Buyong Ma
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Computer Science
Buyong Ma's Degrees
- PhD Computer Science Stanford University
- Masters Computer Science University of California, Berkeley
- Bachelors Computer Science University of California, Berkeley
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(Suggest an Edit or Addition)Buyong Ma's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Principles of docking: An overview of search algorithms and a guide to scoring functions (2002) (1233)
- Is allostery an intrinsic property of all dynamic proteins? (2004) (789)
- Folding funnels, binding funnels, and protein function (1999) (614)
- Aβ(1–42) Fibril Structure Illuminates Self-recognition and Replication of Amyloid in Alzheimer’s (2015) (603)
- Protein–protein interactions: Structurally conserved residues distinguish between binding sites and exposed protein surfaces (2003) (571)
- Folding and binding cascades: Dynamic landscapes and population shifts (2008) (562)
- Principles of protein-protein interactions: what are the preferred ways for proteins to interact? (2008) (553)
- Folding funnels and binding mechanisms. (1999) (541)
- Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues. (2005) (477)
- Stabilities and conformations of Alzheimer's β-amyloid peptide oligomers (Aβ16–22, Aβ16–35, and Aβ10–35): Sequence effects (2002) (378)
- Multiple diverse ligands binding at a single protein site: A matter of pre‐existing populations (2002) (373)
- The origin of allosteric functional modulation: multiple pre-existing pathways. (2009) (339)
- Folding and binding cascades: shifts in energy landscapes. (1999) (334)
- Conservation of polar residues as hot spots at protein interfaces (2000) (292)
- Zinc ions promote Alzheimer Aβ aggregation via population shift of polymorphic states (2010) (266)
- Polymorphism in Alzheimer Aβ Amyloid Organization Reflects Conformational Selection in a Rugged Energy Landscape (2010) (252)
- Protein Ensembles: How Does Nature Harness Thermodynamic Fluctuations for Life? The Diverse Functional Roles of Conformational Ensembles in the Cell. (2016) (248)
- Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis. (2021) (236)
- Simulations as analytical tools to understand protein aggregation and predict amyloid conformation. (2006) (213)
- Dynamic allostery: linkers are not merely flexible. (2011) (196)
- Enzyme dynamics point to stepwise conformational selection in catalysis. (2010) (194)
- Protein-protein interactions: hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: implications for docking. (2004) (189)
- Structured disorder and conformational selection (2001) (188)
- Allosteric effects of the oncogenic RasQ61L mutant on Raf-RBD. (2015) (175)
- Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics (2016) (172)
- Molecular dynamics simulations of alanine rich β‐sheet oligomers: Insight into amyloid formation (2002) (168)
- Molecular-level examination of Cu2+ binding structure for amyloid fibrils of 40-residue Alzheimer's β by solid-state NMR spectroscopy. (2011) (166)
- Modeling the Alzheimer Abeta17-42 fibril architecture: tight intermolecular sheet-sheet association and intramolecular hydrated cavities. (2007) (165)
- The underappreciated role of allostery in the cellular network. (2013) (154)
- Electrostatic strengths of salt bridges in thermophilic and mesophilic glutamate dehydrogenase monomers (2000) (143)
- Mechanisms of transcription factor selectivity. (2010) (136)
- Protein-protein interaction networks: how can a hub protein bind so many different partners? (2009) (128)
- Structural stability and dynamics of an amyloid-forming peptide GNNQQNY from the yeast prion sup-35. (2006) (123)
- Protein functional epitopes: hot spots, dynamics and combinatorial libraries. (2001) (111)
- Molecular dynamics simulations of a beta-hairpin fragment of protein G: balance between side-chain and backbone forces. (2000) (110)
- Short peptide amyloid organization: stabilities and conformations of the islet amyloid peptide NFGAIL. (2003) (109)
- Importance of selecting proper basis set in quantum mechanical studies of potential energy surfaces of carbohydrates (1999) (105)
- Protein–protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach (2005) (98)
- Release of Cytochrome C from Bax Pores at the Mitochondrial Membrane (2017) (96)
- Multiple conformational selection and induced fit events take place in allosteric propagation. (2014) (96)
- Models of toxic beta-sheet channels of protegrin-1 suggest a common subunit organization motif shared with toxic alzheimer beta-amyloid ion channels. (2008) (95)
- Trp/Met/Phe hot spots in protein-protein interactions: potential targets in drug design. (2007) (90)
- Metal binding sites in amyloid oligomers: Complexes and mechanisms (2012) (88)
- Systematic Comparison of Experimental, Quantum Mechanical, and Molecular Mechanical Bond Lengths for Organic Molecules (1996) (88)
- Synergistic Interactions between Repeats in Tau Protein and Aβ Amyloids May Be Responsible for Accelerated Aggregation via Polymorphic States (2011) (87)
- Hollow core of Alzheimer’s Aβ42 amyloid observed by cryoEM is relevant at physiological pH (2010) (85)
- Polymorphism of Alzheimer's Abeta17-42 (p3) oligomers: the importance of the turn location and its conformation. (2009) (84)
- Annular structures as intermediates in fibril formation of Alzheimer Abeta17-42. (2008) (74)
- Selective molecular recognition in amyloid growth and transmission and cross-species barriers. (2012) (74)
- Structural Insight into Tau Protein’s Paradox of Intrinsically Disordered Behavior, Self-Acetylation Activity, and Aggregation (2014) (73)
- Contribution of Salt Bridges Toward Protein Thermostability (2000) (71)
- Stabilities and conformations of Alzheimer's beta -amyloid peptide oligomers (Abeta 16-22, Abeta 16-35, and Abeta 10-35): Sequence effects. (2002) (71)
- Theoretical Studies of the Potential Energy Surfaces and Compositions of the d-Aldo- and d-Ketohexoses (1998) (70)
- Nuclease activity gives an edge to host‐defense peptide piscidin 3 over piscidin 1, rendering it more effective against persisters and biofilms (2017) (66)
- A comparative study of amyloid fibril formation by residues 15-19 of the human calcitonin hormone: a single beta-sheet model with a small hydrophobic core. (2005) (66)
- Interaction of protegrin-1 with lipid bilayers: membrane thinning effect. (2006) (65)
- How similar are protein folding and protein binding nuclei? Examination of vibrational motions of energy hot spots and conserved residues. (2005) (64)
- Folding funnels and conformational transitions via hinge-bending motions (2007) (64)
- Transition-state ensemble in enzyme catalysis: possibility, reality, or necessity? (2000) (63)
- Molecular polarizabilities and induced dipole moments in molecular mechanics (2000) (61)
- The unique Alzheimer's β-amyloid triangular fibril has a cavity along the fibril axis under physiological conditions. (2011) (60)
- Principles of Protein—Protein Interactions: What Are the Preferred Ways for Proteins to Interact? (2008) (59)
- Protein dynamics and conformational selection in bidirectional signal transduction (2012) (59)
- Sequence analysis of p53 response-elements suggests multiple binding modes of the p53 tetramer to DNA targets (2007) (57)
- Amylin-Aβ oligomers at atomic resolution using molecular dynamics simulations: a link between Type 2 diabetes and Alzheimer's disease. (2016) (57)
- Conformational Basis for Asymmetric Seeding Barrier in Filaments of Three- and Four-Repeat Tau (2012) (57)
- Cross-seeding and Conformational Selection between Three- and Four-repeat Human Tau Proteins* (2012) (56)
- Conformational distribution and α-helix to β-sheet transition of human amylin fragment dimer. (2014) (56)
- Protein Folding: Binding of Conformationally Fluctuating Building Blocks Via Population Selection (2001) (55)
- The stability of monomeric intermediates controls amyloid formation: Abeta25-35 and its N27Q mutant. (2006) (54)
- Consensus features in amyloid fibrils: sheet–sheet recognition via a (polar or nonpolar) zipper structure (2006) (53)
- Allosteric conformational barcodes direct signaling in the cell. (2013) (52)
- In silico protein design by combinatorial assembly of protein building blocks (2004) (51)
- Conformational study of the protegrin-1 (PG-1) dimer interaction with lipid bilayers and its effect (2007) (49)
- Mapping the Conformation Space of Wildtype and Mutant H-Ras with a Memetic, Cellular, and Multiscale Evolutionary Algorithm (2015) (47)
- Binding and folding: in search of intramolecular chaperone-like building block fragments. (2000) (46)
- Spectroscopic constants and potential energy surfaces for the possible interstellar molecules A1NC and A1CN (1995) (46)
- The stability and dynamics of the human calcitonin amyloid peptide DFNKF. (2004) (45)
- Ligand Binding and Circular Permutation Modify Residue Interaction Network in DHFR (2007) (44)
- How do transcription factors select specific binding sites in the genome? (2009) (43)
- Triggering loops and enzyme function: identification of loops that trigger and modulate movements. (2003) (43)
- A broad view of scaffolding suggests that scaffolding proteins can actively control regulation and signaling of multienzyme complexes through allostery. (2013) (41)
- Single mutations in tau modulate the populations of fibril conformers through seed selection. (2014) (41)
- Peptide–MHC (pMHC) binding to a human antiviral T cell receptor induces long-range allosteric communication between pMHC- and CD3-binding sites (2018) (40)
- Polymorphic C-terminal β-Sheet Interactions Determine the Formation of Fibril or Amyloid β-derived Diffusible Ligand-like Globulomer for the Alzheimer Aβ42 Dodecamer* (2010) (40)
- Antigen binding allosterically promotes Fc receptor recognition (2018) (39)
- Druggable orthosteric and allosteric hot spots to target protein-protein interactions. (2014) (38)
- Mechanisms of recognition of amyloid-β (Aβ) monomer, oligomer, and fibril by homologous antibodies (2017) (38)
- Amplification of signaling via cellular allosteric relay and protein disorder (2009) (36)
- Polymorphic Triple β-Sheet Structures Contribute to Amide Hydrogen/Deuterium (H/D) Exchange Protection in the Alzheimer Amyloid β42 Peptide* (2011) (35)
- Local and global anatomy of antibody‐protein antigen recognition (2018) (35)
- Thermal unfolding molecular dynamics simulation of Escherichia coli dihydrofolate reductase: Thermal stability of protein domains and unfolding pathway (2002) (35)
- From structure to function: methods and applications. (2005) (35)
- Structured Crowding and Its Effects on Enzyme Catalysis (2013) (34)
- Aβ “Stretching-and-Packing” Cross-Seeding Mechanism Can Trigger Tau Protein Aggregation (2015) (33)
- Probing potential binding modes of the p53 tetramer to DNA based on the symmetries encoded in p53 response elements (2007) (33)
- Dimerization of the SP1 Region of HIV-1 Gag Induces a Helical Conformation and Association into Helical Bundles: Implications for Particle Assembly (2015) (33)
- Molecular insights into the reversible formation of tau protein fibrils. (2013) (31)
- Comparison of the protein-protein interfaces in the p53-DNA crystal structures: towards elucidation of the biological interface. (2005) (31)
- Protein dynamics: Conformational footprints. (2016) (30)
- Polymorphism in Self-Assembly of Peptide-Based β-Hairpin Contributes to Network Morphology and Hydrogel Mechanical Rigidity (2014) (30)
- Binding interactions between the core central domain of 16S rRNA and the ribosomal protein S15 determined by molecular dynamics simulations. (2003) (30)
- Molecular dynamics simulations of Alzheimer Abeta40 elongation and lateral association. (2008) (30)
- Structural disorder in four-repeat Tau fibrils reveals a new mechanism for barriers to cross-seeding of Tau isoforms (2018) (29)
- Diameters of single-walled carbon nanotubes (SWCNTs) and related nanochemistry and nanobiology (2010) (29)
- Replica Exchange Molecular Dynamics: A Practical Application Protocol with Solutions to Common Problems and a Peptide Aggregation and Self-Assembly Example. (2018) (29)
- Molecular dynamics simulations of the unfolding of β2‐microglobulin and its variants (2003) (29)
- Critical Nucleus Structure and Aggregation Mechanism of the C-terminal Fragment of Copper-Zinc Superoxide Dismutase Protein. (2016) (28)
- Toward the observation of silanone (H2SiO) and hydroxysilylene (HSiOH) via microwave spectroscopy (1994) (28)
- Characterization of the Conformational State and Flexibility of HIV-1 Glycoprotein gp120 Core Domain* (2004) (28)
- Promiscuous and specific recognition among ephrins and Eph receptors. (2014) (28)
- Why Does Binding of Proteins to DNA or Proteins to Proteins Not Necessarily Spell Function? (2010) (27)
- Release Factors eRF1 and RF2 (2004) (27)
- CD4 binding partially locks the bridging sheet in gp120 but leaves the beta2/3 strands flexible. (2005) (26)
- IKKα inactivation promotes Kras-initiated lung adenocarcinoma development through disrupting major redox regulatory pathways (2018) (26)
- Disruption of the Rbm38-eIF4E Complex with a Synthetic Peptide Pep8 Increases p53 Expression. (2019) (26)
- A systematic study of the vibrational free energies of polypeptides in folded and random states. (2000) (26)
- Prediction of Host-Pathogen Interactions for Helicobacter pylori by Interface Mimicry and Implications to Gastric Cancer. (2017) (25)
- Energy landscape and dynamics of the β‐hairpin G peptide and its isomers: Topology and sequences (2003) (25)
- Comparison of the human and worm p53 structures suggests a way for enhancing stability. (2006) (25)
- Coupling of the non-amyloid-component (NAC) domain and the KTK(E/Q)GV repeats stabilize the α-synuclein fibrils. (2016) (24)
- Familial Mutations May Switch Conformational Preferences in α-Synuclein Fibrils. (2017) (24)
- In the quest for stable rescuing mutants of p53: computational mutagenesis of flexible loop L1. (2005) (24)
- Structure, Strain Energy, and Magnetic Susceptibility of [4]Paracyclophane and the Activation Energy for Its Interconversion with 1,4-Tetramethylene Dewar Benzene (1995) (24)
- Structural and Functional Consequences of Phosphate–Arsenate Substitutions in Selected Nucleotides: DNA, RNA, and ATP (2012) (24)
- Interdependence of backbone flexibility, residue conservation, and enzyme function: a case study on beta1,4-galactosyltransferase-I. (2003) (24)
- A MOLECULAR MECHANICS STUDY OF THE CHOLESTERYL ACETATE CRYSTAL : EVALUATION OF INTERCONVERSION AMONG RG, RZ, AND RA BOND LENGTHS (1997) (24)
- Atomistic-level study of the interactions between hIAPP protofibrils and membranes: Influence of pH and lipid composition. (2018) (23)
- Insights Into the Allosteric Inhibition of the SUMO E2 Enzyme Ubc9. (2016) (23)
- Molecular dynamics simulation of Escherichia coli dihydrofolate reductase and its protein fragments: Relative stabilities in experiment and simulations (2001) (23)
- Binding of protofibrillar Aβ trimers to lipid bilayer surface enhances Aβ structural stability and causes membrane thinning. (2017) (22)
- Molecular Dynamics Simulations of the Denaturation and Refolding of an RNA Tetraloop (2001) (22)
- .pi. Electron Delocalization and Compression in Acyclic Acetylenic Precursors to Multidimensional Carbon Networks: Comparison with Experiment for the Recently Synthesized Tris(trimethylsilyl)-Substituted Tetraethynylmethane. Structures, Thermochemistry, Infrared Spectra, Polarizabilities, and Hyperp (1994) (22)
- SINGLET METHYLCARBENE : EQUILIBRIUM GEOMETRY OR TRANSITION STATE ? (1994) (22)
- Defining the Domain Arrangement of the Mammalian Target of Rapamycin Complex Component Rictor Protein (2015) (21)
- Allosteric stabilization of the amyloid-β peptide hairpin by the fluctuating N-terminal. (2016) (21)
- In Silico Methods in Antibody Design (2018) (21)
- Side chain interactions determine the amyloid organization: a single layer β-sheet molecular structure of the calcitonin peptide segment 15–19 (2004) (21)
- PYROPHOSPHATE STRUCTURES AND REACTIONS : EVALUATION OF ELECTROSTATIC EFFECTS ON THE PYROPHOSPHATES WITH AND WITHOUT ALKALI CATIONS (1994) (20)
- Self-aggregation and coaggregation of the p53 core fragment with its aggregation gatekeeper variant. (2016) (20)
- How Does Hyperphopsphorylation Promote Tau Aggregation and Modulate Filament Structure and Stability? (2016) (20)
- Spectroscopic constants and potential energy surfaces for silanone (H2SiO), hydroxysilylene (HSiOH), the hydroxysilylene dimer, and the disilynyl radical (Si2H) (1996) (20)
- Molecular mechanics calculations (MM3) on nitriles and alkynes (1996) (20)
- Conformational selection in amyloid-based immunotherapy: Survey of crystal structures of antibody-amyloid complexes. (2016) (20)
- Insights into amyloid structural formation and assembly through computational approaches (2004) (20)
- Quantum Mechanical and Molecular Mechanics (MM3) Studies of Hydrazines (1996) (19)
- Towards drugs targeting multiple proteins in a systems biology approach. (2007) (19)
- SINGLET-TRIPLET ENERGY SEPARATION AND BARRIER FOR RING CLOSURE FOR TRIMETHYLENEMETHANE AND ITS COMPLEXES (1996) (19)
- "Similarity trap" in protein-protein interactions could be carcinogenic: simulations of p53 core domain complexed with 53BP1 and BRCA1 BRCT domains. (2006) (19)
- Fragmentation surface of triplet ketene (1998) (19)
- Conformational stability and dynamics of the cancer‐associated isoform Δ133p53β are modulated by p53 peptides and p53‐specific DNA (2018) (19)
- THEORETICAL INVESTIGATION OF THE CA+-N2 AND CA2+-N2 COMPLEXES (1998) (19)
- Coupling of Zinc-Binding and Secondary Structure in Nonfibrillar Aβ40 Peptide Oligomerization (2015) (18)
- Aquated metaphosphate (PO3-.cntdot.(H2O)n) clusters. Molecular anion structures, energetics, and vibrational frequencies (1993) (18)
- Interface-Based Structural Prediction of Novel Host-Pathogen Interactions. (2018) (17)
- Isomerization of PO3-.(H2O)n clusters to H2PO4-.(H2O)n-1: transition states and barrier heights (1993) (17)
- Regulating highly dynamic unstructured proteins and their coding mRNAs (2009) (17)
- The growth mechanism of single-walled carbon nanotubes with a controlled diameter (2012) (17)
- Conformational dynamics of cancer-associated MyD88-TIR domain mutant L252P (L265P) allosterically tilts the landscape toward homo-dimerization. (2016) (16)
- Protein charge and mass contribute to the spatio‐temporal dynamics of protein–protein interactions in a minimal proteome (2013) (16)
- Periodic Trends for Transition Metal Dihydrides MH2, Dihydride Dihydrogen Complexes MH2·H2, and Tetrahydrides MH4 (M = Ti, V, and Cr) (1996) (16)
- Mutational Analysis and Allosteric Effects in the HIV-1 Capsid Protein Carboxyl-Terminal Dimerization Domain (2009) (15)
- Multiple‐Targeting and Conformational Selection in the Estrogen Receptor: Computation and Experiment (2011) (15)
- Carbon monoxide in controlling the surface formation of Group VIII metal nanoparticles. (2014) (14)
- The distinct structural preferences of tau protein repeat domains. (2018) (14)
- THE QUEST FOR A METAPHOSPHATE INTERMEDIATE. THE MECHANISMS FOR HYDROLYSIS OF PYROPHOSPHATES WITH AND WITHOUT CATALYSIS (1995) (14)
- A hierarchical, building-block-based computational scheme for protein structure prediction (2001) (14)
- R102Q mutation shifts the salt-bridge network and reduces the structural flexibility of human neuronal calcium sensor-1 protein. (2014) (12)
- Dynamics differentiate between active and inactive inteins. (2015) (12)
- The contribution of the Trp/Met/Phe residues to physical interactions of p53 with cellular proteins (2005) (12)
- Tetraethynylethylene, a molecule with four very short CC single bonds. Interpretation of the infrared spectrum (1992) (11)
- Calculation of rz structures from rs structures (1997) (11)
- Oncogenic Mutations Differentially Affect Bax Monomer, Dimer, and Oligomeric Pore Formation in the Membrane (2016) (11)
- Cooperativity among Short Amyloid Stretches in Long Amyloidogenic Sequences (2012) (11)
- Explicit and implicit water simulations of a β‐hairpin peptide (1999) (11)
- Intra-molecular chaperone: the role of the N-terminal in conformational selection and kinetic control (2009) (10)
- Protein–Ligand Interactions: Induced Fit (2001) (10)
- Peptide-MHC Binding Reveals Conserved Allosteric Sites in MHC Class I- and Class II-Restricted T Cell Receptors (TCRs). (2020) (9)
- Investigation of the interactions between the EphB2 receptor and SNEW peptide variants (2014) (9)
- Dipeptide analysis of p53 mutations and evolution of p53 family proteins. (2014) (9)
- Properties of sulfonated EPDM lonomers obtained by sulfonation in the presence of phase-transfer catalyst (1989) (8)
- Intermolecular disulfide bonds between unpaired cysteines retard the C-terminal trans-cleavage of Npu DnaE. (2018) (8)
- Molecular Recognition between Aβ-Specific Single-Domain Antibody and Aβ Misfolded Aggregates (2018) (8)
- OBSERVED AND CALCULATED RAMAN SPECTRA OF THE GA2H6 AND GA2D6 MOLECULES (1994) (8)
- Molecular dynamics simulations of the unfolding of beta(2)-microglobulin and its variants. (2003) (7)
- Trastuzumab Blocks the Receiver Function of HER2 Leading to the Population Shifts of HER2-Containing Homodimers and Heterodimers (2021) (7)
- Structure and energetic basis of overrepresented λ light chain in systemic light chain amyloidosis patients. (2017) (7)
- Crystal Structure of a Plectonemic RNA Supercoil (2012) (6)
- Allosteric control of antibody-prion recognition through oxidation of a disulfide bond between the CH and CL chains (2017) (6)
- From computational quantum chemistry to computational biology: experiments and computations are (full) partners (2004) (6)
- Experimental and Computational Protocols for Studies of Cross-Seeding Amyloid Assemblies. (2018) (5)
- Effects of the C-Terminal Tail on the Conformational Dynamics of Human Neuronal Calcium Sensor-1 Protein. (2015) (5)
- Network effect of Wt-mutant p53 interactions and implications on p53 gene therapy. (2014) (4)
- Computational Investigation of Gantenerumab and Crenezumab's Recognition of Aβ Fibrils in Alzheimer's Disease Brain Tissue. (2020) (4)
- Alzheimer Aβ amyloid tubular fibrils: Insight into polymorphism (2011) (4)
- Bioinformatics Study of Cancer-Related Mutations within p53 Phosphorylation Site Motifs (2014) (4)
- Probing Oligomerized Conformations of Defensin in the Membrane. (2017) (4)
- Dancing with Strings: The Conformational Dynamics of VQIXXK Motifs within Tau Protein in Monomer, Fibril and Hyper-Phosphorylated Filament States (2016) (3)
- Homology modeling and molecular dynamics simulations of lymphotactin (2000) (3)
- Temperature-Dependent Conformational Properties of Human Neuronal Calcium Sensor-1 Protein Revealed by All-Atom Simulations. (2016) (3)
- IKKα-deficient lung adenocarcinomas generate an immunosuppressive microenvironment by overproducing Treg-inducing cytokines (2022) (3)
- Survivin Expression Is Differentially Regulated by a Selective Cross-talk between RBM38 and miRNAs let-7b or miR-203a (2021) (3)
- The Allosteric Effect in Antibody-Antigen Recognition. (2020) (2)
- Simulation of the Distribution of Disordered Tau Proteins Around Its Amyloid Fibrils Core (2015) (2)
- Conformational Ensemble of TteAdoCbl Riboswitch Provides Stable Structural Elements for Conformation Selection and Population Shift in Cobalamin Recognition. (2021) (2)
- Conservation of polar residues at protein interfaces. (2000) (2)
- Human Neuronal Calcium Sensor-1 Protein Avoids Histidine Residues To Decrease pH Sensitivity. (2017) (2)
- Structural and Functional Consequences of Phosphate-Arsenate Substitutions in Selected Nucleotides: DNA, RNA, and ATP (2012) (2)
- Antigen Induced Dynamic Conformation Changes of Antibody to Facilitate Recognition of Fc Receptors (2018) (2)
- Editorial (Thematic Issue: Protein-protein interaction: from interface to interaction network) (2014) (2)
- The synchronous thermal decomposition mechanism of azoisopropane (1995) (2)
- Protein dynamics and conformational selection in bidirectional signal transduction (2012) (1)
- Compilation and Analysis of Enzymes, Engineered Antibodies, and Nanoparticles Designed to Interfere with Amyloid‐β Aggregation (2017) (1)
- Fewer Dimensions, More Structures for Improved Discrete Models of Dynamics of Free versus Antigen-Bound Antibody (2022) (1)
- Antigen Binding Reshapes Antibody Energy Landscape and Conformation Dynamics (2021) (1)
- Isomerization of PO- 3×(H2O)n Clusters to H2PO- 4×(H2O)n-1: Transition States and Barrier Heights (1994) (1)
- Computational Approaches and Tools for Establishing Structural Models for Short Amyloid‐forming Peptides (2008) (1)
- Probing the role of allostery in Rho and Ras GTPases (2017) (1)
- Abstract 2310: Molecular dynamics simulation of permeation pathway of cytochrome C through Bax pore (2017) (1)
- The Quest for a Metaphosphate Intermediate. The Mechanisms for Hydrolysis of Pyrophosphates with and without Catalysis. (1995) (1)
- Computational Construction of a Single-Chain Bi-Paratopic Antibody Allosterically Inhibiting TCR-Staphylococcal Enterotoxin B Binding (2021) (1)
- Crystal structure of Ubc9 (K48/K49A/E54A) complexed with Fragment 2 (mercaptobenzoxazole from cocktail screen) (2016) (0)
- Allosteric Effects and Signal Transduction in the Peptide-MHC Binding to a Human T Cell Receptor (2019) (0)
- PO‐ 3×(H2O)n Clusters. Molecular Anion Structures, Energetics, and Vibrational Frequencies. (1993) (0)
- The (still) underappreciated role of allostery in the cellular network (2019) (0)
- Effect of the impurity Li(x)Ni(1-x)O on the electrochemical properties of 5 V cathode material LiNi(0.5)Mn(1.5)O(4) (2011) (0)
- Crystal structure of Ubc9 (K48A/K49A/E54A) complexed with Fragment 6 (2016) (0)
- Crystal structure of Ubc9 (K48/K49A/E54A) complexed with Fragment 1 (biphenol from fragment cocktail screen) (2016) (0)
- Release of Cytochrome C from Bax Pores at the Mitochondrial Membrane (2017) (0)
- Exploring the Aggregation Mechanism of Intrinsically Disordered Tau Protein (2017) (0)
- Crystal structure of Ubc9 (K48/K49A/E54A) complexed with Fragment 2 (mercaptobenzoxazole) (2016) (0)
- Crystal Structure of human Ubc9 (K48A/K49A/E54A) (2016) (0)
- Crystal Structure of Ubc9 (K48A/K49A/E54A) complexed with Fragment 8 (JSS190B146) (2016) (0)
- Probing the Stability of Fibril and Tubular Species Using All-Atom Molecular Dynamics Simulations in Solution: Insight into Polymorphism (2013) (0)
- Construct and Simulate Virtual Cell with Minimum Genome at the Nanoscale (2011) (0)
- Correlation of N-glycan dynamics and interaction network with allosteric antigen binding and Fc receptor recognition (2021) (0)
- The Evolution of the Natively Disordered Region in P53 Family Proteins (2011) (0)
- The origin of Allosteric Modulation: Multiple Pre-existing Pathways Selection (2009) (0)
- Development of ultra-high affinity bivalent ligands targeting the polo-like kinase 1 (2022) (0)
- SiteEngine: Functional Sites Structural Search Engine (2007) (0)
- Cooperativities Among Short Amyloid Stretches Within Long Amyloidogenic Sequence Segment (2012) (0)
- Polymorphism in Alzheimer Aβ Amyloid Organization: Insight into Aβ Aggregation (2010) (0)
- 42-Residue Beta Amyloid Fibril (2015) (0)
- Computational Studies of Phosphate Derivatives (2010) (0)
- Correction to Familial Mutations May Switch Conformational Preferences in α-Synuclein Fibrils. (2018) (0)
- Polymophism of A-Beta1-42 Peptide Oligomer - Membrane Interactions (2010) (0)
- A Supramolecular Assembly Strategy for Hydrophilic Drug Delivery towards Synergistic Cancer Treatment. (2023) (0)
- Prediction of Novel Host-Pathogen Interactions for Helicobacter Pylori Through Interface Mimicry and their Implications to Gastric Cancer (2019) (0)
- BioChem: A New International and Interdisciplinary Journal (2021) (0)
- Ras Isoforms Conformational Clustering and Community Networks Studies: Simulating Ras with Accelerated Molecular Dynamics (2015) (0)
- Computational Study of Cytolytic Peptides: Monomeric-Oligomeric Structures and Ligand Interactions (2005) (0)
- From Monomers, Dimers to Oligomers: How Metal Ions Regulate Amyloid Beta Porteins in Amyloid Formation? (2015) (0)
- I-107 Long-range allosteric effects induced by Tax–HLA-A2 binding to an anti-HTLV-1 TCR: Implications for early T cell signaling (2019) (0)
- Molecular dynamics based improvement of the solubilizing self-cleavable tag Zbasic-ΔI-CM application in the preparation of recombinant proteins in Escherichia coli. (2019) (0)
- Visualizing RNA conformational and architectural heterogeneity in solution (2023) (0)
- Crystal structure of Ubc9 (K48/K49A/E54A) complexed with Fragment 1 (biphenol) (2016) (0)
- Long-range effects induced by peptide-MHC binding to a human T cell receptor: Implications for the initiation of T cell signaling (2018) (0)
- Exact Identification of Topologically Essential Interactions in the Networks Derived from Perturbation Experiments (2011) (0)
- Interactions: Induced Fit (2001) (0)
- Effects of R102Q Mutation on the Structural and Dynamic Properties of Human Neuronal Calcium Sensor-1 Protein (2015) (0)
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What Schools Are Affiliated With Buyong Ma?
Buyong Ma is affiliated with the following schools:
