Chuan Yi Tang
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Computer Science
Why Is Chuan Yi Tang Influential?
(Suggest an Edit or Addition)Chuan Yi Tang's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- A 2.|E|-Bit Distributed Algorithm for the Directed Euler Trail Problem (1993) (13962)
- A polynomial time approximation scheme for minimum routing cost spanning trees (1998) (163)
- A Novel Molecular Signature Identified by Systems Genetics Approach Predicts Prognosis in Oral Squamous Cell Carcinoma (2011) (153)
- Whole-genome sequencing and identification of Morganella morganii KT pathogenicity-related genes (2012) (99)
- An Efficient Algorithm for Finding a Maximum Weight 2-Independent Set on Interval Graphs (1992) (96)
- Feature Selection and Combination Criteria for Improving Accuracy in Protein Structure Prediction (2007) (83)
- The sensor kinase BfmS mediates virulence in Acinetobacter baumannii. (2014) (76)
- Perfect edge domination and efficient edge domination in graphs (2002) (61)
- An Efficient Algorithm for Sorting by Block-Interchanges and Its Application to the Evolution of Vibrio Species (2005) (61)
- Constrained multiple sequence alignment tool development and its application to RNase family alignment (2002) (57)
- The full Steiner tree problem (2003) (55)
- Solving the Weighted Efficient Edge Domination Problem on Bipartite Permutation Graphs (1998) (53)
- Approximation algorithms for some optimum communication spanning tree problems (1998) (53)
- Composition Analysis and Feature Selection of the Oral Microbiota Associated with Periodontal Disease (2018) (49)
- Mixed Sequence Reader: A Program for Analyzing DNA Sequences with Heterozygous Base Calling (2012) (48)
- A Linear-Time Algorithm for the Weighted Feedback Vertex Problem on Interval Graphs (1997) (45)
- Approximation algorithms for the shortest total path length spanning tree problem (2000) (41)
- Sequence of Leptospira santarosai serovar Shermani genome and prediction of virulence-associated genes. (2012) (40)
- A New Measure of Edit Distance between Labeled Trees (2001) (38)
- Weighted efficient domination problem on some perfect graphs (2002) (37)
- Approximation and Exact Algorithms for Constructing Minimum Ultrametric Trees from Distance Matrices (1998) (34)
- Identification of essential residues of human alpha-L-fucosidase and tests of its mechanism. (2009) (33)
- Light graphs with small routing cost (2002) (31)
- RNASEQR—a streamlined and accurate RNA-seq sequence analysis program (2011) (31)
- The chromatin modification by SUMO-2/3 but not SUMO-1 prevents the epigenetic activation of key immune-related genes during Kaposi’s sarcoma associated herpesvirus reactivation (2013) (30)
- Computational modeling with forward and reverse engineering links signaling network and genomic regulatory responses: NF-κB signaling-induced gene expression responses in inflammation (2010) (29)
- A Polynomial Time Approximation Scheme for Optimal Product-Requirement Communication Spanning Trees (2000) (28)
- SPRING: a tool for the analysis of genome rearrangement using reversals and block-interchanges (2006) (27)
- Effincient Domination of Permutation Graphs and Trapezoid Graphs (1997) (27)
- On the Full and Bottleneck Full Steiner Tree Problems (2003) (27)
- Optical Detection of Human Papillomavirus Type 16 and Type 18 by Sequence Sandwich Hybridization With Oligonucleotide-Functionalized Au Nanoparticles (2009) (25)
- An improved algorithm for the maximum agreement subtree problem (2004) (25)
- Graph Searching on Some Subclasses of Chordal Graphs (2000) (25)
- Solving the Euclidean Bottleneck Biconnected Edge Subgraph Problem by 2-Relative Neighborhood Graphs (1992) (25)
- Constrained Multiple Sequence Alignment Tool Development Andits Application to Rnase Family Alignment (2003) (24)
- Transcriptome profiling in imipenem-selected Acinetobacter baumannii (2014) (24)
- Edge and node searching problems on trees (1997) (24)
- The origin of Acinetobacter baumannii TYTH-1: a comparative genomics study. (2013) (23)
- RE-MuSiC: a tool for multiple sequence alignment with regular expression constraints (2007) (23)
- Solving the Euclidean bottleneck matching problem byk-relative neighborhood graphs (1992) (23)
- On the Diversity-Performance Relationship for Majority Voting in Classifier Ensembles (2007) (21)
- Prevalence and mapping of a plasmid encoding a type IV secretion system in Acinetobacter baumannii. (2014) (21)
- Bacterial diversity among four healthcare-associated institutes in Taiwan (2017) (21)
- An Efficient Algorithm for the Length-Constrained Heaviest Path Problem on a Tree (1999) (21)
- 20-relative Neighborhood Graphs Are Hamiltonian (1990) (20)
- Development of Novel 3D-QSAR Combination Approach for Screening and Optimizing B-Raf Inhibitors in silico (2011) (20)
- A comparative study of class 1 integrons in Acinetobacter baumannii. (2014) (20)
- SoRT2: a tool for sorting genomes and reconstructing phylogenetic trees by reversals, generalized transpositions and translocations (2010) (20)
- Genome Sequence of Acinetobacter baumannii TYTH-1 (2012) (18)
- A genetic algorithm-based boolean delay model of intracellular signal transduction in inflammation (2011) (18)
- An efficient external sorting algorithm (2000) (18)
- Embedding meshes and TORUS networks onto degree-four chordal rings (1998) (18)
- MGUPGMA: A Fast UPGMA Algorithm With Multiple Graphics Processing Units Using NCCL (2017) (17)
- An efficient RNA interference screening strategy for gene functional analysis (2012) (16)
- GI-POP: a combinational annotation and genomic island prediction pipeline for ongoing microbial genome projects. (2013) (16)
- GeneAlign: a coding exon prediction tool based on phylogenetical comparisons (2006) (16)
- Application of 16S rRNA metagenomics to analyze bacterial communities at a respiratory care centre in Taiwan (2015) (15)
- Whole-Exome Sequencing to Identify a Novel LMNA Gene Mutation Associated with Inherited Cardiac Conduction Disease (2013) (15)
- Efficient algorithms for regular expression constrained sequence alignment (2006) (15)
- Identification of degenerate motifs using position restricted selection and hybrid ranking combination (2006) (15)
- An Optimal Algorithm for Constructing Oriented Voronoi Diagrams and Geographic Neighborhood Graphs (1990) (15)
- A parallel and incremental algorithm for efficient unique signature discovery on DNA databases (2010) (14)
- On the complexity of some multi-attribute file design problems (1985) (14)
- A fast algorithm for the alpha-connected two-center decision problem (2003) (13)
- A reinforced merging methodology for mapping unique peptide motifs in members of protein families (2006) (13)
- ROBIN: a tool for genome rearrangement of block-interchanges (2005) (13)
- Reconstruction of phyletic trees by global alignment of multiple metabolic networks (2013) (13)
- Synchronizable protocol test generation via the duplex technique (1990) (13)
- Feature selection and combination criteria for improving predictive accuracy in protein structure classification (2005) (13)
- A novel method to identify cooperative functional modules: study of module coordination in the Saccharomyces cerevisiae cell cycle (2011) (13)
- An improved algorithm for sorting by block-interchanges based on permutation groups (2010) (12)
- Detection and Alignment of 3D Domain Swapping Proteins Using Angle-Distance Image-Based Secondary Structural Matching Techniques (2010) (12)
- Graph Searching on Chordal Graphs (1996) (12)
- Pharmacophore modeling and virtual screening to identify potential RET kinase inhibitors. (2011) (11)
- Feature-incorporated alignment based ligand-binding residue prediction for carbohydrate-binding modules (2010) (11)
- Disjoint Segments with Maximum Density (2005) (10)
- Phylogenomic and Domain Analysis of Iterative Polyketide Synthases in Aspergillus Species (2012) (10)
- Solving the Single Step Graph Searching Problem by Solving the Maximum Two-Independent Set Problem (1991) (9)
- An improved algorithm for finding a length-constrained maximum-density subtree in a tree (2008) (9)
- A Linear-Time Algorithm for Constructing an Optimal Node-Search Strategy of a Tree (1998) (9)
- Efficient Minus and Signed Domination in Graphs (2000) (9)
- Embedding cycles and meshes onto incomplete hypercubes (2000) (9)
- Synchronizable test sequence for multi-party protocol conformance testing (1998) (9)
- Efficient and Interpretable Prediction of Protein Functional Classes by Correspondence Analysis and Compact Set Relations (2013) (8)
- Introducing Variable Gap Penalties into Three-Sequence Alignment for Protein Sequences (2008) (7)
- Isolation and Identification of Post-Transcriptional Gene Silencing-Related Micro-RNAs by Functionalized Silicon Nanowire Field-effect Transistor (2015) (7)
- Insertion sequence transposition determines imipenem resistance in Acinetobacter baumannii. (2014) (7)
- Minimum-cost synchronizable test sequence generation via the duplexU digraph (1993) (7)
- Power Domination on Block-cactus Graphs ∗ (2007) (7)
- Metabolic classification of microbial genomes using functional probes (2012) (7)
- Optimal speeding up of parallel algorithms based upon the divide-and-conquer strategy (1984) (7)
- Hydrophilic Aromatic Residue and in silico Structure for Carbohydrate Binding Module (2011) (7)
- The Full Steiner Tree Problem in Phylogeny (2002) (7)
- Methods of Improving Protein Structure Prediction Based on HLA Neural Network and Combinatorial Fusion Analysis (2005) (7)
- Parallel Shellsort Algorithm for Many-Core GPUs with CUDA (2012) (7)
- Identification of Essential Residues of Human RL-Fucosidase and Tests of Its Mechanism † (2008) (6)
- Covering convex rectilinear polygons in linear time (1991) (6)
- Prevalence and comparative analysis of the type IV secretion system in Aggregatibacter actinomycetemcomitan. (2017) (6)
- Comparative exon prediction based on heuristic coding region alignment (2005) (6)
- Transcriptional regulation of human eosinophil RNases by an evolutionary- conserved sequence motif in primate genome (2007) (6)
- Efficient Parallel Algorithm for Optimal Three-Sequences Alignment (2007) (6)
- An average case analysis of a greedy algorithm for the on-line Steiner tree problem (1996) (5)
- A Near-Quadratic Algorithm for the Alpha-Connected Two-Center Problem (2006) (5)
- Efficient parallel branch-and-bound algorithm for constructing minimum ultrametric trees (2009) (5)
- Improving the UIOv-method for protocol conformance testing (1995) (5)
- Computing the Optimal IO Sequences of a Protocol in Polynomial Time (1991) (5)
- Average Performance of a Greedy Algorithm for the On-Line Minimum Matching Problem on Euclidean Space (1994) (5)
- An IDC-based algorithm for efficient homology filtration with guaranteed seriate coverage (2004) (5)
- The Competitiveness of Randomized Algorithms for On-Line Steiner Tree and On-Line Spanning Tree Problems (1993) (5)
- Development of a Human Dihydroorotate Dehydrogenase (hDHODH) Pharma-Similarity Index Approach with Scaffold-Hopping Strategy for the Design of Novel Potential Inhibitors (2014) (5)
- Association between Statin Use and Sepsis Risk in Patients with Dementia: A Retrospective Cohort Study (2019) (4)
- Novel Computational Technologies for Next-Generation Sequencing Data Analysis and Their Applications (2015) (4)
- Methods for memory test time reduction (1996) (4)
- Profiling dependence vectors for loop parallelization (1996) (4)
- Guarding in a simple polygon (2000) (4)
- Design of Novel FLT-3 Inhibitors Based on Dual-Layer 3D-QSAR Model and Fragment-Based Compounds in Silico (2012) (4)
- Cloud computing service framework for bioinformatics tools (2015) (4)
- Extracting Alternative Splicing Information from Captions and Abstracts Using Natural Language Processing (2008) (4)
- Parallel branch-and-bound algorithm for constructing evolutionary trees from distance matrix (2005) (4)
- A unified approach for solving bottleneck k-bipartition problems (1991) (4)
- Enzyme Reaction Annotation Using Cloud Techniques (2013) (3)
- Feature Identification of Compensatory Gene Pairs without Sequence Homology in Yeast (2012) (3)
- Balancing minimum spanning trees and multiple-source minimum routing cost spanning trees on metric graphs (2006) (3)
- The summation and bottleneck minimization for single-step searching on weighted graphs (1993) (3)
- BioPortal: A Portal for Deployment of Bioinformatics Applications on Cluster and Grid Environments (2006) (3)
- Exposing Phylogenetic Relationships by Genome Rearrangement (2006) (3)
- A seriate coverage filtration approach for homology search (2004) (3)
- Approximation algorithms for some k‐source shortest paths spanning tree problems (2006) (3)
- An O(n) Algorithm for Finding an Optimal Position with Relative Distances in an Evolutionary Tree (1997) (3)
- HaplotypeCN: Copy Number Haplotype Inference with Hidden Markov Model and Localized Haplotype Clustering (2014) (3)
- CORAL-M: Heuristic coding region alignment method for multiple genome sequences (2010) (2)
- An Average Case Analysis of Monien and Speckenmeyer's Mechanical Theorem Proving Algorithm (1991) (2)
- An average case analysis of a resolution principle algorithm in mechanical theorem proving (1992) (2)
- Mapping short reads to a genome without using hash look-up table algorithm and Burrows Wheeler Transformation (2009) (2)
- Computer-Aided Engineering for Inference of Genetic Regulatory Networks Using Data from DNA Microarrays (2010) (2)
- Design checkpoint kinase 2 inhibitors by pharmacophore modeling and virtual screening techniques. (2013) (2)
- Modeling Signal Transduction of Neural System by Hybrid Petri Net Representation (2004) (2)
- CUDA-FRESCO: Frequency-Based RE-Sequencing Tool Based on CO-clustering Segmentation by GPU (2011) (2)
- On the bottleneck tree alignment problems (2010) (2)
- On Design and Implementation of a Bioinformatics Portal in Cluster and Grid Environments* (2006) (2)
- Novel Computing Technologies for Bioinformatics and Cheminformatics (2014) (2)
- Approximation Algorithms for k-Source Bottleneck Routing Cost Spanning Tree Problems (2004) (2)
- Balanced Multi-process Parallel Algorithm for Chemical Compound Inference with Given Path Frequencies (2010) (2)
- Towards design of a nailfold capillary microscopy image analysis and diagnosis framework using grid technology (2007) (2)
- Constructing Light Spanning Trees with Small Routing Cost (1999) (2)
- Approximation algorithms for some k-source shortest paths spanning tree problems (2006) (2)
- Single Step Searching in Weighted Block Graphs (1994) (2)
- Parallel branch-and-bound approach with MPI technology in inferring chemical compounds with path frequency (2009) (2)
- Approximation Algorithms for 2-Source Minimum Routing Cost k -Tree Problems (2007) (2)
- Memory test time reduction by interconnecting test items (2000) (2)
- Analysis of genome rearrangement by block-interchanges. (2007) (2)
- Guest editorial for the 25th International Conference on Genome Informatics (GIW/ISCB-Asia 2014) (2015) (2)
- Constrained sequence alignment: A general model and the hardness results (2007) (1)
- MetaSMC: a coalescent-based shotgun sequence simulator for evolving microbial populations (2018) (1)
- EXONSCAN: <u>EXON</u> prediction with <u>S</u>ignal detection and <u>C</u>oding region <u>A</u>lig<u>N</u>ment in homologous sequences (2005) (1)
- The emulation problem on trees (1995) (1)
- Finding the shortest boundary guard of a simple polygon (2001) (1)
- An Efficient Parallel Algorithm for Ultrametric Tree Construction Based on 3PR (2006) (1)
- An efficient algorithm for unique signature discovery on whole-genome EST databases (2004) (1)
- The Bottleneck Tree Alignment Problems (2006) (1)
- Efficient Emulations for X-trees and /w-ary Trees (1998) (1)
- A Parallel Algorithm for Three-Profile Alignment Method (2009) (1)
- On The Domatic Number of Bipartite Permutation Graphs (2007) (1)
- Ranking Unranking and Parallel Enumerating of Topological Orders (1991) (1)
- 3D-QSAR Study for Checkpoint Kinase 2 Inhibitors through Pharmacophore Hypotheses (2013) (1)
- A near-quadratic algorithm for the alpha-connected two-center decision problem (2002) (1)
- Automatic Prediction of Enzyme Functions from Domain Compositions Using Enzyme Reaction Prediction Scheme (2012) (1)
- A re-sequencing tool for high mismatch-tolerant short read alignment based on Burrows-Wheeler Transform (2010) (1)
- Metabolic classification of microbial genomes using functional probes (2012) (1)
- Identify amino acid candidates critical for function of rat imidase by cross-reference voting in imidase superfamily (2003) (1)
- Biological Feature Incorporated Alignment for Cross Species Analysis on Carbohydrate Binding Modules (2009) (1)
- Probe Selection with Fault Tolerance (2008) (1)
- Randomized algorithms for the on-line minimum matching problem on euclidean space (1995) (1)
- Editorial (2014) (0)
- An algorithm for the multiple patterns approximate string matching problem (2015) (0)
- Clover: a clustering-oriented de novo assembler for Illumina sequences (2020) (0)
- Comparative Gene Prediction Based on Gene Structure Conservation (2006) (0)
- Development of 3D-QSAR combination approach for discovering and analysing neuraminidase inhibitors in silico (2014) (0)
- A Brief Introduction of the String Matching Problems (2010) (0)
- DOBALI : a Domain-based Multiple Sequence Alignment Tool (2010) (0)
- Multiple fault diagnostics for communication protocols (1994) (0)
- An Efficient Parallel Algorithm for Ultrametric Tree Construction Based on 3 PR * (2006) (0)
- Using Conflicts to Derive Efficient Algorithms on the Single-Channel Broadcast Communication Model (1992) (0)
- 3-Points Relationship Based Parallel Algorithm for Minimum Ultrametric Tree Construction (2007) (0)
- Local Rules for Protein Folding on Triangular Lattice in the 2 D HP Model (2006) (0)
- Chemical Compounds with Path Frequency Using Multi-Core Technology (2009) (0)
- A simple algorithm for identifying integrons and gene cassettes in bacteria on next generation sequencing data (2016) (0)
- RAP : Refine a Prediction of Protein Secondary Structure (2006) (0)
- Clover: a clustering-oriented de novo assembler for Illumina sequences (2020) (0)
- Simpute: A Simple Genotype Imputation Method (2012) (0)
- An efficient emulation for tree-connected networks (1994) (0)
- Fast Algorithms for Simulating the CRCW Shared-Memory Computer on Reconfigurable Meshes (1994) (0)
- PreZon: Prediction by Zone and Its Application to Egg Productivity in Chickens (2012) (0)
- Optimum Communication Spanning Trees (2007) (0)
- An incremental algorithm for efficient unique signature discoveries on DNA databases (2010) (0)
- A Different Approach for Solving the Specified Diameter Partition Problem (1993) (0)
- An optimal external selection algorithm and its application in the Internet (2001) (0)
- Ultrametric Tree Construction and Evaluation Platform ( UTCE ) in Grid Computing System * (2006) (0)
- Por t-Specified Synchronizable Test Sequences Generation Method for Multi-Par ty Protocol Conformence Testing1 (2000) (0)
- Parallel Iterative Methods – Pipelined Iterative Methods on Combustion Problem (1999) (0)
- Develop integration modeling approach for discovery neuraminidase inhibitors in silico based on pharmacophore and CoMSIA models (2010) (0)
- Protein-Protein Interactions Inferred from Domain-Domain Interactions in Genogroup II Genotype 4 Norovirus Sequences (2013) (0)
- Two cost-effective fault-tolerant multistage interconnection networks (1991) (0)
- Classifying TIM Barrel Protein Domain Structure by an Alignment Approach Using Best Hit Strategy and PSI-BLAST (2011) (0)
- DOUBLE DOMINATION ON WEIGHTED GRAPHS (2007) (0)
- Random Generation of 2-Connected Graphs (2007) (0)
- An Average Case Analysis of the Branching Algorithm for Solving $k$-Satisfiability Problems (1998) (0)
- Automatic Test Timing Assignment for RAMs Using Linear Programming (1999) (0)
- TIM Barrel Protein Structure Classification Using Alignment Approach and Best Hit Strategy (2007) (0)
- Distribution and Structure of Polyketide Synthases in Aspergillus (2012) (0)
- Constrained Sequence Alignment : A Dedicated Version and Its Applications (2006) (0)
- Reconstruction of phyletic trees by global alignment of multiple metabolic networks (2013) (0)
- Multiple sequence alignment for functional correlation among low similarity sequences (2008) (0)
- A New Loop Partition Method-Clustering (1993) (0)
- Parallel Three-sequence Alignment with Space-efficient (2006) (0)
- Multiple genome sequences alignment algorithm based on coding regions (2011) (0)
- Drug resistance gene identification algorithm for next-generation sequencing data (2014) (0)
- Editorial--The 25th International Conference on Genome Informatics (GIW/ISCB-ASIA 2014). (2014) (0)
- A simple method for deriving I/O constraints from test sequences (1998) (0)
- Simpute: An Efficient Solution for Dense Genotypic Data (2013) (0)
- A Fast Technique for Constructing Evolutionary Tree with the Application of Compact Sets (2005) (0)
- Numerical Performance and Throughput Benchmark for Electronic Structure Calculations in PC-Linux Systems with New Architectures, Updated Compilers, and Libraries (2004) (0)
- CAPS Genomic Subtyping on Orthomyxoviridae (2009) (0)
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What Schools Are Affiliated With Chuan Yi Tang?
Chuan Yi Tang is affiliated with the following schools: