Daniel H. Huson
#118,019
Most Influential Person Now
German bioinformatician
Daniel H. Huson's AcademicInfluence.com Rankings
Daniel H. Husoncomputer-science Degrees
Computer Science
#4668
World Rank
#4927
Historical Rank
Database
#1876
World Rank
#1968
Historical Rank
Daniel H. Husonbiology Degrees
Biology
#6986
World Rank
#9819
Historical Rank
Systematics
#28
World Rank
#32
Historical Rank
Bioinformatics
#76
World Rank
#78
Historical Rank
Download Badge
Computer Science Biology
Daniel H. Huson's Degrees
- PhD Computer Science University of Tübingen
Similar Degrees You Can Earn
Why Is Daniel H. Huson Influential?
(Suggest an Edit or Addition)Daniel H. Huson's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Application of phylogenetic networks in evolutionary studies. (2006) (7186)
- The Sequence of the Human Genome (2001) (6572)
- Fast and sensitive protein alignment using DIAMOND (2014) (6183)
- MEGAN analysis of metagenomic data. (2007) (2726)
- SplitsTree: analyzing and visualizing evolutionary data (1998) (1417)
- Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks. (2012) (1339)
- Integrative analysis of environmental sequences using MEGAN4. (2011) (1291)
- Dendroscope: An interactive viewer for large phylogenetic trees (2007) (1221)
- MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data (2016) (1158)
- Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana (2007) (744)
- Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome (2008) (726)
- Metagenomics to Paleogenomics: Large-Scale Sequencing of Mammoth DNA (2006) (572)
- MetaSim—A Sequencing Simulator for Genomics and Metagenomics (2008) (457)
- Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis (2014) (431)
- Phylogenetic Networks - Concepts, Algorithms and Applications (2011) (421)
- Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs) (2005) (412)
- A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome (2002) (389)
- Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus (2017) (342)
- Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319. (2007) (315)
- Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution (2007) (284)
- SILVA, RDP, Greengenes, NCBI and OTT — how do these taxonomies compare? (2017) (260)
- Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project (2010) (253)
- Effects of Surgical and Dietary Weight Loss Therapy for Obesity on Gut Microbiota Composition and Nutrient Absorption (2015) (247)
- Reference-guided assembly of four diverse Arabidopsis thaliana genomes (2011) (244)
- Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium (2016) (241)
- Systematic enumeration of crystalline networks (1999) (228)
- CREST – Classification Resources for Environmental Sequence Tags (2012) (222)
- Whole-genome prokaryotic phylogeny (2005) (217)
- SplitsTree-a program for analyzing and visualizing evolutionary data (1997) (204)
- Disk-Covering, a Fast-Converging Method for Phylogenetic Tree Reconstruction (1999) (197)
- Whole-genome shotgun assembly and comparison of human genome assemblies (2004) (195)
- Characterization of the Gut Microbial Community of Obese Patients Following a Weight-Loss Intervention Using Whole Metagenome Shotgun Sequencing (2016) (191)
- A Survey of Combinatorial Methods for Phylogenetic Networks (2010) (185)
- Microbial community analysis using MEGAN. (2013) (181)
- Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG (2011) (161)
- Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico (2018) (160)
- Intestinal Dysbiosis, Barrier Dysfunction, and Bacterial Translocation Account for CKD-Related Systemic Inflammation. (2017) (159)
- CLUSEAN: a computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters. (2009) (149)
- Identification of plant microRNA homologs (2006) (149)
- Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis. (2019) (144)
- A covariotide model explains apparent phylogenetic structure of oxygenic photosynthetic lineages. (1998) (144)
- Evolution of Arabidopsis thaliana microRNAs from random sequences. (2008) (142)
- Constructing splits graphs (2004) (140)
- Phylogeny, Radiation, and Transoceanic Dispersal of New Zealand Alpine Buttercups: Molecular Evidence under Split Decomposition (2001) (139)
- Phylogenetic super-networks from partial trees (2004) (138)
- Methods for comparative metagenomics (2009) (136)
- The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus). (2008) (123)
- Reconstruction of Reticulate Networks from Gene Trees (2005) (122)
- The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery (2017) (119)
- Phylogenetic trees based on gene content (2004) (111)
- MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs (2017) (110)
- MALT: Fast alignment and analysis of metagenomic DNA sequence data applied to the Tyrolean Iceman (2016) (105)
- Soil biochar amendment shapes the composition of N2O-reducing microbial communities. (2016) (104)
- 48. MetaSim: A Sequencing Simulator for Genomics and Metagenomics (2011) (101)
- Drawing explicit phylogenetic networks and their integration into SplitsTree (2008) (99)
- Comparative analysis of four Campylobacterales (2004) (98)
- COPYCAT : cophylogenetic analysis tool (2007) (98)
- The greedy path-merging algorithm for contig scaffolding (2002) (98)
- Analyzing and Visualizing Sequence and Distance Data Using SplitsTree (1996) (94)
- Tanglegrams for rooted phylogenetic trees and networks (2011) (92)
- OSLay: optimal syntenic layout of unfinished assemblies (2007) (90)
- Introduction to the analysis of environmental sequences: metagenomics with MEGAN. (2012) (88)
- Invariable sites models and their use in phylogeny reconstruction. (2000) (87)
- Conservation and divergence of microRNA families in plants (2005) (82)
- Visual and statistical comparison of metagenomes (2009) (82)
- Human Salivary Amylase Gene Copy Number Impacts Oral and Gut Microbiomes. (2019) (82)
- The Conserved Exon Method for Gene Finding (2000) (78)
- Analysis of 16S rRNA environmental sequences using MEGAN (2011) (77)
- Computing recombination networks from binary sequences (2005) (71)
- Phylogenetic Networks: Introduction to phylogenetic networks (2010) (69)
- A poor man’s BLASTX—high-throughput metagenomic protein database search using PAUDA (2013) (69)
- The generation and classification of tile-k-transitive tilings of the Euclidean plane, the sphere and the hyperbolic plane (1993) (68)
- On tilings of the plane (1987) (66)
- Genome Sequence of Galleria mellonella (Greater Wax Moth) (2018) (65)
- Computing galled networks from real data (2009) (64)
- Endotoxicity of lipopolysaccharide as a determinant of T-cell-mediated colitis induction in mice. (2014) (64)
- Design of a compartmentalized shotgun assembler for the human genome (2001) (63)
- Solving Large Scale Phylogenetic Problems using DCM2 (1999) (62)
- Beyond Galled Trees - Decomposition and Computation of Galled Networks (2007) (61)
- Antibiotic Selection Pressure Determination through Sequence-Based Metagenomics (2015) (59)
- The classification of face-transitive periodic three-dimensional tilings (1993) (55)
- Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data (2019) (54)
- Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters (2009) (54)
- Fast computation of minimum hybridization networks (2012) (54)
- Comparison of multiple metagenomes using phylogenetic networks based on ecological indices (2010) (52)
- How molecules evolve in eubacteria. (2000) (46)
- The Orbifold Notation for Two-Dimensional Groups (2002) (46)
- Summarizing Multiple Gene Trees Using Cluster Networks (2008) (46)
- Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N2O formation (2017) (44)
- Estimating phylogenetic trees and networks using SplitsTree 4 (2004) (44)
- Tiling Space by Platonic Solids, I (1999) (41)
- Analysis of the intestinal microbiota using SOLiD 16S rRNA gene sequencing and SOLiD shotgun sequencing (2013) (40)
- On Three-Dimensional Space Groups (1999) (36)
- A metagenomic-based survey of microbial (de)halogenation potential in a German forest soil (2016) (33)
- Sequence and Expression Differences Underlie Functional Specialization of Arabidopsis MicroRNAs miR159 and miR319. (2007) (32)
- DIAMOND+MEGAN: Fast and Easy Taxonomic and Functional Analysis of Short and Long Microbiome Sequences (2021) (29)
- Filtered Z-closure supernetworks for extracting and visualizing recurrent signal from incongruent gene trees. (2008) (29)
- 4-Regular Vertex-Transitive Tilings of E3 (2000) (29)
- Phage tail-like particles are versatile bacterial nanomachines – A mini-review (2019) (28)
- RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys (2016) (28)
- Hybrid tree reconstruction methods (1999) (27)
- Comparing Assemblies Using Fragments and Mate-Pairs (2001) (27)
- Obtaining highly accurate topology estimates of evolutionary trees from very short sequences (1999) (27)
- The greedy path-merging algorithm for sequence assembly (2001) (26)
- Phylogenetic Networks: Algorithms and applications (2010) (26)
- LOCAS – A Low Coverage Assembly Tool for Resequencing Projects (2011) (26)
- Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads (2017) (25)
- The classification of 2-isohedral tilings of the plane (1992) (24)
- Short clones or long clones? A simulation study on the use of paired reads in metagenomics (2010) (24)
- Reducing Distortion in Phylogenetic Networks (2006) (24)
- Improved Layout of Phylogenetic Networks (2008) (24)
- The Isolate Caproiciproducens sp. 7D4C2 Produces n-Caproate at Mildly Acidic Conditions From Hexoses: Genome and rBOX Comparison With Related Strains and Chain-Elongating Bacteria (2020) (21)
- Analysis of Domain Architecture and Phylogenetics of Family 2 Glycoside Hydrolases (GH2) (2016) (21)
- Estimating the association between antibiotic exposure and colonisation with ESBL-producing Gram negative bacteria: a multicentre, prospective cohort study. (2019) (21)
- Identifying a species tree subject to random lateral gene transfer. (2012) (21)
- Recovery of complete genomes and non-chromosomal replicons from activated sludge enrichment microbial communities with long read metagenome sequencing (2021) (21)
- Extensive Mobilome-Driven Genome Diversification in Mouse Gut-Associated Bacteroides vulgatus mpk (2016) (21)
- Salmonella enterica genomes recovered from victims of a major 16th century epidemic in Mexico (2017) (19)
- Two-dimensional groups, orbifolds and tilings (1996) (19)
- Periodic Delone Tilings (1997) (19)
- Human salivary amylase gene copy number impacts oral and gut microbiomes (2018) (18)
- Distances that perfectly mislead. (2004) (17)
- Segment Match Refinement and Applications (2002) (17)
- Heaven and Hell Tilings (1991) (15)
- Autumn Algorithm—Computation of Hybridization Networks for Realistic Phylogenetic Trees (2018) (15)
- New common ancestor problems in trees and directed acyclic graphs (2010) (15)
- Drawing Rooted Phylogenetic Networks (2009) (14)
- Dynamics of the human gut phageome during antibiotic treatment (2018) (13)
- On the Application of Advanced Machine Learning Methods to Analyze Enhanced, Multimodal Data from Persons Infected with COVID-19 (2021) (12)
- Orbifold Triangulations and Crystallographic Groups (1997) (12)
- Visualization challenges for a new cyber-pharmaceutical computing paradigm (2001) (10)
- VisRD--visual recombination detection (2004) (10)
- Introduction to the Analysis of Environmental Sequences: Metagenomics with MEGAN. (2019) (10)
- Estimating Large Distances in Phylogenetic Reconstruction (1999) (10)
- Improved metagenome analysis using MEGAN5 (2013) (9)
- Functional Analysis in Metagenomics Using MEGAN 6 (2017) (9)
- A meta-viewer for biomolecular data (2003) (9)
- The classification of quasi-regular polyhedra of genus 2 (1992) (8)
- Distance Corrections on Recombinant Sequences (2003) (8)
- Tile-Transitive Partial Tilings of the Plane (1993) (7)
- Enriched environmental conditions modify the gut microbiome composition and fecal markers of inflammation in Parkinson’s disease (2019) (7)
- A four-color theorem for periodic tilings (1994) (7)
- Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data (2019) (7)
- Phylogenetic networks from distances (2010) (7)
- The structure of autocatalytic networks, with application to early biochemistry (2020) (6)
- Analysis procedures for assessing recovery of high quality, complete, closed genomes from Nanopore long read metagenome sequencing (2020) (6)
- MetaScope - Fast and accurate identification of microbes in metagenomic sequencing data (2015) (6)
- Using AnnoTree to Get More Assignments, Faster, in DIAMOND+MEGAN Microbiome Analysis (2021) (5)
- German Conference on Bioinformatics (2006) (5)
- Tilings and Symbols--A Report on the Uses of Symbolic Calculation in Tiling Theory (1999) (5)
- Normalising phylogenetic networks. (2020) (5)
- Enriched Environmental Conditions Modify the Gut Microbiome Composition and Fecal Markers of Inflammation in Parkinson’s Disease (2019) (3)
- Bioinformatics Support for Genome‐Sequencing Projects (2008) (3)
- Improving recovery of member genomes from enrichment reactor microbial communities using MinION–based long read metagenomics (2018) (3)
- MAIRA- real-time taxonomic and functional analysis of long reads on a laptop (2020) (3)
- Methylation of CpG 5962 in L1 of the human papillomavirus 16 genome as a potential predictive marker for viral persistence: A prospective large cohort study using cervical swab samples (2019) (3)
- Two finiteness theorems for periodic tilings of d-dimensional euclidean space (1998) (3)
- A simple statistical test of taxonomic or functional homogeneity using replicated microbiome sequencing samples. (2017) (3)
- Syntenic Layout of Two Assemblies of Related Genomes (2004) (3)
- METAGENOME ANALYSIS USING MEGAN (2007) (3)
- Phylogenetic networks from trees (2010) (2)
- What If I Don't Have a Tree?: Split Decomposition and Related Models (2003) (2)
- Interactive analysis of biosurfactants in fruit-waste fermentation samples using BioSurfDB and MEGAN (2021) (2)
- MEtaGenome ANalyzer (MEGAN): Metagenomic Expert Resource (2014) (2)
- Comparative Genomics, RECOMB 2005 International Workshop, RCG 2005, Dublin, Ireland, September 18-20, 2005, Proceedings (2005) (2)
- Interplay of Various Evolutionary Modes in Genome Diversification and Adaptive Evolution of the Family Sulfolobaceae (2021) (2)
- Visualization Challenges for a New Cyberpharmaceutical Computing (2001) (2)
- CASS: Combining phylogenetic trees into a phylogenetic network (2009) (2)
- etagenome Analysis using Megan (2007) (2)
- Phylogenetic Networks: Glossary (2010) (2)
- Special Section: Phylogenetics (2009) (2)
- User Manual for ReadSim V 0 . 7 (2006) (1)
- Phylogenetic Networks: Phylogenetic trees (2010) (1)
- Phylogenetic Networks: Basics (2010) (1)
- Enhanced COVID-19 data for improved prediction of survival (2020) (1)
- Bioinformatics support for the Tübiom community gut microbiome project (2016) (1)
- Visualization of Periodic Tilings (1997) (1)
- An integrated systems-biology platform for power-to-gas technology (2022) (1)
- Ribbon tilings from spherical ones (1996) (1)
- Comparative Metagenome Analysis Using MEGAN (2011) (1)
- Tegula - exploring a galaxy of two-dimensional periodic tilings (2020) (1)
- Phylogenetic Networks: Clusters and rooted phylogenetic networks (2010) (1)
- MuLan-Methyl - Multiple Transformer-based Language Models for Accurate DNA Methylation Prediction (2023) (1)
- Analysis of the intestinal microbiota using SOLiD 16S rRNA gene sequencing and SOLiD shotgun sequencing (2013) (1)
- Final Report for the ‘ Phylogenetics ’ Programme (2008) (1)
- Visualization challenges for a new cyberpharmaceutical computing paradigm (2001) (1)
- CrossLink: visualization and exploration of sequence relationships between (micro) RNAs (2006) (1)
- RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys (2016) (1)
- OP026 AN INTEGRATED MULTI-OMICS APPROACH TO STUDY THE GUEST HOST METABOLIC CROSSTALK DURING RESTRICTIVE OBESITY INTERVENTION (2012) (1)
- DeepToA: An Ensemble Deep-Learning Approach to Predicting the Theater of Activity of a Microbiome (2022) (1)
- Searching for pathogens in the earliest know colonial epidemic burial in Mexico, Teposcolula Yucundaa (2017) (1)
- Microbial Phylogenetic Context Using Phylogenetic Outlines (2021) (1)
- Searching for pathogens in a New World colonial epidemic burial (2016) (0)
- Phylogenetic Networks: Preface (2010) (0)
- Recovery of complete genomes and non-chromosomal replicons from activated sludge enrichment microbial communities with long read metagenome sequencing (2021) (0)
- Sequence analysis Identification of plant microRNA homologs (2006) (0)
- Proceedings of the 4th bwHPC Symposium (2018) (0)
- Thylacinus cynocephalus The mitochondrial genome sequence of the Tasmanian tiger ( Material Supplemental (2009) (0)
- Phylogenetic Networks: References (2010) (0)
- Phylogenetic Networks: Drawing phylogenetic networks (2010) (0)
- Anti-consensus: detecting trees that have an evolutionary signal that is lost in consensus (2019) (0)
- An Inventory of Common Sequence Polymorphisms for Arabidopsis (2006) (0)
- Phylogenetic distance and structural diversity directing a reclassification of glycopeptide antibiotics (2023) (0)
- An Algorithmic Approach to Tilings (1995) (0)
- Phylogenetic Networks: Phylogenetic networks from splits (2010) (0)
- MeganServer: facilitating interactive access to metagenomic data on a server (2022) (0)
- 3 Pairwise alignment (2010) (0)
- Salmonella enterica genomes from victims of a major 16 th century epidemic 1 in Mexico 2 3 (2017) (0)
- Different survival strategies of gut commensal bacteria in IBD (2013) (0)
- Phylogenetic Networks: Phylogenetic networks from clusters (2010) (0)
- Phylogenetics COPYCAT : cophylogenetic analysis tool (2007) (0)
- Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads (2017) (0)
- Sequencing of Mammoth DNA Metagenomics to Paleogenomics : Large-Scale (2007) (0)
- Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico (2018) (0)
- 12 Segment match refinement and applications (2008) (0)
- Phylogenetic networks from triples or quartets (2010) (0)
- Phylogenetic Networks: Sequence alignment (2010) (0)
- Bioinformatics support for the Tubiom community gut microbiome project (2016) (0)
- Easy efficient HDR-based targeted knock-in in Saccharomyces cerevisiae genome using CRISPR-Cas9 system (2022) (0)
- German Conference on Bioinformatics GCB 2006, 19.09. 2006 - 22.09. 2006 in Tübingen, Germany (2006) (0)
- Human gut mobileome during antibiotic therapy. A trajectory-based approach to analysis of the metagenomic time-series datasets (2019) (0)
- Phylogenetic Networks: Software (2010) (0)
- Classification of DNA methyltransferases with Profile Hidden Markov Models (2005) (0)
- Introduction to Algorithms in Phylogeny (2005) (0)
- Phylogenetic Networks: Theory (2010) (0)
- Tree Reconstruction Methods (2007) (0)
- Proceedings of the 2005 international conference on Comparative Genomics (2005) (0)
- Additional data for preprint: 'Analysis procedures for assessing recovery of high quality, complete, closed genomes from Nanopore long read metagenome sequencing' (2020) (0)
- Phylogenetic Networks: Phylogenetic networks from sequences (2010) (0)
- MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs (2018) (0)
- Dynamics of the human gut phageome during the antibiotics therapy (2018) (0)
- Comparison of functional classification systems (2022) (0)
- 2 GALLED NETWORKS COMPARED WITH GALLED TREES , LEVEL K NETWORKS AND MORE GENERAL ROOTED PHYLOGENETIC NETWORKS (2018) (0)
- Phylogenomic analysis of Pristionchus nematodes with the focus on orphan genes (2019) (0)
- ISMB/ECCB 2013 Proceedings Papers Committee (2013) (0)
- SILVA, RDP, Greengenes, NCBI and OTT — how do these taxonomies compare? (2017) (0)
- Genome analysis OSLay : optimal syntenic layout of unfinished assemblies (2007) (0)
- Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N2O formation (2017) (0)
- Perturbation metatranscriptomics for studying complex microbial communities (2014) (0)
- Phylogenetic Networks: Splits and unrooted phylogenetic networks (2010) (0)
- Phylogenetic context using phylogenetic outlines (2021) (0)
This paper list is powered by the following services:
What Schools Are Affiliated With Daniel H. Huson?
Daniel H. Huson is affiliated with the following schools:
