Daniel Janies
#151,723
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American biologist
Daniel Janies's AcademicInfluence.com Rankings
Daniel Janiesbiology Degrees
Biology
#13834
World Rank
#17427
Historical Rank
#2736
USA Rank
Systematics
#129
World Rank
#156
Historical Rank
#27
USA Rank
Bioinformatics
#195
World Rank
#197
Historical Rank
#23
USA Rank
Evolutionary Biology
#391
World Rank
#418
Historical Rank
#109
USA Rank
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Biology
Daniel Janies's Degrees
- PhD Biological Sciences University of California, Berkeley
- Masters Biological Sciences University of California, Berkeley
- Bachelors Biology University of California, Berkeley
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Why Is Daniel Janies Influential?
(Suggest an Edit or Addition)According to Wikipedia, Daniel Andrew Janies is an American scientist who has made significant contributions in the field of evolutionary biology and on the development of tools for the study of evolution and the spread of pathogens. He is involved with research for the United States Department of Defense and has advised multiple instances of the government on methods for disease surveillance.
Daniel Janies's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Bacterial 16S Sequence Analysis of Severe Caries in Young Permanent Teeth (2010) (283)
- Multiple sequence alignment in phylogenetic analysis. (2000) (263)
- GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses1[W][OA] (2008) (254)
- Genome Analysis Linking Recent European and African Influenza (H5N1) Viruses (2007) (228)
- Total Evidence, Sequence Alignment, Evolution of Polychrotid Lizards, and a Reclassification of the Iguania (Squamata: Iguania) (2001) (182)
- Zika Virus: Medical Countermeasure Development Challenges (2016) (178)
- CORE: A Phylogenetically-Curated 16S rDNA Database of the Core Oral Microbiome (2011) (167)
- Dynamic homology and phylogenetic systematics: a unified approach using POY (2006) (126)
- Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States. (2016) (117)
- Phylogenetic relationships of extant echinoderm classes (2001) (114)
- Tracking the geographical spread of avian influenza (H5N1) with multiple phylogenetic trees (2010) (113)
- Relationships among development, ecology, and morphology in the evolution of Echinoderm larvae and life cycles (1997) (101)
- Life Cycle Evolution in Asteroids: What is a Larva? (1993) (96)
- Bioinformatics Research and Applications (2008) (90)
- Echinoderm phylogeny including Xyloplax, a progenetic asteroid. (2011) (85)
- Genetic Diversity and Recombination of Porcine Sapoviruses (2005) (76)
- First detection of Anopheles stephensi Liston, 1901 (Diptera: culicidae) in Ethiopia using molecular and morphological approaches. (2018) (75)
- Eco-Virological Approach for Assessing the Role of Wild Birds in the Spread of Avian Influenza H5N1 along the Central Asian Flyway (2012) (73)
- Genomic analysis and geographic visualization of the spread of avian influenza (H5N1). (2007) (72)
- Quasispecies of bovine enteric and respiratory coronaviruses based on complete genome sequences and genetic changes after tissue culture adaptation (2007) (62)
- Evolution of drug resistance in multiple distinct lineages of H5N1 avian influenza. (2009) (60)
- Molecular Phylogeny of Coral-Reef Sea Cucumbers (Holothuriidae: Aspidochirotida) Based on 16S Mitochondrial Ribosomal DNA Sequence (2004) (59)
- Complete genomic sequences, a key residue in the spike protein and deletions in nonstructural protein 3b of US strains of the virulent and attenuated coronaviruses, transmissible gastroenteritis virus and porcine respiratory coronavirus (2006) (55)
- A Molecular Perspective on the Phylogeny of the Girdled Lizards (Cordylidae, Squamata) (2001) (48)
- Geographical distribution of Anopheles stephensi in eastern Ethiopia (2019) (46)
- Evolution of genomes, host shifts and the geographic spread of SARS‐CoV and related coronaviruses (2008) (41)
- Molecular Analysis of H7 Avian Influenza Viruses from Australia and New Zealand: Genetic Diversity and Relationships from 1976 to 2007 (2010) (41)
- Insecticide resistance in Anopheles stephensi in Somali Region, eastern Ethiopia (2019) (38)
- Selection for resistance to oseltamivir in seasonal and pandemic H1N1 influenza and widespread co-circulation of the lineages (2010) (34)
- Predictions of the SARS-CoV-2 Omicron Variant (B.1.1.529) Spike Protein Receptor-Binding Domain Structure and Neutralizing Antibody Interactions (2021) (33)
- The phylogeny of extant starfish (Asteroidea: Echinodermata) including Xyloplax, based on comparative transcriptomics. (2017) (32)
- First global molecular phylogeny and biogeographical analysis of two arachnid orders (Schizomida and Uropygi) supports a tropical Pangean origin and mid‐Cretaceous diversification (2017) (31)
- Development, evolution, and corroboration (1999) (31)
- Efficiency of parallel direct optimization. (2001) (30)
- Different Regions of HIV-1 Subtype C env Are Associated with Placental Localization and In Utero Mother-to-Child Transmission (2011) (29)
- Sea Stars, Sea Urchins, and Allies: Echinoderms of Florida and the Caribbean.Gordon Hendler , John E. Miller , David L. Pawson , Porter M. Kier (1997) (29)
- Resurrection of Bohadschia bivittata from B. marmorata (Holothuroidea: Holothuriidae) based on behavioral, morphological, and mitochondrial DNA evidence. (2005) (29)
- Updated Phylogeny of Chikungunya Virus Suggests Lineage-Specific RNA Architecture (2019) (27)
- Xyloplax is an asteroid (1998) (25)
- StrainHub: A phylogenetic tool to construct pathogen transmission networks (2019) (25)
- EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms (2016) (25)
- Large scale genotype-phenotype correlation analysis based on phylogenetic trees (2007) (24)
- The Supramap project: linking pathogen genomes with geography to fight emergent infectious diseases (2011) (24)
- Bacterial communities of oceanic sea star (Asteroidea: Echinodermata) larvae (2016) (23)
- COVID-19 reopening strategies at the county level in the face of uncertainty: Multiple Models for Outbreak Decision Support (2020) (23)
- Molecular evolution of Zika virus as it crossed the Pacific to the Americas (2017) (22)
- Diet-induced shifts in the crown-of-thorns (Acanthaster sp.) larval microbiome (2018) (21)
- Sequence-based identification of Anopheles species in eastern Ethiopia (2019) (21)
- Highly Derived Coelomic and Water-Vascular Morphogenesis in a Starfish with Pelagic Direct Development. (1993) (21)
- Health-care hit or miss? (2011) (21)
- Comparative Phylogenetic Studies on Schistosoma japonicum and Its Snail Intermediate Host Oncomelania hupensis: Origins, Dispersal and Coevolution (2015) (20)
- Detection of high prevalence of Plasmodium falciparum histidine-rich protein 2/3 gene deletions in Assosa zone, Ethiopia: implication for malaria diagnosis (2021) (18)
- Integration of phylogenomics and molecular modeling reveals lineage-specific diversification of toxins in scorpions (2018) (18)
- Large-scale phylogenetic analysis on current HPC architectures (2008) (17)
- Frequent expansion of Plasmodium vivax Duffy Binding Protein in Ethiopia and its epidemiological significance (2019) (16)
- An operational machine learning approach to predict mosquito abundance based on socioeconomic and landscape patterns (2019) (16)
- The first complete mitochondrial genome of the sand dollar Sinaechinocyamus mai (Echinoidea: Clypeasteroida). (2020) (15)
- Theory and practice of parallel direct optimization. (2002) (15)
- Venomix: a simple bioinformatic pipeline for identifying and characterizing toxin gene candidates from transcriptomic data (2018) (15)
- Regeneration in bipinnaria larvae of the bat star Patiria miniata induces rapid and broad new gene expression (2016) (15)
- Whole genome sequencing of Plasmodium vivax isolates reveals frequent sequence and structural polymorphisms in erythrocyte binding genes (2020) (15)
- Phylotranscriptomic analysis uncovers a wealth of tissue inhibitor of metalloproteinases variants in echinoderms (2015) (15)
- Changing of the Genomic Pattern of Salmonella Enteritidis Strains Isolated in Brazil Over a 48 year-period revealed by Whole Genome SNP Analyses (2018) (15)
- Reassortment Networks for Investigating the Evolution of Segmented Viruses (2010) (14)
- Identification of a neuropeptide precursor protein that gives rise to a "cocktail" of peptides that bind Cu(II) and generate metal-linked dimers. (2016) (14)
- A phylogeny of sand flies (Diptera: Psychodidae: Phlebotominae), using recent Ethiopian collections and a broad selection of publicly available DNA sequence data (2015) (14)
- A new strategy to infer circularity applied to four new complete frog mitogenomes (2018) (13)
- Active Notch signaling is required for arm regeneration in a brittle star (2019) (13)
- Global spread and evolution of viral haemorrhagic septicaemia virus. (2011) (12)
- Grid-based management of biomedical data using an XML-based distributed data management system (2005) (12)
- An XML-based System for Synthesis of Data from Disparate Databases (2006) (11)
- SpeciesMap: a web-based application for visualizing the overlap of distributions and pollution events, with a list of fishes put at risk by the 2010 Gulf of Mexico oil spill (2012) (10)
- Reassortment Networks and the Evolution of Pandemic H1N1 Swine-Origin Influenza (2011) (10)
- Multi-species SIR models from a dynamical Bayesian perspective (2013) (9)
- Phylogeny of Echinoderm Hemoglobins (2015) (9)
- Fundamental evolution of all Orthocoronavirinae including three deadly lineages descendent from Chiroptera‐hosted coronaviruses: SARS‐CoV, MERS‐CoV and SARS‐CoV‐2 (2021) (9)
- Phylogeny Reconstruction via Direct Optimization of DNA and other data (2002) (9)
- Glucose-6-Phosphate Dehydrogenase Deficiency Genetic Variants in Malaria Patients in Southwestern Ethiopia. (2017) (9)
- Genetic diversity of Anopheles stephensi in Ethiopia provides insight into patterns of spread (2021) (9)
- FLAVi: An Enhanced Annotator for Viral Genomes of Flaviviridae (2020) (8)
- Genome informatics of influenza A: from data sharing to shared analytical capabilities (2010) (8)
- A comparison of supermatrix and supertree methods for multilocus phylogenetics using organismal datasets (2013) (8)
- Phylogenetic visualization of the spread of H7 influenza A viruses (2015) (7)
- Ensemble machine learning modeling for the prediction of artemisinin resistance in malaria (2019) (7)
- Envisioning a future for a spatial-health CyberGIS marketplace (2013) (7)
- Tracking a serial killer: Integrating phylogenetic relationships, epidemiology, and geography for two invasive meningococcal disease outbreaks (2018) (7)
- Exploring Feasibility of Multivariate Deep Learning Models in Predicting COVID-19 Epidemic (2021) (7)
- Plasmodium vivax from Duffy-Negative and Duffy-Positive Individuals Shares Similar Gene Pool in East Africa. (2021) (7)
- Four Challenges Associated With Current Mathematical Modeling Paradigm of Infectious Diseases and Call for a Shift (2020) (6)
- Evolution of starfishes: Morphology, molecules, development, and paleobiology. Introduction to the symposium (2000) (6)
- Phylogenetic relationships of extant echinoderm classes 1 (2001) (6)
- Genetic variation of Plasmodium falciparum histidine-rich protein 2 and 3 in Assosa zone, Ethiopia: its impact on the performance of malaria rapid diagnostic tests (2021) (5)
- Selection and Utility of Single Nucleotide Polymorphism Markers to Reveal Fine-Scale Population Structure in Human Malaria Parasite Plasmodium falciparum (2018) (5)
- Analysis and visualization of H7 influenza using genomic, evolutionary and geographic information in a modular web service (2012) (5)
- Discovery of Adults Linked to Cloning Oceanic Starfish Larvae (Oreaster, Asteroidea: Echinodermata) (2019) (5)
- Regular ArticleRelationships among development, ecology, and morphology in the evolution of Echinoderm larvae and life cycles (1997) (5)
- Impact of SARS-CoV-2 vaccination of children ages 5–11 years on COVID-19 disease burden and resilience to new variants in the United States, November 2021-March 2022: a multi-model study (2022) (5)
- Enhanced genome annotation strategy provides novel insights on the phylogeny of Flaviviridae (2019) (4)
- Phylogenetic Concepts and Tools Applied to Epidemiologic Investigations of Infectious Diseases. (2019) (4)
- Comparison of Viral COVID-19 Sina Weibo and Twitter Contents: a Novel Feature Extraction and Analytical Workflow. (2020) (4)
- Patch dynamics modeling framework from pathogens’ perspective: Unified and standardized approach for complicated epidemic systems (2020) (4)
- Analysis of the Knockdown Resistance Locus (kdr) in Anopheles stephensi, An. arabiensis, and Culex pipiens s.l. for Insight Into the Evolution of Target-site Pyrethroid Resistance in Eastern Ethiopia (2022) (4)
- Syndromic Surveillance of Infectious Diseases meets Molecular Epidemiology in a Workflow and Phylogeographic Application (2015) (4)
- Tracking of Anopheles stephensi in Ethiopia using mitochondrial DNA reveals pattern of spread (2021) (3)
- Towards Phylogenomic Reconstruction (2007) (3)
- Shallow-Water Holothuroids (Echinodermata) of Yap, Federated States of Micronesia1 (2014) (3)
- Fundamental evolution of all Orthocoronavirinae including three deadly lineages descendent from Chiroptera‐hosted coronaviruses: SARS‐CoV, MERS‐CoV and SARS‐CoV‐2 (2021) (3)
- Modeling the life cycle of echinoderm larvae clones (2020) (3)
- A Novel Machine Learning Framework for Comparison of Viral COVID-19–Related Sina Weibo and Twitter Posts: Workflow Development and Content Analysis (2021) (3)
- Cladograms with Path to Event (ClaPTE): A novel algorithm to detect associations between genotypes or phenotypes using phylogenies (2015) (3)
- Evaluation of PfHRP2 and PfLDH Malaria Rapid Diagnostic Test Performance in Assosa Zone, Ethiopia. (2020) (3)
- Evolution of endemic and sylvatic lineages of dengue virus (2020) (2)
- Efficiency of Parallel Direct Optimization (2001) (2)
- A parallelized strategy for epistasis analysis based on Empirical Bayesian Elastic Net models (2020) (2)
- Comparison of the knockdown resistance locus (kdr) in Anopheles stephensi, An. arabiensis, and Culex pipiens s.l. suggests differing mechanisms of pyrethroid resistance in east Ethiopia (2020) (2)
- Sequence-based identification of Anopheles species in eastern Ethiopia (2019) (2)
- Modeling Plasmodium falciparum Diagnostic Test Sensitivity Using Machine Learning With Histidine-Rich Protein 2 Variants (2020) (2)
- Spread of Middle East Respiratory Coronavirus: Genetic versus Epidemiological Data (2017) (1)
- Large-Scale Phylogenetic Analysis for the Study of Zoonosis and Assessment of Influenza Surveillance (2001) (1)
- REVIEW Multiple Sequence Alignment in Phylogenetic Analysis (2000) (1)
- Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research (2022) (1)
- Detection of high prevalence of Plasmodium falciparum histidine-rich protein 2/3 gene deletions in Assosa zone, Ethiopia: implication for malaria diagnosis (2021) (1)
- Projected resurgence of COVID-19 in the United States in July—December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination (2022) (1)
- Sequencing Data of North American SARS-CoV-2 Isolates Shows Widespread Complex Variants (2021) (1)
- Large-Scale Phylogenetic Analysis of Emerging Infectious Diseases (2008) (1)
- Genetic capitalism and stabilizing selection of antimicrobial resistance genotypes in Escherichia coli. (2020) (1)
- Heat efficiently inactivates coronaviruses inside vehicles (2021) (1)
- A subterminal growth zone at arm tip likely underlies life-long indeterminate growth in brittle stars (2022) (1)
- Fundamentals of genomic epidemiology, lessons learned from the coronavirus disease 2019 (COVID-19) pandemic, and new directions (2021) (1)
- Phylogenomics of 'Orthocoronavirinae': evolutionary relationships between coronaviruses and their hosts (2020) (0)
- Predicting changes in neutralizing antibody activity for SARS-CoV-2 XBB.1.5 using in silico protein modeling (2023) (0)
- INTRODUCTION (2001) (0)
- EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms (2016) (0)
- Deuterostome Evolution: Large Data Set Analysis (2004) (0)
- Genomic analysis and geographic visualization of H5N1 and SARS-CoV. (2007) (0)
- FLAVi‐Web: A Web Annotator for Viral Genomes of Flaviviridae with a Revised Phylogeny of the Family (2020) (0)
- A Novel Machine Learning Framework for Comparison of Viral COVID-19–Related Sina Weibo and Twitter Posts: Workflow Development and Content Analysis (Preprint) (2020) (0)
- Bacterial communities of oceanic sea star (Asteroidea: Echinodermata) larvae (2016) (0)
- Genetic variations of Plasmodium falciparum circumsporozoite protein and the impact on interactions with human immunoproteins and malaria vaccine efficacy. (2023) (0)
- A quantification of the power required to correct for pitching due to center of mass-center of buoyancy misalignment in rock bass (Ambloplites rupestris). (1987) (0)
- Genetic Variations of Plasmodium Falciparum Histidine-rich Protein 2 and 3 in Assosa Zone, Ethiopia: Its Impact on the Performance of Malaria Rapid Diagnostic Tests (2021) (0)
- Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research (2022) (0)
- EchinoDB: an update to the web-based application for genomic and transcriptomic data on echinoderms (2022) (0)
- SpeciesMap: a web-based application for visualizing the overlap of distributions and pollution events, with a list of fishes put at risk by the 2010 Gulf of Mexico oil spill (2012) (0)
- Performance of PfHRP2 and PfPLDH Rapid Diagnostics Test for Diagnosis of Plasmodium falciparum in Assosa Zone, Northwest Ethiopia (2020) (0)
- Synergistic Sharing of Data and Tools to Enable Team Science (2013) (0)
- Effects of light color and energy on the production, diversity, and genera richness of periphyton colonies. (1987) (0)
- Gene Polymorphisms Among Plasmodium vivax Geographical Isolates and the Potential as New Biomarkers for Gametocyte Detection (2022) (0)
- Updated Phylogeny of Chikungunya Virus Reveals Lineage-Specific RNA Architecture (2019) (0)
- Multiple models for outbreak decision support in the face of uncertainty (2023) (0)
- An operational machine learning approach to predict mosquito abundance based on socioeconomic and landscape patterns (2019) (0)
- Protein interaction analysis of Plasmodium falciparum circumsporozoite protein variants with human immunoproteins explains RTS,S vaccine efficacy in Ghana (2021) (0)
- Parallel computer processing in systematics (2004) (0)
- Ensemble machine learning modeling for the prediction of artemisinin resistance in malaria. (2020) (0)
- Genetic variation of Plasmodium falciparum histidine-rich protein 2 and 3 in Assosa zone, Ethiopia: its impact on the performance of malaria rapid diagnostic tests (2021) (0)
- Diet-induced shifts in the crown-of-thorns (Acanthaster sp.) larval microbiome (2018) (0)
- Impact of SARS-CoV-2 vaccination of children ages 5–11 years on COVID-19 disease burden and resilience to new variants in the United States, November 2021–March 2022: a multi-model study (2022) (0)
- Assembling the Echinoderm Tree of Life: Challenges and Plans (2010) (0)
- Evolution of Starfishes: Morphology, Molecules, Development, and Paleobiology. Introduction to the Symposium1 (2000) (0)
- CONGRUENCE BETWEEN THE MORPHOLOGIC TREE AND MOLECULAR TREE: A CASE STUDY OF CLYPEASTEROIDA BASED ON THE NEW AND COMPLETE MITOCHONDRIAL GENOME OF SINAECHINOCYAMUS MAI (ECHINODERMATA: ECHINOIDEA) (2020) (0)
- Progress in Parasite Genomics and Its Application to Current Challenges in Malaria Control (2021) (0)
- H7 Australian Avian Influenza Supplemental Material (2009) (0)
- A new species of Astropecten (Echinodermata: Asteroidea: Paxillosida: Astropectinidae) and a comparison of the Astropecten species from the Gulf of Mexico and the East Florida Shelf. (2019) (0)
- Heterotopy, pelagic direct development, and new body plans in velatid asteroids (2020) (0)
- Multi-species SIR models from a dynamical Bayesian perspective (2013) (0)
- Some Clarifications on Phylogenetic Sequence Analysis , Dynamic Homology , Structural Alignment , and the use of POY : A Response to Kjer et al . 2007 (2007) (0)
- Ensemble machine learning modeling for the prediction of artemisinin resistance in malaria. (2020) (0)
- Genotypic and phenotypic heterogeneity in the U3R region of HIV type 1 subtype C. (2014) (0)
- Changing of the Genomic Pattern of Salmonella Enteritidis Strains Isolated in Brazil Over a 48 year-period revealed by Whole Genome SNP Analyses (2018) (0)
- Ensemble machine learning modeling for the prediction of artemisinin resistance in malaria. (2020) (0)
- Visual analytics on the spread of pathogens (2016) (0)
- MAP tree from MRBAYES search on clustalw alignment of molecular data (2011) (0)
- Continuation of Novel Analytical and Empircal Approaches to the Origin and Prediction of Pathogenicity (2014) (0)
- Ensemble machine learning modeling for the prediction of artemisinin resistance in malaria. (2020) (0)
- Low density Plasmodium infections and G6PD deficiency among malaria suspected febrile individuals in Ethiopia (2022) (0)
- Implementing landscape genetics in molecular epidemiology to determine drivers of vector‐borne disease: A malaria case study (2023) (0)
- Genetic diversity of Anopheles stephensi in Ethiopia provides insight into patterns of spread (2021) (0)
- A subterminal growth zone at arm tip likely underlies life-long indeterminate growth in brittle stars (2022) (0)
- Ensemble machine learning modeling for the prediction of artemisinin resistance in malaria [version 5; peer review: 1 approved, 1 approved with reservations] (2021) (0)
- Phylogenetic methods for computationally correlating genotypes and phenotypes (2005) (0)
- Content and sentiment surveillance (CSI): A critical component for modeling modern epidemics (2023) (0)
- CON tree from MRBAYES search on implied alignment and phenotypic data (2011) (0)
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