Ben Langmead
#42,124
Most Influential Person Now
Researcher
Ben Langmead's AcademicInfluence.com Rankings
Ben Langmeadcomputer-science Degrees
Computer Science
#2647
World Rank
#2768
Historical Rank
Database
#1221
World Rank
#1287
Historical Rank
Download Badge
Computer Science
Ben Langmead's Degrees
- PhD Computer Science University of Maryland, College Park
- Masters Computer Science University of Maryland, College Park
- Bachelors Computer Science University of Maryland, College Park
Similar Degrees You Can Earn
Why Is Ben Langmead Influential?
(Suggest an Edit or Addition)According to Wikipedia, Ben Langmead is a computational biologist and associate professor in the Computational Biology & Medicine Group at Johns Hopkins University. Education Langmead gained his Bachelor of Arts degree in computer science from Columbia College, Columbia University in 2003. He gained both his Master of Science and PhD degrees in computer science from the University of Maryland, supervised by Steven Salzberg, in 2009 and 2012, respectively.
Ben Langmead's Published Works
Published Works
- Fast gapped-read alignment with Bowtie 2 (2012) (34760)
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome (2009) (19739)
- HISAT: a fast spliced aligner with low memory requirements (2015) (11758)
- Improved metagenomic analysis with Kraken 2 (2019) (1854)
- Tackling the widespread and critical impact of batch effects in high-throughput data (2010) (1635)
- Aligning Short Sequencing Reads with Bowtie (2010) (1064)
- BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions (2012) (588)
- Ballgown bridges the gap between transcriptome assembly and expression analysis (2015) (523)
- Searching for SNPs with cloud computing (2009) (520)
- Cloud-scale RNA-sequencing differential expression analysis with Myrna (2010) (341)
- Reproducible RNA-seq analysis using recount2 (2017) (311)
- Scaling read aligners to hundreds of threads on general-purpose processors (2017) (308)
- Cloud Computing and the DNA Data Race (2010) (303)
- Reversible switching between epigenetic states in honeybee behavioral subcastes (2012) (292)
- Polyester: Simulating RNA-Seq Datasets With Differential Transcript Expression (2014) (220)
- Lighter: fast and memory-efficient sequencing error correction without counting (2014) (203)
- ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets (2011) (166)
- Computational pan-genomics: status, promises and challenges (2016) (145)
- Large-scale hypomethylated blocks associated with Epstein-Barr virus–induced B-cell immortalization (2014) (116)
- Cloud computing for genomic data analysis and collaboration (2018) (104)
- Cloud computing for genomic data analysis and collaboration (2018) (102)
- Alignment of Next-Generation Sequencing Reads. (2015) (91)
- Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive (2016) (87)
- The DNA data deluge (2013) (67)
- Dashing: fast and accurate genomic distances with HyperLogLog (2018) (61)
- Rail‐RNA: scalable analysis of RNA‐seq splicing and coverage (2016) (57)
- Flexible expressed region analysis for RNA-seq with derfinder (2016) (53)
- recount3: summaries and queries for large-scale RNA-seq expression and splicing (2021) (48)
- Efficient Construction of a Complete Index for Pan-Genomics Read Alignment (2018) (48)
- FORGe: prioritizing variants for graph genomes (2018) (48)
- Genotyping in the Cloud with Crossbow (2012) (40)
- Flexible isoform-level differential expression analysis with Ballgown (2014) (40)
- Flexible analysis of transcriptome assemblies with Ballgown (2014) (39)
- ASCOT identifies key regulators of neuronal subtype-specific splicing (2018) (38)
- Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space (2015) (36)
- Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples (2017) (29)
- Reference flow: reducing reference bias using multiple population genomes (2021) (26)
- The DNA Data Deluge: Fast, efficient genome sequencing machines are spewing out more data than geneticists can analyze. (2013) (19)
- How bioinformatics and open data can boost basic science in countries and universities with limited resources (2019) (18)
- Recounting the FANTOM CAGE-Associated Transcriptome (2019) (18)
- MONI: A Pangenomic Index for Finding Maximal Exact Matches (2022) (17)
- Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia (2019) (17)
- Analyzing whole genome bisulfite sequencing data from highly divergent genotypes (2018) (15)
- Pan-genomic matching statistics for targeted nanopore sequencing (2021) (14)
- Metagenome analysis using the Kraken software suite (2022) (14)
- A tandem simulation framework for predicting mapping quality (2017) (13)
- Megadepth: efficient coverage quantification for BigWigs and BAMs (2020) (13)
- Cloud-scale RNA-sequencing differential (2010) (13)
- Vargas: heuristic-free alignment for assessing linear and graph read aligners (2019) (12)
- PHONI: Streamed Matching Statistics with Multi-Genome References (2020) (10)
- Analysis of somatic mutations in 131 human brains reveals aging-associated hypermutability (2022) (10)
- Reducing reference bias using multiple population reference genomes (2020) (9)
- HISAT: Hierarchical Indexing for Spliced Alignment of Transcripts (2014) (9)
- Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells (2019) (9)
