Barbara R. Holland
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New Zealand-born Australian mathematician
Barbara R. Holland's AcademicInfluence.com Rankings
Barbara R. Hollandmathematics Degrees
Mathematics
#6125
World Rank
#8543
Historical Rank
Measure Theory
#3850
World Rank
#4538
Historical Rank
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Mathematics
Barbara R. Holland's Degrees
- Bachelors Mathematics University of Auckland
- Masters Mathematics University of Auckland
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Why Is Barbara R. Holland Influential?
(Suggest an Edit or Addition)According to Wikipedia, Barbara Ruth Holland is a New Zealand born Australian scientist. She is a Professor of mathematics and member of the Theoretical Phylogenetics Group at the School of Mathematics & Physics at the University of Tasmania. Barbara is also a Chief Investigator at the ARC Centre of Excellence for Plant Success in Nature and Agriculture. She has made substantial contributions to the methods for reconstructing phylogenetic trees from DNA and protein sequence data. Holland has published over 50 journal articles, presented over 30 invited or keynote lectures, refereed five conference proceedings, 2 book chapters and 1 book review. She is a senior editor of the scientific journal Molecular Biology and Evolution.
Barbara R. Holland's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Analysis of Phylogenetics and Evolution with R (2007) (438)
- Using consensus networks to visualize contradictory evidence for species phylogeny. (2004) (160)
- Outgroup misplacement and phylogenetic inaccuracy under a molecular clock--a simulation study. (2003) (139)
- Analysis of Acorus calamus chloroplast genome and its phylogenetic implications. (2005) (133)
- Delta plots: a tool for analyzing phylogenetic distance data. (2002) (131)
- Optimizing automated AFLP scoring parameters to improve phylogenetic resolution. (2008) (131)
- Molecular Epidemiology of Campylobacter jejuni Isolates from Wild-Bird Fecal Material in Children's Playgrounds (2008) (131)
- Consensus Networks: A Method for Visualising Incompatibilities in Collections of Trees (2003) (120)
- Multiple maxima of likelihood in phylogenetic trees: an analytic approach (2000) (112)
- Using supernetworks to distinguish hybridization from lineage-sorting (2008) (109)
- Deciphering past human population movements in Oceania: provably optimal trees of 127 mtDNA genomes. (2006) (78)
- Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences (2006) (77)
- The problem of rooting rapid radiations. (2007) (76)
- Identifying cliques of convergent characters: concerted evolution in the cormorants and shags. (2010) (74)
- Sixty alleles of the ALS7 open reading frame in Candida albicans: ALS7 is a hypermutable contingency locus. (2003) (74)
- GHOST: Recovering Historical Signal from Heterotachously-evolved Sequence Alignments (2017) (69)
- Heterozygosity and functional allelic variation in the Candida albicans efflux pump genes CDR1 and CDR2 (2006) (67)
- Visualizing conflicting evolutionary hypotheses in large collections of trees: using consensus networks to study the origins of placentals and hexapods. (2005) (61)
- Untangling long branches: identifying conflicting phylogenetic signals using spectral analysis, neighbor-net, and consensus networks. (2005) (60)
- Extensive population decline in the Tasmanian devil predates European settlement and devil facial tumour disease (2014) (60)
- Is the general time-reversible model bad for molecular phylogenetics? (2011) (53)
- Patterns of Reproductive Isolation in Eucalyptus-A Phylogenetic Perspective. (2015) (51)
- Biogeography of circum-Antarctic springtails. (2010) (48)
- Mosaic Genomes of the Six Major Primate Lentivirus Lineages Revealed by Phylogenetic Analyses (2003) (41)
- Evolution of Campylobacter Species in New Zealand (2014) (39)
- Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Improved consensus network techniques for genome-scale phylogeny. (2006) (36)
- Imputing Supertrees and Supernetworks from Quartets (2006) (35)
- Live bearing promotes the evolution of sociality in reptiles (2017) (33)
- The identification of concerted convergence in insect heads corroborates palaeoptera. (2013) (31)
- Low-parameter phylogenetic inference under the general markov model. (2013) (30)
- Novel distances for dollo data. (2012) (28)
- A novel exploratory method for visual recombination detection (2003) (27)
- Treeness triangles: visualizing the loss of phylogenetic signal. (2007) (26)
- Conflict amongst chloroplast DNA sequences obscures the phylogeny of a group of Asplenium ferns. (2008) (26)
- Selective Advantages of a Parasexual Cycle for the Yeast Candida albicans (2015) (25)
- Phylogenetic Tree Reconstruction Accuracy and Model Fit when Proportions of Variable Sites Change across the Tree (2010) (25)
- Campylobacter jejuni colonization and population structure in urban populations of ducks and starlings in New Zealand (2013) (25)
- Genomic Scans across Three Eucalypts Suggest that Adaptation to Aridity is a Genome-Wide Phenomenon (2017) (24)
- Detecting Selection on Temporal and Spatial Scales: A Genomic Time-Series Assessment of Selective Responses to Devil Facial Tumor Disease (2016) (23)
- GHOST: Recovering Historical Signal from Heterotachously-evolved Sequence Alignments. (2019) (22)
- The MinMax Squeeze: guaranteeing a minimal tree for population data. (2004) (21)
- Searching factors causing implausible non-monophyly: ssu rDNA phylogeny of Isopoda Asellota (Crustacea: Peracarida) and faster evolution in marine than in freshwater habitats. (2003) (20)
- Accuracy of ancestral state reconstruction for non-neutral traits (2020) (20)
- Ancient DNA tracks the mainland extinction and island survival of the Tasmanian devil (2018) (19)
- Supermatrices, supertrees and serendipitous scaffolding: inferring a well-resolved, genus-level phylogeny of Styphelioideae (Ericaceae) despite missing data. (2012) (18)
- Delta additive and Delta ultra-additive maps, Gromov's trees, and the Farris transform (2005) (18)
- Missing Data and Influential Sites: Choice of Sites for Phylogenetic Analysis Can Be As Important As Taxon Sampling and Model Choice (2013) (18)
- Chemical signals in the echidna: differences between seasons, sexes, individuals and gland types (2014) (17)
- Mitogenomic diversity in Sacred Ibis Mummies sheds light on early Egyptian practices (2019) (17)
- Radiocarbon dating of Sacred Ibis mummies from ancient Egypt (2015) (16)
- Habitat type and dispersal mode underlie the capacity for plant migration across an intermittent seaway (2017) (16)
- Distribution of mutations distinguishing the most prevalent disease-causing Candida albicans genotype from other genotypes. (2009) (16)
- Maximum likelihood estimates of pairwise rearrangement distances. (2016) (16)
- The Algebra of the General Markov Model on Phylogenetic Trees and Networks (2010) (16)
- Analysis of a mechanistic Markov model for gene duplicates evolving under subfunctionalization (2017) (15)
- Imputing supertrees and supernetworks from quartets. (2007) (15)
- Gaps: an elusive source of phylogenetic information. (2012) (15)
- The Emergence of Predators in Early Life: There was No Garden of Eden (2009) (14)
- Faster exact maximum parsimony search with XMP (2011) (13)
- d Plots: A Tool for Analyzing Phylogenetic Distance Data (13)
- Estimating the Relative Roles of Recombination and Point Mutation in the Generation of Single Locus Variants in Campylobacter jejuni and Campylobacter coli (2012) (12)
- Impact of Genetic Background on Allele Selection in a Highly Mutable Candida albicans Gene, PNG2 (2010) (12)
- The K-bit-swap: a new genetic algorithm operator (2010) (12)
- Reconciling molecules and morphology: molecular systematics and biogeography of Neotropical blennies (Acanthemblemaria). (2012) (12)
- A new phylogenetic protocol: dealing with model misspecification and confirmation bias in molecular phylogenetics (2018) (12)
- LineageSpecificSeqgen: generating sequence data with lineage-specific variation in the proportion of variable sites (2008) (11)
- Evolutionary analyses of large data sets: Trees and beyond (2001) (11)
- Simulating and Summarizing Sources of Gene Tree Incongruence (2016) (10)
- hyperoverlap: Detecting biological overlap in n‐dimensional space (2020) (9)
- The Ancient Operational Code is Embedded in the Amino Acid Substitution Matrix and aaRS Phylogenies (2019) (7)
- Last hope for the doomed? Thoughts on the importance of a parasexual cycle for the yeast Candida albicans (2016) (7)
- Testing the Effect of Metabolic Rate on DNA Variability at the Intra-Specific Level (2010) (7)
- Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants (2016) (7)
- Reconstructing past changes in locus-specific recombination rates (2013) (6)
- Evolutionary Models (2020) (6)
- Ice formation and freezing damage in the foot muscle of the intertidal snail (1991) (6)
- The Rise of Statistical Phylogenetics (2013) (6)
- A futile act? Thoughts on the reproductive biology of Candida albicans (2004) (5)
- Upper bounds on maximum likelihood for phylogenetic trees (2003) (5)
- Benchmarking Methods of Protein Structure Alignment (2020) (4)
- Links between environment and stomatal size through evolutionary time in Proteaceae (2020) (4)
- Estimating the relative rate of recombination to mutation in bacteria from single-locus variants using composite likelihood methods (2014) (4)
- Phylogenetic Invariants and Markov Invariants (2016) (4)
- Decision support model for the patient admission scheduling problem with random arrivals and departures (2019) (4)
- Exploring the consequences of lack of closure in codon models (2017) (3)
- A tensorial approach to the inversion of group-based phylogenetic models (2012) (3)
- Correction: Impact of Genetic Background on Allele Selection in a Highly Mutable Candida albicans Gene, PNG2 (2010) (3)
- Comparing Partitioned Models to Mixture Models: Do Information Criteria Apply? (2022) (3)
- On the decision support model for the patient admission scheduling problem with random arrivals and departures: A solution approach (2020) (2)
- Phylogenetics: Parsimony, Networks, and Distance Methods (2008) (2)
- Level-dependent QBD models for the evolution of a family of gene duplicates (2020) (2)
- Comparison of Three Statistical Classification Techniques for Maser Identification (2016) (2)
- Distinguishing Between Convergent Evolution and Violation of the Molecular Clock for Three Taxa. (2017) (2)
- The Algebra of the General Markov Model on Phylogenetic Trees and Networks (2011) (1)
- Multi-Response Phylogenetic Mixed Models: Concepts and Application (2022) (1)
- Closed codon models: just a hopeless dream? (2018) (1)
- Dimension Reduction and Visualization for Single-copy Alignments via Generalized PCA (2018) (1)
- Molecular Evolution: A Statistical Approach. — By Ziheng Yang. (2015) (1)
- Low-parameter phylogenetic estimation under the general Markov model (2012) (1)
- LineageSpecificSeqgen: generating sequence data with lineage-specific variation in the proportion of variable sites (2009) (1)
- A review of visualisations of protein fold networks and their relationship with sequence and function (2022) (1)
- The Ancient Operational Code is Embedded in the Amino Acid Substitution Matrix and aaRS Phylogenies (2019) (0)
- Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants (2017) (0)
- OLD PLANTS, NEW TRICKS: APPLYING MACHINE LEARNING TECHNIQUES TO THE PALAEOBOTANICAL RECORD (2019) (0)
- Supplementary material from "Links between environment and stomatal size through evolutionary time in Proteaceae" (2020) (0)
- Developing a statistically powerful measure for phylogenetic tree inference using phylogenetic identities and Markov invariants (2016) (0)
- The Shape of Phylogenies Under Phase-Type Distributed Times to Speciation and Extinction (2021) (0)
- Live bearing promotes the evolution of sociality in reptiles (2017) (0)
- Last hope for the doomed? Thoughts on the importance of a parasexual cycle for the yeast Candida albicans (2015) (0)
- To gamma or not to gamma? Testing the fit of rates-across-sites models (2012) (0)
- The impracticalities of multiplicatively-closed codon models: a retreat to linear alternatives (2018) (0)
- A) A hybridization network (number 7 from Table 1) with two hybridization nodes (2011) (0)
- Evaluation of the Relative Performance of the Subflattenings Method for Phylogenetic Inference (2022) (0)
- Research Council and the Stint Foundation for support and K. D. Bennett (Uppsala University, Sweden) for helpful comments. (2004) (0)
- Unsupervized Quantification of Demographic Structure for Single-copy Alignments (2018) (0)
- Estimating the Relative Roles of Recombination and Point Mutation in the Generation of Single Locus Variants in Campylobacter jejuni and Campylobacter coli (2012) (0)
- Accuracy of ancestral state reconstruction for non-neutral traits (2020) (0)
- Endophyte survival without sex (2006) (0)
- Reconstructing past changes in locus-specific recombination rates (2013) (0)
- A tensorial approach to the inversion of group-based phylogenetic models (2014) (0)
- Ancient and modern genomes reveal microsatellites maintain a dynamic equilibrium through deep time (2020) (0)
- Performance of AIC and BIC in Selecting Partition Models and Mixture Models. (2022) (0)
- Analysis of a mechanistic Markov model for gene duplicates evolving under subfunctionalization (2017) (0)
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