede de Oliveira is a Portuguese academic, researcher and writer. He is author of more than 150 scientific articles and papers in conferences, and three books: Computer Architecture , The Digital Mind , and Inteligência Artificial .
Arlindo Oliveira's Published Works
Published Works
- Biclustering algorithms for biological data analysis: a survey (2004) (2145)
- The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae (2005) (528)
- Temporal Data Mining: an overview (2001) (295)
- The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae (2013) (241)
- YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface (2010) (214)
- YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae (2007) (183)
- Techniques for the creation of digital watermarks in sequentialcircuit designs (2001) (147)
- Identification of Regulatory Modules in Time Series Gene Expression Data Using a Linear Time Biclustering Algorithm (2010) (117)
- Cutaneous scars in American tegumentary leishmaniasis patients: a site of Leishmania (Viannia) braziliensis persistence and viability eleven years after antimonial therapy and clinical cure. (1998) (104)
- Generalization of Pattern-Growth Methods for Sequential Pattern Mining with Gap Constraints (2003) (95)
- Fully compressed suffix trees (2008) (95)
- Finite state machine decomposition for low power (1998) (92)
- An Empirical Comparison of Text Categorization Methods (2003) (86)
- BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data (2009) (72)
- Prime implicant computation using satisfiability algorithms (1997) (71)
- Robust techniques for watermarking sequential circuit designs (1999) (70)
- A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series (2009) (67)
- Biotechnology, Big Data and Artificial Intelligence. (2019) (66)
- An efficient algorithm for the identification of structured motifs in DNA promoter sequences (2006) (58)
- Discriminative Learning of Bayesian Networks via Factorized Conditional Log-Likelihood (2011) (57)
- A Data Mining Approach for the Detection of High-Risk Breast Cancer Groups (2010) (55)
- A new algorithm for the reduction of incompletely specified finite state machines (1998) (55)
- A highly scalable algorithm for the extraction of CIS-regulatory regions (2005) (53)
- A Linear Time Biclustering Algorithm for Time Series Gene Expression Data (2005) (50)
- Inference of regular languages using state merging algorithms with search (2005) (49)
- Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients (2018) (49)
- Approximate String Matching with Compressed Indexes (2009) (48)
- Sequential Pattern Mining Algorithms: Trade-offs between Speed and Memory (2004) (47)
- Semi-supervised single-label text categorization using centroid-based classifiers (2007) (46)
- A compressed self-index using a Ziv–Lempel dictionary (2006) (43)
- Efficient Haplotype Inference with Pseudo-boolean Optimization (2007) (41)
- Efficient Algorithms for the Inference of Minimum Size DFAs (2001) (39)
- Constructive Induction Using a Non-Greedy Strategy for Feature Selection (1992) (39)
- Substrate specificity of human cathepsin D using internally quenched fluorescent peptides derived from reactive site loop of kallistatin. (2001) (38)
- A parallel algorithm for the extraction of structured motifs (2004) (34)
- Efficient search techniques for the inference of minimum size finite automata (1998) (33)
- Apt-pbo: solving the software dependency problem using pseudo-boolean optimization (2010) (33)
- A new algorithm for exact reduction of incompletely specified finite state machines (1999) (33)
- MUSA: a parameter free algorithm for the identification of biologically significant motifs (2006) (31)
- LSAT-an algorithm for the synthesis of two level threshold gate networks (1991) (29)
- The bio.tools registry of software tools and data resources for the life sciences (2019) (28)
- An Efficient Biclustering Algorithm for Finding Genes with Similar Patterns in Time-series Expression Data (2007) (27)
- Implicit FSM decomposition applied to low-power design (2002) (26)
- Exact Minimization of Binary Decision Diagrams Using Implicit Techniques (1998) (26)
- DegreeCox – a network-based regularization method for survival analysis (2016) (26)
- Learning Complex Boolean Functions: Algorithms and Applications (1993) (25)
- Dynamic Fully-Compressed Suffix Trees (2008) (25)
- Using complementation and resequencing to minimize transitions (1998) (25)
- Conditional Random Fields as Recurrent Neural Networks for 3D Medical Imaging Segmentation (2018) (22)
- Haplotype inference with pseudo-Boolean optimization (2011) (22)
- An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance (2008) (22)
- Efficient Extraction of Structured Motifs Using Box-Links (2004) (22)
- Implicit resolution of the Chapman-Kolmogorov equations for sequential circuits: an application in power estimation (2003) (22)
- Efficient and Accurate Haplotype Inference by Combining Parsimony and Pedigree Information (2010) (21)
- CcrB typing tool: an online resource for staphylococci ccrB sequence typing. (2008) (20)
- SEQUENTIAL PATTERN MINING WITH APPROXIMATED CONSTRAINTS (2004) (19)
- Grammatical Inference: Algorithms and Applications (2000) (19)
- Refining current knowledge on the yeast FLR1 regulatory network by combined experimental and computational approaches. (2010) (18)
- Efficient learning of Bayesian network classifiers: an extension to the TAN classifier (2007) (18)
- Using the minimum description length principle to infer reduced ordered decision graphs (2004) (18)
- TFRank: network-based prioritization of regulatory associations underlying transcriptional responses (2011) (18)
- Constraint Relaxations for Discovering Unknown Sequential Patterns (2004) (18)
- Haplotype Inference by Pure Parsimony: A Survey (2010) (16)
- Inferring Reduced Ordered Decision Graphs of Minimum Description Length (1995) (16)
- Empirical Evaluation of Centroid-based Models for Single-label Text Categorization (2006) (16)
- Learning bayesian networks consistent with the optimal branching (2007) (15)
- Angiosarcoma of the breast associated with Kasabach-Merritt syndrome (2002) (15)
- Efficient alignment of pyrosequencing reads for re-sequencing applications (2011) (15)
- Using Context-Free Grammars to Constrain Apriori-based Algorithms for Mining Temporal Association Rules (2002) (14)
- Computational approach to the discovery of phytochemical molecules with therapeutic potential targets to the PKCZ protein (2018) (14)
- FSM decomposition by direct circuit manipulation applied to low power design (2000) (13)
- Models and Algorithms for Computing Minimum-Size Prime Implicants (2008) (13)
- Efficient Haplotype Inference with Combined CP and OR Techniques (2008) (13)
- A probabilistic method for the computation of testability of RTL constructs (2004) (13)
- Efficient and Tight Upper Bounds for Haplotype Inference by Pure Parsimony Using Delayed Haplotype Selection (2007) (12)
- Limits of Exact Algorithms For Inference of Minimum Size Finite State Machines (1996) (12)
- On The Complexity Of Power Estimation Problems (2007) (12)
- Approximate String Matching with Lempel-Ziv Compressed Indexes (2007) (11)
- An Evaluation of Discretization Methods for Non-Supervised Analysis of Time-Series Gene Expression Data (2005) (11)
- Clique Analysis of Query Log Graphs (2008) (11)
- Dotted Suffix Trees A Structure for Approximate Text Indexing (2006) (11)
- Parallel and Distributed Compressed Indexes (2010) (11)
- Bottom-up testing methodology for VLSI (1988) (11)
- Efficient Learning of Bayesian Network Classifiers (2007) (10)
- Inference of Sequential Association Rules Guided by Context-Free Grammars (2002) (10)
- Mining query log graphs towards a query folksonomy (2011) (10)
- Branch and Bound Algorithms for Highly Constrained Integer Programs (1997) (10)
- Sparse network-based regularization for the analysis of patientomics high-dimensional survival data (2018) (9)
- Using Soft Labels to Model Uncertainty in Medical Image Segmentation (2021) (9)
- Low Overhead Encodings For Reduced Activity In Data And Address Buses (1999) (9)
- Using Information Interaction to Discover Epistatic Effects in Complex Diseases (2013) (9)
- Inference of State Machines from Examples of Behavior (1995) (9)
- On the Use of Suffix Arrays for Memory-Efficient Lempel-Ziv Data Compression (2009) (8)
- Qualitative modelling and formal verification of the FLR1 gene mancozeb response in Saccharomyces cerevisiae. (2011) (8)
- Improving Satisfiability Algorithms with Dominance and Partitioning (1997) (7)
- Mining Patterns Using Relaxations of User Defined Constraints (2004) (7)
- Efficient Biclustering Algorithms for Time Series Gene Expression Data Analysis (2009) (7)
- IR-BASE: An integrated framework for the research and teaching of information retrieval technologies (2007) (7)
- Grammatical inference : algorithms and applications : 5th International Colloquium, ICGI 2000, Lisbon, Portugal, September 11-13, 2000 : proceedings (2000) (7)
- On Community Detection in Very Large Networks (2010) (7)
- Circuit partitioning techniques for power estimation using the full set of input correlations (2001) (6)
- An exact gate assignment algorithm for tree circuits under rise and fall delays (2000) (6)
- New Generation of Linux Meta-installers (2007) (6)
- A Data Mining Approach to Credit Risk Evaluation and Behaviour Scoring (2003) (6)
- Encoder-Decoder Architectures for Clinically Relevant Coronary Artery Segmentation (2021) (6)
- Sensitivity to SEUs evaluation using probabilistic testability analysis at RTL (2007) (6)
- GRISOTTO: A greedy approach to improve combinatorial algorithms for motif discovery with prior knowledge (2011) (6)
- An Efficient Algorithm for Generating Super Condensed Neighborhoods (2005) (5)
- DFT and Probabilistic Testability Analysis at RTL (2006) (5)
- Haplotype Inference Combining Pedigrees and Unrelated Individuals (5)
- Using a More Powerful Teacher to Reduce the Number of Queries of the L* Algorithm in Practical Applications (2005) (5)
- Ontology Design Principles and Normalization Techniques in the Web (2008) (5)
- On the Suitability of Suffix Arrays for Lempel-Ziv Data Compression (2008) (5)
- Using the Minimum Description Length Principle to Infer Reduced Ordered Decision Graphs (1996) (5)
- EXACT POWER ESTIMATION USING WORD LEVEL TRANSITION PROBABILITIES (1999) (4)
- Sliding Window Update Using Suffix Arrays (2011) (4)
- Indexed Hierarchical Approximate String Matching (2008) (4)
- Towards Automatic Learning of a Structure Ontology For Technical Articles (2004) (4)
- The Digital Mind (2017) (4)
- Haplotype Inference with Boolean Constraint Solving: An Overview (2008) (4)
- Power optimization of combinational modules using self-timed precomputation (1998) (3)
- Quantitative Modeling the Saccharomyces cerevisiae FLR1 Regulatory Network Using an S-System Formalism (2011) (3)
- Mining query logs induced graphs (2010) (3)
- The ELIXIR channel in F1000Research (2015) (3)
- Satisfiability-Based Algorithms for 0-1 Integer Programming (2007) (3)
- String processing and information retrieval : 9th International Symposium, SPIRE 2002, Lisbon, Portugal, September 11-13, 2002 : proceedings (2002) (3)
- Graph Neural Networks for Traffic Forecasting (2021) (3)
- Faster Generation of Super Condensed Neighbourhoods Using Finite Automata (2005) (3)
- Automated Detection of Coronary Artery Stenosis in X-ray Angiography using Deep Neural Networks (2021) (3)
- Mining Large Query Induced Graphs towards a Hierarchical Query Folksonomy (2010) (3)
- Tratamento das complicações de fraturas diafisárias dos ossos do antebraço (1994) (3)
- Efficient generation of super condensed neighborhoods (2007) (3)
- Probabilistic Testability Analysis and DFT Methods at RTL (2006) (3)
- The ELIXIR channel in F1000Research. (2015) (2)
- An implicit formulation for exact BDD minimization of incompletely specified functions (1997) (2)
- The regulatory network underlying the transcriptional up-regulation of the FRL1 gene in mancozeb stressed yeast cells: qualitative modeling and simulation (2009) (2)
- Assessing the Impact of Attention and Self-Attention Mechanisms on the Classification of Skin Lesions (2021) (2)
- Proceedings of the 9th International Symposium on String Processing and Information Retrieval (2002) (2)
- Biomedical image analysis competitions: The state of current participation practice (2022) (2)
- Time and Memory Efficient Lempel-Ziv Compression Using Suffix Arrays (2009) (2)
- Fully Generalized Graph Cores (2010) (2)
- Grammatical Inference: Algorithms and Applications: 6th International Colloquium: ICGI 2002, Amsterdam, The Netherlands, September 23-25, 2002. Proceedings (2000) (2)
- Using graph modularity analysis to identify transcription factor binding sites (2010) (2)
- Constant Time Clash Detection in protein Folding (2009) (2)
- Learning Concepts by Synthesizing Minimal Threshold Gate Networks (1991) (2)
- Computer Architecture:Digital Circuits to Microprocessors (2018) (1)
- Bioinformatics: A New Approach for the Challenges of Molecular Biology (2007) (1)
- An ecient clash detection method for molecular structures applications (2007) (1)
- Suffix Arrays - A Competitive Choice for Fast Lempel-Ziv Compressions (2016) (1)
- The bio.tools registry of software tools and data resources for the life sciences (2019) (1)
- Metrics for Grid Applicability: A Distributed Elliptic Curve Platform Assessment (2003) (1)
- Improved algorithm and data structures for modularity analysis of large networks (2008) (1)
- Sugestões de Tags para Digg (2007) (1)
- Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph (2008) (1)
- Modeling the Geospatial Evolution of COVID-19 using Spatio-temporal Convolutional Sequence-to-sequence Neural Networks (2021) (1)
- Montemuro - A Última Rota da Transumância (1999) (1)
- Using systems biology approaches to study a multidrug resistance network (2011) (1)
- An Evaluation of the Impact of Side Chain Positioning on the Accuracy of Discrete Models of Protein Structures (2008) (1)
- On the problem of gate assignment under different rise and fall delays (2003) (1)
- Combining Off and On-Policy Training in Model-Based Reinforcement Learning (2021) (1)
- A blueprint for conscious machines (2022) (1)
- Improved Model Checking Techniques for State Space Analysis of Gene Regulatory Networks (2010) (1)
- Generic ILP vs Specialized 0-1 ILP for Haplotype Inference (2008) (1)
- Qual é o seu diagnóstico (2010) (1)
- A New Quick Point Location Algorithm (2004) (0)
- Implementation of a canine gastroenteritis real-time participation and monitoring system: a possibly valuable epidemiological tool. (2009) (0)
- Processamento Histológico dos Tecidos Oculares (2009) (0)
- Quisto matrical. Diagnósticos diferenciais. (2009) (0)
- YEASTRACT : a database of transcription regulatory associations in Saccharomyces cerevisiae (2005) (0)
- Integrating Dynamic Power Management in the Design Flow (1999) (0)
- Session details: Graph based retrieval (IR) (2007) (0)
- What Can Boolean Networks Learn ? (1992) (0)
- OutSystems Compiler Optimizations (2007) (0)
- Making algorithms work for us (2018) (0)
- An Overview on Mixture and Hidden Markov Models of Gene Expression in Time Series (2008) (0)
- Making algorithms work for us (2018) (0)
- Discovering transcriptional regulatory modules using BiGGEsTS A case study (2009) (0)
- Empirical Learning of Boolean Functions Using Two-Level Logic Synthesis (1991) (0)
- Additional materials and results for MUSA (2006) (0)
- 16. Bioinformatics corner: tools and databases (2005) (0)
- Latent Semantic Analysis in Technology-Enhanced Learning (2007) (0)
- Special issue on string processing and information retrieval (2004) (0)
- TAPYR: An efficient high-throughput sequence aligner for re-sequencing applications (2012) (0)
- Efficient identification of epistatic effects in multifactorial disorders (2013) (0)
- LECT NOTE COMPUT SCI (2004) (0)
- LEMPEL-ZIV SLIDING WINDOW UPDATE WITH SUFFIX ARRAYS (2013) (0)
- Experimentando con Arduino y Scilab: propagación de calor en una barra metálica (2019) (0)
- Un modelo de recuperación de información basado en SVMs (2004) (0)
- Human and animal dermatophytosis: is it a real Public Health issue?. (2009) (0)
- Transfusões sanguíneas em animais de companhia. (2009) (0)
- Gastrocanis – an internet-based epidemiologic surveillance tool. (2009) (0)
- P1303 clfB typing in Staphylococcus aureus: online database for dis-play, clustering analysis and storage of clfB DNA sequences (2007) (0)
- Ôôööðððð Ððóööøøñ Óö Øøø Üøöö Blockinøøóò Óó ×øöù Blockinøùööö Ñóøøø× (2007) (0)
- Dysautonomia in HTLV-I-associated myelopathy (HAM) (1999) (0)
- String processing and information retrieval : 10th International Symposium, SPIRE 2003, Manaus, Brazil, October 8-10, 2003 : proceedings (2003) (0)
- Approximate string matching with Ziv-Lempel compressed indexes (2007) (0)
- USING GRAMMATICAL INFERENCE TECHNIQUES TO LEARN ONTOLOGIES THAT DESCRIBE THE STRUCTURE OF DOMAIN INSTANCES (2008) (0)
- Tétano em animais de companhia (2011) (0)
- Characterization of a grading system to evaluate splenic congestion. (2011) (0)
- MyWatson: A system for interactive access of personal records (2018) (0)
- UN MODELO DE RECUPERACIÓN DE INFORMACIÓN BASADO EN SVMs INFORMATION RETRIEVAL MODEL BASED ON SVMS (2004) (0)
- Digital Floripa - CD-ROM of the City [Floripa Digital- CD-ROM de la ciudad] (1999) (0)
- Leishmaniasis in Portugal: the Veterinary Nursing as a part of the solution. (2009) (0)
- e-CCC-Biclustering : Related work on biclustering algorithms for time series gene expression data (2009) (0)
- Accurate Power Estimation Using Circuit Partitioning (0)
- Eecient Search Techniques for the Inference of Minimum Sized Finite State Machines (1997) (0)
- he Zoonotic Event of Leishmaniasis in Portugal: a Public Health Concern. (2009) (0)
- Assessing Policy, Loss and Planning Combinations in Reinforcement Learning using a New Modular Architecture (2022) (0)
- Intoxicações nos animais de companhia (2011) (0)
- ELIXIR in a Business Model Canvas (2016) (0)
- DegreeCox – a network-based regularization method for survival analysis (2016) (0)
- A case of biliary cystadenoma in a geriatric cat. (2009) (0)
- String Processing and Information Retrieval (2002) (0)
- Modelling Neuronal Behaviour with Time Series Regression: Recurrent Neural Networks on C. Elegans Data (2021) (0)
- Prophylatic perspectives on small animal dermatophytosis. (2009) (0)
- Proceedings of the 5th International Colloquium on Grammatical Inference: Algorithms and Applications (2000) (0)
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