- Widespread splicing of repetitive element loci into coding regions of gene transcripts. (2016) (8)
- LevioSAM: fast lift-over of variant-aware reference alignments (2021) (8)
- Matching Reads to Many Genomes with the r-Index (2019) (8)
- Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce (2016) (8)
- Faster sequence alignment through GPU-accelerated restriction of the seed-and-extend search space (2014) (8)
- Choice of reference genome can introduce massive bias in bisulfite sequencing data (2016) (8)
- recount: A large-scale resource of analysis-ready RNA-seq expression data (2016) (8)
- MONI: A Pangenomics Index for Finding MEMs (2021) (7)
- Improved metagenomic analysis with Kraken 2 (2019) (7)
- Highly scalable short read alignment with the Burrows-Wheeler transform and cloud computing (2009) (6)
- Rail-RNA: Scalable analysis of RNA-seq splicing and coverage (2015) (5)
- Lighter: fast and memory-efficient error correction without counting (2014) (5)
- Boiler: lossy compression of RNA-seq alignments using coverage vectors (2016) (5)
- Two-stage Linked Component Analysis for Joint Decomposition of Multiple Biologically Related Data Sets (2022) (5)
- Human splicing diversity across the Sequence Read Archive (2016) (5)
- Practical software for big genomics data (2013) (4)
- Finding Maximal Exact Matches Using the r-Index (2022) (4)
- Fast and Space-Efficient Construction of AVL Grammars from the LZ77 Parsing (2021) (4)
- Samovar: Single-Sample Mosaic Single-Nucleotide Variant Calling with Linked Reads (2019) (3)
- Improved sequence mapping using a complete reference genome and lift-over (2022) (3)
- Fast and memory-efficient scRNA-seq k-means clustering with various distances (2021) (3)
- Dashing 2: genomic sketching with multiplicities and locality-sensitive hashing (2023) (3)
- Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development (2023) (2)
- Abstract 2297: Differential analysis of gene expression across the human genome using recount2 and FANTOM-CAT (2018) (2)
- Snaptron: querying and visualizing splicing across tens of thousands of RNA-seq samples (2017) (2)
- GEUVADIS expressed regions coverage matrix (2015) (2)
- Using bioinformatics training to boost research capacities in resource-limited regions (2018) (2)
- Rail-dbGaP: a protocol and tool for analyzing protected genomic data in a commercial cloud (2015) (2)
- SPUMONI 2: Improved pangenome classification using a compressed index of minimizer digests (2022) (1)
- Reference flow VCF for pre-built genomes (2020) (1)
- Lighter: fast and memory-efficient sequencing error correction without counting (2014) (1)
- Samovar: Single-sample mosaic SNV calling with linked reads (2019) (1)
- Cell-specific regulation of gene expression using splicing-dependent frameshifting (2022) (1)
- Pangenomic Genotyping with the Marker Array (2022) (1)
- Algorithms and High Performance Computing Approaches for sequencing-based Comparative genomics (2012) (1)
- Dashing: fast and accurate genomic distances with HyperLogLog (2019) (1)
- FORGe: prioritizing variants for graph genomes (2018) (1)
- Measurement, Summary, and Methodological Variation in RNA-sequencing (2014) (1)
- Prefix-free parsing for building big BWTs (2019) (0)
- Genomic sketching with HyperLogLog (2019) (0)
- A tandem simulation framework for predicting mapping quality (2017) (0)
- recount3: summaries and queries for large-scale RNA-seq expression and splicing (2021) (0)
- A scalable and unbiased discordance metric with H+ (2022) (0)
- Abstract 908: Comprehensive analysis of alternative polyadenylation across cancer phenotypes (2019) (0)
- minicore: Fast scRNA-seq clustering with various distances (2021) (0)
- Linked Lists (2019) (0)
- Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive (2016) (0)
- LevioSAM: Fast lift-over of alternate reference alignments (2021) (0)
- Abstract 1219: Unraveling alternative polyadenylation in prostate cancer with CORE-PAD (2022) (0)
- How bioinformatics and open data can boost basic science in countries and universities with limited resources (2019) (0)
- DandD: efficient measurement of sequence growth and similarity (2023) (0)
- Reproducible RNA-seq analysis using recount2 (2017) (0)
- Pangenomic genotyping with the marker array (2023) (0)
- ASCOT identifies key regulators of neuronal subtype-specific splicing (2020) (0)
- Two-stage linked component analysis for joint decomposition of multiple biologically related data sets. (2022) (0)
- WGT: Tools and algorithms for recognizing, visualizing and generating Wheeler graphs (2023) (0)
- Title of Document : Highly Scalable Short Read Alignment with the Burrows-Wheeler Transform and Cloud Computing (2009) (0)
- Widespread splicing of repetitive element loci into coding regions of gene transcripts. (2016) (0)
- A bit of history : DNA sequencing in 1977 (2004) (0)
- Supplement for : FORGe : prioritizing variants for graph genomes (2018) (0)
- REPAC: analysis of alternative polyadenylation from RNA-sequencing data (2023) (0)
- Reference flow: reducing reference bias using multiple population genomes (2021) (0)
- Unleashing alternative polyadenylation analyses with REPAC (2022) (0)
This paper list is powered by the following services:
Other Resources About Ben Langmead
What Schools Are Affiliated With Ben Langmead?
Ben Langmead is affiliated with the following schools: