Cynthia Sharma
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German microbiologist
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Cynthia Sharmabiology Degrees
Biology
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Microbiology
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#1151
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Biology
Why Is Cynthia Sharma Influential?
(Suggest an Edit or Addition)According to Wikipedia, Cynthia Mira Sharma is a biologist, who is Chair of Molecular Infection Biology II at the University of Würzburg. Her research focuses on how bacterial pathogens regulate their gene expression to adapt to changing environments or stress conditions. She was awarded a European Research Council Consolidator Grant in 2022.
Cynthia Sharma's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III (2011) (2128)
- The primary transcriptome of the major human pathogen Helicobacter pylori (2010) (1097)
- Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq (2008) (581)
- Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures (2009) (508)
- An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803 (2011) (380)
- A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. (2007) (361)
- An atlas of Hfq‐bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs (2012) (349)
- Small RNA binding to 5' mRNA coding region inhibits translational initiation. (2008) (266)
- High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates (2013) (260)
- Global Transcriptional Start Site Mapping Using Differential RNA Sequencing Reveals Novel Antisense RNAs in Escherichia coli (2014) (251)
- Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome (2009) (218)
- Pervasive post‐transcriptional control of genes involved in amino acid metabolism by the Hfq‐dependent GcvB small RNA (2011) (207)
- Experimental approaches for the discovery and characterization of regulatory small RNA. (2009) (200)
- How to find small non-coding RNAs in bacteria (2005) (193)
- Identification of regulatory RNAs in Bacillus subtilis (2010) (193)
- The Primary Transcriptome of Barley Chloroplasts: Numerous Noncoding RNAs and the Dominating Role of the Plastid-Encoded RNA Polymerase[C][W][OA] (2012) (185)
- Evidence for an autonomous 5′ target recognition domain in an Hfq-associated small RNA (2010) (183)
- Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability (2009) (182)
- Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation (2015) (175)
- Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism (2010) (166)
- Differential RNA-seq: the approach behind and the biological insight gained. (2014) (154)
- READemption – A tool for the computational analysis of deep-sequencing-based transcriptome data (2014) (130)
- Global Regulatory Functions of the Staphylococcus aureus Endoribonuclease III in Gene Expression (2012) (127)
- Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes (2009) (126)
- CRISPR RNA-Dependent Binding and Cleavage of Endogenous RNAs by the Campylobacter jejuni Cas9. (2018) (105)
- Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq) (2016) (98)
- Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions (2011) (97)
- Photooxidative stress‐induced and abundant small RNAs in Rhodobacter sphaeroides (2009) (90)
- Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor (2011) (87)
- Comparative transcriptomics of two environmentally relevant cyanobacteria reveals unexpected transcriptome diversity (2014) (79)
- Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis (2014) (78)
- Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens (2012) (75)
- The transcriptional landscape of Chlamydia pneumoniae (2011) (73)
- The CsrA-FliW network controls polar localization of the dual-function flagellin mRNA in Campylobacter jejuni (2016) (68)
- A variable homopolymeric G-repeat defines small RNA-mediated posttranscriptional regulation of a chemotaxis receptor in Helicobacter pylori (2014) (68)
- Helicobacter pylori interferes with an embryonic stem cell micro RNA cluster to block cell cycle progression (2011) (64)
- Contribution of Hfq to photooxidative stress resistance and global regulation in Rhodobacter sphaeroides (2011) (61)
- An archaeal sRNA targeting cis- and trans-encoded mRNAs via two distinct domains (2012) (53)
- Noncanonical crRNAs derived from host transcripts enable multiplexable RNA detection by Cas9 (2021) (52)
- Target recognition, RNA methylation activity and transcriptional regulation of the Dictyostelium discoideum Dnmt2-homologue (DnmA) (2013) (47)
- In vivo and in vitro analysis of 6S RNA-templated short transcripts in Bacillus subtilis (2011) (47)
- Differential RNA-seq (dRNA-seq) for annotation of transcriptional start sites and small RNAs in Helicobacter pylori. (2015) (41)
- Transcriptome Complexity and Riboregulation in the Human Pathogen Helicobacter pylori (2012) (40)
- Small RNAs in Bacterial Virulence and Communication. (2016) (38)
- Small RNAs of the Bradyrhizobium/Rhodopseudomonas lineage and their analysis (2012) (38)
- The architecture and ppGpp-dependent expression of the primary transcriptome of Salmonella Typhimurium during invasion gene expression (2012) (36)
- The small non-coding RNA RsaE influences extracellular matrix composition in Staphylococcus epidermidis biofilm communities (2019) (29)
- Functional Characterization of the RNA Chaperone Hfq in the Opportunistic Human Pathogen Stenotrophomonas maltophilia (2012) (27)
- Profound Impact of Hfq on Nutrient Acquisition, Metabolism and Motility in the Plant Pathogen Agrobacterium tumefaciens (2014) (26)
- Experimental tools to identify RNA-protein interactions in Helicobacter pylori (2012) (24)
- Investigating CRISPR RNA Biogenesis and Function Using RNA-seq. (2015) (22)
- A non‐coding RNA from the intercellular adhesion (ica) locus of Staphylococcus epidermidis controls polysaccharide intercellular adhesion (PIA)‐mediated biofilm formation (2019) (21)
- A Repeat-Associated Small RNA Controls the Major Virulence Factors of Helicobacter pylori. (2020) (19)
- A three-dimensional intestinal tissue model reveals factors and small regulatory RNAs important for colonization with Campylobacter jejuni (2020) (19)
- A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence (2020) (18)
- Stable isotope labeling by amino acids in cell culture based proteomics reveals differences in protein abundances between spiral and coccoid forms of the gastric pathogen Helicobacter pylori. (2015) (18)
- Differential RNA Sequencing (dRNA‐Seq): Deep‐Sequencing‐Based Analysis of Primary Transcriptomes (2012) (15)
- In vivo mapping of RNA-RNA interactions in Staphylococcus aureus using the endoribonuclease III. (2013) (14)
- Identification of the RNA Pyrophosphohydrolase RppH of Helicobacter pylori and Global Analysis of Its RNA Targets* (2016) (14)
- The primary transcriptome of the Escherichia coli O104:H4 pAA plasmid and novel insights into its virulence gene expression and regulation (2016) (13)
- RNA Localization in Bacteria. (2018) (12)
- Ribosome-controlled transcription termination is essential for the production of antibiotic microcin C (2014) (11)
- Small RNAs and virulence in bacterial pathogens (2012) (11)
- Differences in the Transcriptomic Response of Campylobacter coli and Campylobacter lari to Heat Stress (2020) (10)
- dRNA-seq transcriptional profiling of the FK506 biosynthetic gene cluster in Streptomyces tsukubaensis NRRL18488 and general analysis of the transcriptome (2017) (10)
- Argonaute Proteins Affect siRNA Levels and Accumulation of a Novel Extrachromosomal DNA from the Dictyostelium Retrotransposon DIRS-1* (2014) (9)
- Interesting twists on small RNA themes in Pseudomonas aeruginosa (2011) (9)
- Small RNA mediated gradual control of lipopolysaccharide biosynthesis affects antibiotic resistance in Helicobacter pylori (2021) (8)
- Corrigendum to: HRIBO: high-throughput analysis of bacterial ribosome profiling data (2020) (6)
- The Rsm (Csr) post-transcriptional regulatory pathway coordinately controls multiple CRISPR–Cas immune systems (2021) (6)
- Tetrachloroethene respiration in Sulfurospirillum species is regulated by a two‐component system as unraveled by comparative genomics, transcriptomics, and regulator binding studies (2020) (5)
- Structural insights into the AapA1 toxin of Helicobacter pylori. (2019) (5)
- Automated transcription start site prediction for comparative Transcriptomics using the SuperGenome (2013) (5)
- RNase III-mediated processing of a trans-acting bacterial sRNA and its cis-encoded antagonist (2021) (4)
- Small RNAs that target G‐rich sequences are generated by diverse biogenesis pathways in Epsilonproteobacteria (2021) (3)
- Identifying Small Open Reading Frames in Prokaryotes with Ribosome Profiling (2021) (3)
- Identifying small ORFs in prokaryotes with ribosome profiling. (2021) (2)
- RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria (2021) (2)
- Spacer prioritization in CRISPR-Cas9 immunity is enabled by the leader RNA (2022) (1)
- Identification of RNA Binding Partners of CRISPR-Cas Proteins in Prokaryotes Using RIP-Seq. (2021) (1)
- Revealing the small proteome of Haloferax volcanii by combining ribosome profiling and small-protein optimised mass spectrometry (2023) (1)
- Complementary Ribo-seq approaches map the translatome and provide a small protein census in the foodborne pathogen Campylobacter jejuni (2022) (1)
- The Primary Transcriptome and Noncoding RNA Repertoire of Helicobacter pylori (2016) (1)
- Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis (2014) (1)
- Faculty Opinions recommendation of Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria. (2016) (1)
- Regulatory Mechanisms of Special Significance: Role of Small RNAs in Virulence Regulation (2013) (1)
- RNA recording in single bacterial cells using reprogrammed tracrRNAs. (2023) (1)
- Data analysis scripts for the transcriptional start site detection of Vibrio cholerae O1 (2014) (0)
- The architecture and ppGpp-dependent expression of the primary transcriptome of Salmonella Typhimurium during invasion gene expression (2012) (0)
- A segemehl manual ( version 0 . 1 . 7 ; rev 1 ) (2014) (0)
- Author response: RNase III-mediated processing of a trans-acting bacterial sRNA and its cis-encoded antagonist (2021) (0)
- Interplay of two small RNAs fine-tunes hierarchical flagellar gene expression in the foodborne pathogen Campylobacter jejuni (2023) (0)
- Small proteome of the nitrogen-fixing plant symbiont Sinorhizobium meliloti (2022) (0)
- A repeat-associated small RNA controls the major virulence factors of Helicobacter pylori. Eisenbart/Alzheimer et al. (2020) (0)
- READemption v0.3.3 (2014) (0)
- Going Deeper : Global Sequencing Approaches Identify Numerous sRNA Candidates and Place Riboregulators Centrally into Posttranscriptional Regulatory Networks (2016) (0)
- Unraveling the small proteome of the plant symbiont Sinorhizobium meliloti by ribosome profiling and proteogenomics (2023) (0)
- Identification of small regulatory RNAs and their targets in bacteria (2009) (0)
- Construction of hfq 3xFlag for co-immunoprecipitation. (2014) (0)
- Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq) (2016) (0)
- HRIBO: high-throughput analysis of bacterial ribosome profiling data (2020) (0)
- Global Transcriptional Start Site Mapping Using Differential RNA Sequencing Reveals Novel Antisense RNAs in <named-content content-type='genus-species' xlink:type='simple'>Escherichia coli</named-content> (2014) (0)
- An RNase III processed, antisense RNA pair regulates a Campylobacter jejuni colonization factor (2021) (0)
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