Blaž Zupan
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Slovenian computer scientist
Blaž Zupan's AcademicInfluence.com Rankings
Blaž Zupancomputer-science Degrees
Computer Science
#3419
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#3588
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Data Mining
#198
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#199
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Machine Learning
#2422
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#2452
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Artificial Intelligence
#4059
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#4117
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Computer Science
Blaž Zupan's Degrees
- PhD Computer Science University of Ljubljana
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Why Is Blaž Zupan Influential?
(Suggest an Edit or Addition)According to Wikipedia, Blaž Zupan is a Slovenian computer scientist and university professor, * 26 January 1968, Postojna, Slovenia. Career After finishing the Bežigrad Grammar School in 1986, Zupan graduated in computer science at the University of Ljubljana in 1991. Next, he received an MS degree in computer science from University of Houston in 1993 under the mentorship of prof. dr. Albert Mo Kim Cheng. In 1997 he received his PhD degree in computer science from the University of Ljubljana under the mentorship of prof. dr. Ivan Bratko. After spending two years as a postdoc researcher at the Jožef Stefan Institute in Ljubljana, Zupan became in 1999 an assistant professor at the Faculty of Computer and Information Science at the University of Ljubljana, where in 2009 he became a full professor. In 2010 Zupan founded the Bioinformatics Laboratory which has currently more than 20 members. In the years 2006–2008 and 2010–2012 Zupan served as the vice dean for research and development. Blaž Zupan still collaborates with scientists in Houston, US, where he has a position of a visiting professor at Baylor College of Medicine. In the academic year 2008–2009 Zupan was a visiting scientist in the Center for tissue engineering at University of Pavia in Italy.
Blaž Zupan's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Orange: data mining toolbox in python (2013) (1326)
- iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution (2010) (1029)
- Characterizing the RNA targets and position-dependent splicing regulation by TDP-43. (2011) (848)
- Predictive data mining in clinical medicine: Current issues and guidelines (2008) (790)
- Orange: From Experimental Machine Learning to Interactive Data Mining (2004) (489)
- Rule Evaluation Measures: A Unifying View (1999) (446)
- Spam Filtering Using Statistical Data Compression Models (2006) (282)
- Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain (2012) (259)
- iCLIP Predicts the Dual Splicing Effects of TIA-RNA Interactions (2010) (239)
- Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions (2012) (218)
- iCLIP - Transcriptome-wide Mapping of Protein-RNA Interactions with Individual Nucleotide Resolution (2011) (204)
- From hype to reality: data science enabling personalized medicine (2018) (203)
- Analysis of alternative splicing associated with aging and neurodegeneration in the human brain. (2011) (199)
- Data Fusion by Matrix Factorization (2013) (190)
- Conserved developmental transcriptomes in evolutionarily divergent species (2010) (167)
- Microarray data mining with visual programming (2005) (159)
- Polymorphic Members of the lag Gene Family Mediate Kin Discrimination in Dictyostelium (2009) (150)
- Nomograms for Visualization of Naive Bayesian Classifier (2004) (147)
- Intelligent Data Analysis in Medicine and Pharmacology (1997) (144)
- Characterising the RNA targets and position-dependent splicing regulation by TDP-43; implications for neurodegenerative diseases (2011) (134)
- Genome-Wide Localization Study of Yeast Pex11 Identifies Peroxisome–Mitochondria Interactions through the ERMES Complex (2015) (126)
- Machine Learning for Survival Analysis: A Case Study on Recurrence of Prostate Cancer (1999) (119)
- Epistasis analysis with global transcriptional phenotypes (2005) (118)
- Applications of qualitative multi-attribute decision models in health care (2000) (112)
- Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins (2016) (101)
- DEX Methodology: Three Decades of Qualitative Multi-Attribute Modeling (2013) (98)
- Discovering disease-disease associations by fusing systems-level molecular data (2013) (97)
- VizRank: Data Visualization Guided by Machine Learning (2006) (92)
- Nomograms for visualizing support vector machines (2005) (91)
- Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L (2014) (88)
- A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family (2017) (85)
- openTSNE: a modular Python library for t-SNE dimensionality reduction and embedding (2019) (85)
- Machine Learning by Function Decomposition (1997) (83)
- dictyBase—a Dictyostelium bioinformatics resource update (2008) (82)
- Learning by Discovering Concept Hierarchies (1999) (81)
- dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface (2009) (80)
- miR669a and miR669q prevent skeletal muscle differentiation in postnatal cardiac progenitors (2011) (76)
- NIMFA: A Python Library for Nonnegative Matrix Factorization (2012) (76)
- A function-decomposition method for development of hierarchical multi-attribute decision models (2004) (73)
- Towards knowledge-based gene expression data mining (2007) (73)
- Visualization-based cancer microarray data classification analysis (2007) (73)
- Developmentally Regulated DNA Methylation in Dictyostelium discoideum (2006) (66)
- GenePath: a system for automated construction of genetic networks from mutant data (2003) (64)
- Predictive model for survival at the conclusion of a damage control laparotomy. (2000) (62)
- FreeViz - An intelligent multivariate visualization approach to explorative analysis of biomedical data (2007) (61)
- Attribute Interactions in Medical Data Analysis (2003) (59)
- Intelligent Data Analysis in Medicine (2000) (59)
- Bacterial Discrimination by Dictyostelid Amoebae Reveals the Complexity of Ancient Interspecies Interactions (2013) (56)
- Feature Transformation by Function Decomposition (1998) (54)
- Leaps and lulls in the developmental transcriptome of Dictyostelium discoideum (2015) (53)
- Orange: Data Mining Fruitful and Fun - A Historical Perspective (2013) (48)
- Data Mining in Medicine (2010) (48)
- Assessment of Machine Learning Reliability Methods for Quantifying the Applicability Domain of QSAR Regression Models (2014) (43)
- Report on EU–USA Workshop: How Systems Biology Can Advance Cancer Research (27 October 2008) (2009) (43)
- VizRank: finding informative data projections in functional genomics by machine learning (2005) (42)
- Polyketide synthase genes and the natural products potential of Dictyostelium discoideum (2007) (42)
- Feature mining and predictive model construction from severe trauma patient's data (2001) (41)
- Intelligent Data Analysis for Medical Diagnosis: Using Machine Learning and Temporal Abstraction (1998) (39)
- Open-source tools for data mining. (2008) (38)
- Modelling impacts of cropping systems: Demands and solutions for DEX methodology (2008) (38)
- Democratized image analytics by visual programming through integration of deep models and small-scale machine learning (2019) (36)
- SNPsyn: detection and exploration of SNP–SNP interactions (2011) (35)
- Optimization of Rule-Based Systems Using State Space Graphs (1998) (32)
- Gene network inference by fusing data from diverse distributions (2015) (32)
- Computational approaches for the genetic and phenotypic characterization of a Saccharomyces cerevisiae wine yeast collection (2009) (31)
- Matrix Factorization-Based Data Fusion for Gene Function Prediction in Baker's Yeast and Slime Mold (2013) (30)
- proDEX - A DSS tool for environmental decision-making (2006) (29)
- Low prevalence of active COVID-19 in Slovenia: a nationwide population study of a probability-based sample (2020) (27)
- What can education bring to entrepreneurship? Formal versus non-formal education (2020) (26)
- TA-clustering: Cluster analysis of gene expression profiles through Temporal Abstractions (2005) (26)
- The development of an entrepreneurial mindset in primary education (2018) (26)
- ORANGE : DATA MINING FRUITFUL AND FUN (2012) (26)
- Gene Prioritization by Compressive Data Fusion and Chaining (2015) (25)
- THE ROLE OF WOMEN IN FAMILY BUSINESSES (2009) (25)
- Knowledge-based data analysis and interpretation (2006) (25)
- GenePath: a system for inference of genetic networks and proposal of genetic experiments (2003) (25)
- Gene discovery by chemical mutagenesis and whole-genome sequencing in Dictyostelium (2016) (23)
- Intelligent Data Analysis In Medicine And Pharmacology: An Overview (1997) (22)
- OCT4 and the acquisition of oocyte developmental competence during folliculogenesis. (2012) (22)
- Jumping across biomedical contexts using compressive data fusion (2016) (22)
- Computational Models for Prediction of Yeast Strain Potential for Winemaking from Phenotypic Profiles (2013) (22)
- Predictive model for estimating risk of crush syndrome: a data mining approach. (2007) (21)
- Stage prediction of embryonic stem cell differentiation from genome-wide expression data (2011) (21)
- Computational models reveal genotype–phenotype associations in Saccharomyces cerevisiae (2014) (21)
- Heterogeneous computing architecture for fast detection of SNP-SNP interactions (2014) (21)
- Hands-on training about overfitting (2021) (20)
- Constructing Intermediate Concepts by Decomposition of Real Functions (1997) (20)
- Collective Pairwise Classification for Multi-Way Analysis of Disease and Drug Data (2016) (20)
- Subgroup discovery in data sets with multi-dimensional responses (2011) (20)
- Decisions at Hand: A Decision Support System on Handhelds (2001) (20)
- Text Mining approaches for Automated Literature Knowledge Extraction and Representation (2010) (20)
- Orange and Decisions-at-Hand: Bridging Predictive Data Mining and Decision Support (2001) (19)
- Data mining techniques and applications in medicine. (1999) (19)
- BzpF is a CREB-like transcription factor that regulates spore maturation and stability in Dictyostelium. (2011) (19)
- dictyExpress: a web-based platform for sequence data management and analytics in Dictyostelium and beyond (2017) (19)
- Medical informatics Europe '99 (1999) (19)
- GenePath: from mutations to genetic networks and back (2005) (18)
- Predicting Patient’s Long-Term Clinical Status after Hip Arthroplasty Using Hierarchical Decision Modelling and Data Mining (2001) (18)
- Abductive Inference of Genetic Networks (2001) (16)
- Matrix factorization-based data fusion for drug-induced liver injury prediction (2014) (16)
- Naive Bayesian-Based Nomogram for Prediction of Prostate Cancer Recurrence (1999) (15)
- ABC Transporters in Dictyostelium discoideum Development (2013) (15)
- New components of the Dictyostelium PKA pathway revealed by Bayesian analysis of expression data (2010) (15)
- Function Decomposition in Machine Learning (2001) (15)
- Seroprevalence of severe acute respiratory syndrome coronavirus 2 in Slovenia: results of two rounds of a nationwide population study on a probability-based sample, challenges and lessons learned (2021) (14)
- Relating clinical and neurophysiological assessment of spasticity by machine learning (1997) (14)
- Conquering the Curse of Dimensionality in Gene Expression Cancer Diagnosis: Tough Problem, Simple Models (2005) (14)
- Embedding to Reference t-SNE Space Addresses Batch Effects in Single-Cell Classification (2019) (14)
- Fast optimization of non-negative matrix tri-factorization (2019) (13)
- Transcriptional profiling of Dictyostelium with RNA sequencing. (2013) (13)
- iDiscover – an intelligent assistant for integrative analysis of transcriptome data (2011) (13)
- Sieve-based relation extraction of gene regulatory networks from biological literature (2015) (12)
- Intelligent Data Analysis – Special Issue (2001) (12)
- Genome Sequence of a Lethal Strain of Xylem-Invading Verticillium nonalfalfae (2018) (12)
- Intelligent Data Analysis in Medicine and Pharmacology: A Position Statement (2000) (12)
- Data Imputation in Epistatic MAPs by Network-Guided Matrix Completion (2015) (12)
- Subgroup Discovery in Data Sets with Multi-dimensional Responses: A Method and a Case Study in Traumatology (2009) (12)
- FreeViz - An Intelligent Visualization Approach for Class-Labeled Multidimensional Data Sets (2005) (12)
- Ninth International Workshop on Inductive Logic Programming (ILP'99) (1999) (11)
- Educational Model for Promoting Creativity and Innovation in Primary Schools (2015) (11)
- A Dataset Decomposition Approach to Data Mining and Machine Discovery (1997) (11)
- EXPERIMENTAL COMPARISON OF THREE SUBGROUP DISCOVERY ALGORITHMS: ANALYSING BRAIN ISCHAEMIA DATA (2005) (10)
- Textual features for corpus visualization using correspondence analysis (2009) (10)
- Extracting Gene Regulation Networks Using Linear-Chain Conditional Random Fields and Rules (2013) (10)
- Experimental Evaluation of Three Partition Selection Criteria for Decision Table Decomposition (1998) (10)
- Supporting Regenerative Medicine by Integrative Dimensionality Reduction (2012) (9)
- SUBGROUP VISUALIZATION (2005) (8)
- scOrange—a tool for hands-on training of concepts from single-cell data analytics (2019) (8)
- Scalable non-negative matrix tri-factorization (2017) (7)
- Acquiring background knowledge for machine learning using function decomposition: a case study in rheumatology (1998) (7)
- Integrating Decision Support and Data Mining by Hierarchical Multi-Attribute Decision Models (2001) (7)
- Family Business as a Career Opportunity for Women (2011) (6)
- Web-Enabled Knowledge-Based Analysis of Genetic Data (2001) (6)
- On utility of gene set signatures in gene expression-based cancer class prediction (2009) (6)
- Optimization of rule-based expert systems via state transition system construction (1994) (5)
- Induction of Concept Hierarchies from Noisy Data (2000) (5)
- How to Create a Successful Regional Startup Ecosystem: A Policy-making Analysis (2019) (5)
- Does replication groups scoring reduce false positive rate in SNP interaction discovery? (2010) (5)
- Rule-based Clustering for Gene Promoter Structure Discovery (2009) (5)
- GenePath: A Computer Program for Genetic Pathway Discovery from Mutant Data (2001) (5)
- Discovery of Genetic Networks Through Abduction and Qualitative Simulation (2007) (5)
- Survival regression by data fusion (2014) (5)
- Team ULjubljana's Solution to the JRS 2012 Data Mining Competition (2012) (4)
- RICERCANDO: Data Mining Toolkit for Mobile Broadband Measurements (2019) (4)
- Gene network inference by probabilistic scoring of relationships from a factorized model of interactions (2014) (4)
- Acquiring and Validating Background Knowledge for Machine Learning Using Function Decomposition (1997) (4)
- Schools and Promotion of Innovation (2013) (4)
- Qualitative Model Approach to Computer Assisted Reasoning in Physiology (1998) (4)
- FragViz: visualization of fragmented networks (2010) (4)
- On Quality of Different Annotation Sources for Gene Expression Analysis (2009) (4)
- Static Stability Analysis Method for Fuzzy Rule-Chaining Real-Time Systems (1996) (3)
- Does Decentralized Governance Lead to Less Scientific Output? A Fuzzy Set Analysis of Fiscal Decentralization and Determinants of National Innovation Capacity (2017) (3)
- Concept Discovery by Decision Table Decomposition and its Application in Neurophysiology (1997) (3)
- Transcriptional milestones in Dictyostelium development (2021) (3)
- Inference of the molecular mechanism of action from genetic interaction and gene expression data. (2010) (3)
- DEX METHODOLOGY : THIRTY THREE YEARS OF QUALITATIVE MULTI-ATTRIBUTE MODELING (2012) (3)
- Concurrent software architectures for exploratory data analysis (2015) (3)
- Knowledge-based bioinformatics for the study of mammalian oocytes. (2012) (3)
- Towards Practical PPM Spam Filtering: Experiments for the TREC 2006 Spam Track (2006) (3)
- Interest Propagation for Knowledge Extraction and Representation (2013) (3)
- Heterogeneous computing architecture for fast detection of SNP-SNP interactions (2014) (2)
- Response-time optimization of rule-based expert systems (1994) (2)
- ANALYSIS OF PREFERENCE MAPS USING DATA MINING METHODS ANALIZA PREFERENČNIH KART Z METODAMI ODKRIVANJA ZNANJA IZ PODATKOV (2009) (2)
- Ranking and 1-Dimensional Projection of Cell Development Transcription Profiles (2011) (2)
- The Role of Women in Family Businesses: The Case of Slovenia (2013) (2)
- Hierarchical Multi-Attribute Decision Models and Their Application in Health Care (1999) (2)
- Integrative Clustering by Nonnegative Matrix Factorization Can Reveal Coherent Functional Groups From Gene Profile Data (2015) (2)
- Clustering gene expression data with Temporal Abstractions (2004) (2)
- Schools and Promotion of Innovation / Škole i promicanje inovacije (2013) (2)
- UNLOCKING LATENT CREATIVITY WITH RAPID PROTOTYPING SPODBUJANJE LATENTNE USTVARJALNOSTI S HITRIM PROTOTIPIRANJEM (2017) (1)
- A Data Mining Library for miRNA Annotation and Analysis (2011) (1)
- (re)Designing an Entrepreneurship Course Using Design Thinking: A Case Study of a Novel Course (re)Design Approach (2014) (1)
- Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions (2012) (1)
- Conformal Prediction with Orange (2021) (1)
- Data-Driven Revision of Decision Models (2009) (1)
- Decompositions, dependencies, and Bayesian networks (1999) (1)
- Simple and effective visual models for gene expression cancer diagnostics (2005) (1)
- Low Prevalence of Active and Past SARS-CoV-2 Infections in Slovenia: A Nationwide Population Study on Probability-Based Sample (2020) (1)
- The phenotypic landscape of a Saccharomyces cerevisiae strain collection (2012) (0)
- Nomograms for Visualizing Linear Support Vector Machines (2004) (0)
- Conformal prediction and its integration within visual analytics toolbox (2021) (0)
- Network-based analysis of stem cells differentiation (2012) (0)
- dictyExpress: a web-based platform for sequence data management and analytics in Dictyostelium and beyond (2017) (0)
- Scalable non-negative matrix tri-factorization (2017) (0)
- Orthogonal nonnegative factorization-based analysis of nineteen protein-RNA interaction CLIP data sets (2015) (0)
- ICount - comprehensive analysis of iCLIP data (2010) (0)
- Bioinformatic approaches for the genetic and phenotypic characterization of a Saccharomyces cerevisiae wine yeast collection (2008) (0)
- Biomechanical and clinical alterations of the hip joint following femoral neck fracture and implantation of bipolar hip endoprosthesis. (2010) (0)
- Jumping across gene-disease contexts using compressive data fusion (2016) (0)
- Transformation of attribute space by function decomposition (2001) (0)
- B Network-based analysis of stem cells differentiation (2012) (0)
- Scalable non-negative matrix tri-factorization : Supplementary material (2017) (0)
- GenePath: software for genetic network exploration (2002) (0)
- The genetic and phenotypic characterization of a saccharomyces cerevisiae wine yeast collection using bioinformatic approaches (2008) (0)
- Modular hierarchical modelling with SIMCOS language (2005) (0)
- Slovenian national health insurance card: The next step (1999) (0)
- Integrate everything but the kitchen sink: Data set selection and sensitivity estimation in collective factor models (2015) (0)
- Information security management in healthcare organizations in Slovenia (2005) (0)
- HANDHELDS AND REGISTRY OF PATIENTS WITH WRIST FRACTURES (2002) (0)
- UNLOCKING LATENT CREATIVITY WITH RAPID PROTOTYPING (2017) (0)
- Acceleration of information-theoretic data analysis with graphics processing units (2012) (0)
- Visualization of Biological Data - From Analysis to Communication (Dagstuhl Seminar 21401) (2021) (0)
- 2 Material and Methods 2 . 1 Study area and preference maps (2010) (0)
- Finding Patterns in Class-Labeled Data Using Data Visualization (2008) (0)
- Construction and application of hierarchical socioeconomic decision models (2002) (0)
- Leaps and lulls in the developmental transcriptome of Dictyostelium discoideum (2015) (0)
- Efficient Matching of Single Cells and Cell Types (2022) (0)
- Sieve-based relation extraction of gene regulatory networks from biological literature (2015) (0)
- Study of genetic and phenotypic relationships in a Saccharomyces cerevisiae strain collection using computational approaches (2012) (0)
- Orange and Decisions-at-Hand : Bridging Medical Data Mining and Decision Support (2001) (0)
- Pheno-metabolomics characterization of a Saccharomyces cerevisiae strain collection by integrative data analysis approaches (2013) (0)
- Biomedical data fusion by simultaneous matrix tri-factorization (2014) (0)
- Imputation of Quantitative Genetic Interactions in Epistatic MAPs by Interaction Propagation Matrix Completion (2014) (0)
- Prognostic Model for Terminally Ill Cancer Patients on Laboratory Data (2002) (0)
- SLOVENICA 9 15 21 3 3 1 4 1 Enhanced Electrostatic AChE Activity of Abnormally Hydrophobic Environment in Alzheimer ' s Plaques (2008) (0)
- A Subgroup Discovery Approach for Relating Chemical Structure and Phenotype Data in Chemical Genomics (2010) (0)
- Similarity of Transcription Profiles for Genes in Gene Sets (2011) (0)
- A Sixth International Workshop on Intelligent Data Analysis in Medicine and Pharmacology (IDAMAP-2001) (2001) (0)
- A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family (2017) (0)
- Explainable Point-Based Document Visualizations (2021) (0)
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