B. Franklin Pugh
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Biology
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Computational Biology
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Biology
Why Is B. Franklin Pugh Influential?
(Suggest an Edit or Addition)B. Franklin Pugh's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Nucleosome positioning and gene regulation: advances through genomics (2009) (1014)
- Mechanism of transcriptional activation by Sp1: Evidence for coactivators (1990) (847)
- Nucleosome organization in the Drosophila genome (2008) (739)
- Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution (2011) (737)
- Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome (2007) (707)
- A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. (2008) (694)
- Identification and Distinct Regulation of Yeast TATA Box-Containing Genes (2004) (686)
- A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae. (2004) (558)
- Transcription from a TATA-less promoter requires a multisubunit TFIID complex. (1991) (539)
- Genome-wide structure and organization of eukaryotic pre-initiation complexes (2011) (498)
- Complete Khoisan and Bantu genomes from southern Africa (2010) (448)
- Functional domains and upstream activation properties of cloned human TATA binding protein. (1990) (364)
- Nucleosome positions predicted through comparative genomics (2006) (329)
- Coactivators for a proline-rich activator purified from the multisubunit human TFIID complex. (1991) (318)
- A Packing Mechanism for Nucleosome Organization Reconstituted Across a Eukaryotic Genome (2011) (318)
- Understanding nucleosome dynamics and their links to gene expression and DNA replication (2017) (310)
- Genome-wide Nucleosome Specificity and Directionality of Chromatin Remodelers (2012) (308)
- A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces. (2011) (304)
- The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation. (2016) (269)
- A genome-wide map of CTCF multivalency redefines the CTCF code. (2013) (256)
- A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome (2009) (238)
- NELF and GAGA Factor Are Linked to Promoter-Proximal Pausing at Many Genes in Drosophila (2008) (234)
- A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome (2008) (200)
- Diverse transcriptional functions of the multisubunit eukaryotic TFIID complex. (1992) (194)
- Control of gene expression through regulation of the TATA-binding protein. (2000) (192)
- Subnucleosomal Structures and Nucleosome Asymmetry across a Genome (2014) (191)
- Genome-wide function of H2B ubiquitylation in promoter and genic regions. (2011) (189)
- RNA Polymerase II Regulates Topoisomerase 1 Activity to Favor Efficient Transcription (2016) (187)
- Genomic Nucleosome Organization Reconstituted with Pure Proteins (2016) (185)
- Isolation and characterization of the Drosophila gene encoding the TATA box binding protein, TFIID (1990) (184)
- Genome-wide nucleosome specificity and function of chromatin remodellers in ES cells (2015) (180)
- How eukaryotic genes are transcribed (2009) (171)
- ChIP‐exo Method for Identifying Genomic Location of DNA‐Binding Proteins with Near‐Single‐Nucleotide Accuracy (2012) (168)
- SWR-C and INO80 Chromatin Remodelers Recognize Nucleosome-free Regions Near +1 Nucleosomes (2013) (168)
- Histone Arg Modifications and p53 Regulate the Expression of OKL38, a Mediator of Apoptosis* (2008) (162)
- High-Resolution Genome-wide Mapping of the Primary Structure of Chromatin (2011) (161)
- The TATA-binding protein and associated factors are components of pol III transcription factor TFIIIB (1992) (134)
- Full and partial genome-wide assembly and disassembly of the yeast transcription machinery in response to heat shock. (2006) (134)
- Stable binding of recA protein to duplex DNA. Unraveling a paradox. (1987) (127)
- Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome. (2009) (120)
- Evidence for Functional Binding and Stable Sliding of the TATA Binding Protein on Nonspecific DNA (*) (1995) (116)
- GeneTrack - a genomic data processing and visualization framework (2008) (115)
- General mechanism for RecA protein binding to duplex DNA. (1988) (111)
- Tail and Kinase Modules Differently Regulate Core Mediator Recruitment and Function In Vivo. (2016) (107)
- Kinetic competition between elongation rate and binding of NELF controls promoter-proximal pausing. (2013) (97)
- Mechanisms of transcription complex assembly. (1996) (95)
- Molecular mechanisms of ribosomal protein gene coregulation (2015) (95)
- The Nuclear Pore-Associated TREX-2 Complex Employs Mediator to Regulate Gene Expression (2015) (90)
- Dimerization of the TATA Binding Protein (*) (1995) (88)
- Changes in genomewide occupancy of core transcriptional regulators during heat stress. (2004) (88)
- Stable and dynamic nucleosome states during a meiotic developmental process. (2011) (86)
- NuA4-Directed Chromatin Transactions throughout the Saccharomyces cerevisiae Genome (2007) (81)
- High salt activation of recA protein ATPase in the absence of DNA. (1988) (81)
- Genomic organization of human transcription initiation complexes (2013) (80)
- Codependency of H2B monoubiquitination and nucleosome reassembly on Chd1. (2012) (79)
- Cloning and Biochemical Characterization of TAF-172, a Human Homolog of Yeast Mot1 (1998) (78)
- Phase separation directs ubiquitination of gene-body nucleosomes (2020) (78)
- A role for TBP dimerization in preventing unregulated gene expression. (1999) (77)
- Identification and Characterization of a Nuclease Specific for the 3′ End of the U6 Small Nuclear RNA* (1997) (75)
- The Histone Modification Domain of Paf1 Complex Subunit Rtf1 Directly Stimulates H2B Ubiquitylation through an Interaction with Rad6. (2016) (70)
- Dimerization of TFIID When Not Bound to DNA (1996) (67)
- Genome-Wide Relationships between TAF1 and Histone Acetyltransferases in Saccharomyces cerevisiae (2006) (66)
- Interplay of TBP inhibitors in global transcriptional control. (2002) (66)
- Simplified ChIP-exo assays (2018) (64)
- A high-resolution protein architecture of the budding yeast genome (2021) (63)
- Dynamic interplay of TFIIA, TBP and TATA DNA. (1997) (62)
- Genome-wide mapping of nucleosome positions in yeast using high-resolution MNase ChIP-Seq. (2012) (62)
- Widespread and precise reprogramming of yeast protein–genome interactions in response to heat shock (2018) (59)
- A comprehensive and high-resolution genome-wide response of p53 to stress. (2014) (59)
- recA protein binding to the heteroduplex product of DNA strand exchange. (1987) (59)
- Slow dimer dissociation of the TATA binding protein dictates the kinetics of DNA binding. (1997) (57)
- Variety of genomic DNA patterns for nucleosome positioning. (2011) (56)
- Structural evidence for Nap1‐dependent H2A–H2B deposition and nucleosome assembly (2016) (53)
- Extent of duplex DNA underwinding induced by RecA protein binding in the presence of ATP. (1989) (51)
- A preoccupied position on nucleosomes (2010) (46)
- Multiple factor resistance in maize to European corn borer (1984) (45)
- ATF4 Gene Network Mediates Cellular Response to the Anticancer PAD Inhibitor YW3-56 in Triple-Negative Breast Cancer Cells (2015) (44)
- TFIIA regulates TBP and TFIID dimers. (1999) (43)
- A TATA binding protein regulatory network that governs transcription complex assembly (2007) (40)
- Protein–DNA binding in high-resolution (2015) (39)
- Genome-wide determinants of sequence-specific DNA binding of general regulatory factors (2018) (38)
- Sequential Recruitment of SAGA and TFIID in a Genomic Response to DNA Damage in Saccharomyces cerevisiae (2010) (36)
- A new, highly conserved domain in Swi2/Snf2 is required for SWI/SNF remodeling (2011) (34)
- Unusual combinatorial involvement of poly-A/T tracts in organizing genes and chromatin in Dictyostelium (2012) (34)
- The Linker Histone Plays a Dual Role during Gametogenesis in Saccharomyces cerevisiae (2012) (30)
- Purification of the human TATA-binding protein, TBP. (1995) (29)
- Characterizing protein‐DNA binding event subtypes in ChIP‐exo data (2018) (28)
- Genome-Wide Organization of GATA1 and TAL1 Determined at High Resolution (2015) (27)
- In vivo genome-wide binding interactions of mouse and human constitutive androstane receptors reveal novel gene targets (2018) (27)
- Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae (2020) (25)
- Genomic Organization of Human Transcription Initiation Complexes (2016) (25)
- Structural and Functional Analysis of Mutations along the Crystallographic Dimer Interface of the Yeast TATA Binding Protein (2003) (22)
- Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4 (2017) (21)
- Genome-wide uniformity of human ‘open’ pre-initiation complexes (2017) (20)
- Dimer dissociation and thermosensitivity kinetics of the Saccharomyces cerevisiae and human TATA binding proteins. (1999) (19)
- Genome-wide analysis of protein-DNA interactions in living cells (2001) (17)
- Complete Khoisan and Bantu genomes from southern (2010) (17)
- The SAGA/TREX-2 subunit Sus1 binds widely to transcribed genes and affects mRNA turnover globally (2018) (16)
- Preparation of HeLa nuclear extracts. (1995) (15)
- Genome-wide Transcriptional Dependence on TAF1 Functional Domains* (2006) (14)
- The BN51 protein is a polymerase (Pol)-specific subunit of RNA Pol III which reveals a link between Pol III transcription and pre-rRNA processing (1995) (12)
- Retraction: Genomic organization of human transcription initiation complexes (2014) (11)
- Engineering Dimer-stabilizing Mutations in the TATA-binding Protein* (2004) (11)
- Genomic Organization of H2Av Containing Nucleosomes in Drosophila Heterochromatin (2011) (10)
- ATF 4 Gene Network Mediates Cellular Response to the Anticancer PAD Inhibitor YW 3-56 in Triple-Negative Breast Cancer Cells (2015) (9)
- Genome-Wide Modeling of Transcription Preinitiation Complex Disassembly Mechanisms using ChIP-chip Data (2010) (9)
- Genome-Wide Transcriptional Dependence on Conserved Regions of Mot1 (2011) (8)
- Correspondence: DNA shape is insufficient to explain binding (2017) (8)
- HATs off to PIC assembly. (2006) (7)
- Actin R256 Mono-methylation Is a Conserved Post-translational Modification Involved in Transcription (2020) (7)
- Inhibition of TATA Binding Protein Dimerization by RNA Polymerase III Transcription Initiation Factor Brf1* (2004) (6)
- Acute stress drives global repression through two independent RNA polymerase II stalling events in Saccharomyces (2021) (6)
- High similarity among ChEC-seq datasets (2021) (5)
- Chromatin meets RNA polymerase II (2007) (4)
- A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells (2021) (4)
- Ssl2/TFIIH function in transcription start site scanning by RNA polymerase II in Saccharomyces cerevisiae (2021) (4)
- Molecular biology: The ends justify the means (2013) (3)
- Structural evidence for Nap 1-dependent H 2 AH 2 B deposition and nucleosome assembly (2016) (3)
- Characterizing protein-DNA binding event subtypes in ChIP-exo data (2018) (3)
- Is acetylation the key to opening locked gates? (2004) (2)
- A ChIP-exo screen of 887 PCRP transcription factor antibodies in human cells (2020) (2)
- Promoter scanning during transcription initiation in Saccharomyces cerevisiae: Pol II in the “shooting gallery” (2019) (2)
- An integrated SAGA and TFIID PIC assembly pathway selective for poised and induced promoters (2022) (2)
- Genome-wide promoter assembly in E. coli measured at single-base resolution (2022) (2)
- Erratum: Genome-wide structure and organization of eukaryotic pre-initiation complexes (2012) (2)
- genome Saccharomyces and its regulators in the A canonical promoter organization of the transcription machinery Material Supplemental (2009) (2)
- Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein-DNA complexes (2019) (1)
- PEGR: a management platform for ChIP-based next generation sequencing pipelines (2020) (1)
- PEGR: a flexible management platform for reproducible epigenomic and genomic research (2022) (1)
- Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein–DNA complexes (2020) (1)
- Ultra-high resolution mapping of protein-genome interactions using ChIP-exo (2012) (1)
- Screening of PCRP transcription factor antibodies in biochemical assays (2020) (1)
- Screening of PCRP transcription factor antibodies in biochemical assays (2020) (1)
- A chromatin-associated regulator of RNA Polymerase III assembly at tRNA genes revealed by locus-specific proteomics (2023) (0)
- Simplified ChIP-exo assays (2018) (0)
- GenoPipe: identifying the genotype of origin within (epi)genomic datasets (2023) (0)
- Sequential recruitment of SAGA and TFIID in a genomic response to 1 (2010) (0)
- Computational Modelling of Genome-Side Transcription Assembly Networks Using a Fluidics Analogy (2008) (0)
- Gene Network Mediates Cellular Response to the Anticancer PAD Inhibitor YW 3-56 in Triple Negative Breast Cancer Cells (2015) (0)
- Structure of the Nap1 H2A H2B complex (2016) (0)
- Ssl 2 / TFIIH function in Transcription Start Site Scanning by RNA Polymerase II in 1 Saccharomyces cerevisiae 2 3 (0)
- STENCIL: A web templating engine for visualizing and sharing life science datasets (2021) (0)
- ScriptManager: an interactive platform for reducing barriers to genomics analysis (2022) (0)
- Correction: Computational Modelling of Genome-Wide Transcription Assembly Networks Using a Fluidics Analogy (2008) (0)
- Genome-wide interplay between chromatin and the transcription machinery (2013) (0)
- Protein architecture of the yeast genome. (2021) (0)
- The INO80 remodeler couples premature termination of mRNA synthesis with transcription elongation (2020) (0)
- Abstract IA02: Genomic organization of yeast chromatin and gene regulatory complexes (2016) (0)
- developmental process Stable and dynamic nucleosome states during a meiotic Material Supplemental (2011) (0)
- Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein–DNA complexes (2020) (0)
- PEGR: a flexible management platform for reproducible epigenomic and genomic research (2021) (0)
- Phase separation directs ubiquitination of gene-body nucleosomes (2020) (0)
- Genome-wide interplay between chromatin and the transcription machinery (2013) (0)
- The SAGA/TREX-2 subunit Sus1 binds widely to transcribed genes and affects mRNA turnover globally (2018) (0)
- ChExMix: A Method for Identifying and Classifying Protein-DNA Interaction Subtypes (2020) (0)
- Chromatin remodelling by INO80 at promoter proximal pause sites promotes premature termination of mRNA synthesis (2021) (0)
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What Schools Are Affiliated With B. Franklin Pugh?
B. Franklin Pugh is affiliated with the following schools:
