David L Robertson
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Computer Science
David L Robertson's Degrees
- PhD Computer Science Stanford University
- Masters Computer Science University of California, Berkeley
- Bachelors Computer Science University of California, Berkeley
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(Suggest an Edit or Addition)David L Robertson's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- SARS-CoV-2 variants, spike mutations and immune escape (2021) (1886)
- Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes (1999) (1806)
- HIV-1 Nomenclature Proposal (2000) (985)
- Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity (2020) (819)
- Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity (2020) (819)
- Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (2021) (806)
- Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic (2020) (713)
- SARS-CoV-2 evolution during treatment of chronic infection (2021) (647)
- Recombination in HIV-1 (1995) (615)
- Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study (2021) (488)
- Mapping the human genetic architecture of COVID-19 (2021) (455)
- Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity (2021) (443)
- Genome-Wide Classification and Evolutionary Analysis of the bHLH Family of Transcription Factors in Arabidopsis, Poplar, Rice, Moss, and Algae1[W] (2010) (437)
- The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin (1996) (391)
- Genetic diversity of human immunodeficiency virus type 2: evidence for distinct sequence subtypes with differences in virus biology (1994) (387)
- A Comprehensive Panel of Near-Full-Length Clones and Reference Sequences for Non-Subtype B Isolates of Human Immunodeficiency Virus Type 1 (1998) (305)
- Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7 (2021) (285)
- Recombination in AIDS viruses (1995) (278)
- Recurrent emergence and transmission of a SARS-CoV-2 spike deletion H69/V70 (2020) (269)
- The origins of SARS-CoV-2: A critical review (2021) (235)
- Choose your partners: dimerization in eukaryotic transcription factors. (2008) (217)
- A new human immunodeficiency virus derived from gorillas (2009) (207)
- Near full-length clones and reference sequences for subtype C isolates of HIV type 1 from three different continents. (2001) (197)
- Protein-protein interaction networks and biology—what's the connection? (2008) (193)
- The history of SIVS and AIDS: epidemiology, phylogeny and biology of isolates from naturally SIV infected non-human primates (NHP) in Africa. (2004) (175)
- All duplicates are not equal: the difference between small-scale and genome duplication (2007) (173)
- Human immunodeficiency virus: Phylogeny and the origin of HIV-1 (2001) (167)
- CoV-GLUE: A Web Application for Tracking SARS-CoV-2 Genomic Variation (2020) (165)
- Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020 (2020) (163)
- Origins and diversity of human immunodeficiency viruses (1994) (162)
- Identification of a highly divergent HIV type 2 and proposal for a change in HIV type 2 classification. (2004) (160)
- One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity. (2006) (160)
- Wild Mandrillus sphinx Are Carriers of Two Types of Lentivirus (2001) (146)
- Cataloguing the HIV type 1 human protein interaction network. (2008) (141)
- Molecular Epidemiology of Simian Immunodeficiency Virus SIVsm in U.S. Primate Centers Unravels the Origin of SIVmac and SIVstm (2005) (140)
- Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021) (2021) (140)
- The Molecular Population Genetics of HIV-1 Group O (2004) (138)
- Co-infections, secondary infections, and antimicrobial use in patients hospitalised with COVID-19 during the first pandemic wave from the ISARIC WHO CCP-UK study: a multicentre, prospective cohort study (2021) (136)
- Reduced neutralisation of the Delta (B.1.617.2) SARS-CoV-2 variant of concern following vaccination (2021) (134)
- Cross-species transmission and recombination of 'AIDS' viruses. (1995) (133)
- The hyper-transmissible SARS-CoV-2 Omicron variant exhibits significant antigenic change, vaccine escape and a switch in cell entry mechanism (2022) (132)
- An integrated view of molecular coevolution in protein-protein interactions. (2010) (130)
- SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway (2022) (130)
- SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway (2022) (130)
- Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen (2021) (125)
- Detection of low-frequency pretherapy chemokine (CXC motif) receptor 4 (CXCR4)-using HIV-1 with ultra-deep pyrosequencing (2009) (124)
- On the origins of the extracellular matrix in vertebrates. (2007) (124)
- The evolution of the vertebrate metzincins; insights from Ciona intestinalis and Danio rerio (2007) (118)
- The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages (2021) (116)
- An Isolate of Human Immunodeficiency Virus Type 1 Originally Classified as Subtype I Represents a Complex Mosaic Comprising Three Different Group M Subtypes (A, G, and I) (1998) (113)
- HIV-1 nomenclature proposal: a reference guide to HIV-1 classification. (2000) (112)
- Evolution and probable transmission of intersubtype recombinant human immunodeficiency virus type 1 in a Zambian couple (1997) (112)
- A plasmid DNA-launched SARS-CoV-2 reverse genetics system and coronavirus toolkit for COVID-19 research (2021) (111)
- Specificity in protein interactions and its relationship with sequence diversity and coevolution (2007) (109)
- Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic (2021) (108)
- Comparative Study of Adaptive Molecular Evolution in Different Human Immunodeficiency Virus Groups and Subtypes (2004) (104)
- The circulating SARS-CoV-2 spike variant N439K maintains fitness while evading antibody-mediated immunity (2020) (103)
- Evidence of two distinct subsubtypes within the HIV-1 subtype A radiation. (2001) (101)
- Origins and evolution of AIDS viruses. (1999) (99)
- Development and validation of the ISARIC 4C Deterioration model for adults hospitalised with COVID-19: a prospective cohort study (2021) (98)
- Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research (2020) (96)
- SIVagm Infection in Wild African Green Monkeys from South Africa: Epidemiology, Natural History, and Evolutionary Considerations (2013) (95)
- Risk of adverse outcomes in patients with underlying respiratory conditions admitted to hospital with COVID-19: a national, multicentre prospective cohort study using the ISARIC WHO Clinical Characterisation Protocol UK (2021) (94)
- Convergent evolution of gene networks by single‐gene duplications in higher eukaryotes (2004) (92)
- Use of Four Next-Generation Sequencing Platforms to Determine HIV-1 Coreceptor Tropism (2012) (91)
- HIV-host interactions: a map of viral perturbation of the host system. (2009) (91)
- The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic (2022) (89)
- Plasma RNA Viral Load in Human Immunodeficiency Virus Type 2 Subtype A and Subtype B Infections (2002) (87)
- Defining the Role of Essential Genes in Human Disease (2011) (87)
- The emergence and ongoing convergent evolution of the N501Y lineages coincides with a major global shift in the SARS-CoV-2 selective landscape (2021) (86)
- Molecular Mechanisms of Recombination Restriction in the Envelope Gene of the Human Immunodeficiency Virus (2009) (86)
- Variability of human immunodeficiency virus type 2 (hiv-2) infecting patients living in france. (2001) (84)
- The Evolutionary Analysis of Emerging Low Frequency HIV-1 CXCR4 Using Variants through Time—An Ultra-Deep Approach (2010) (83)
- Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant (2021) (82)
- Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland (2020) (82)
- Characterisation of in-hospital complications associated with COVID-19 using the ISARIC WHO Clinical Characterisation Protocol UK: a prospective, multicentre cohort study (2021) (77)
- No evidence for distinct types in the evolution of SARS-CoV-2 (2020) (77)
- A prenylated dsRNA sensor protects against severe COVID-19 (2021) (76)
- Phylogenetic characteristics of three new HIV-1 N strains and implications for the origin of group N (2004) (75)
- Challenges in the analysis of viral metagenomes (2016) (74)
- Phylogenetic analysis of 49 newly derived HIV-1 group O strains: high viral diversity but no group M-like subtype structure. (2002) (74)
- Exploring the Natural Origins of SARS-CoV-2 in the Light of Recombination (2021) (74)
- Factors Associated with Siman Immunodeficiency Virus Transmission in a Natural African Nonhuman Primate Host in the Wild (2014) (72)
- Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II (2012) (71)
- Identifying the Important HIV-1 Recombination Breakpoints (2008) (70)
- Predicting the mutational drivers of future SARS-CoV-2 variants of concern (2021) (69)
- Questioning the evidence for genetic recombination in the 1918 "Spanish flu" virus. (2002) (68)
- Sensitive Deep-Sequencing-Based HIV-1 Genotyping Assay To Simultaneously Determine Susceptibility to Protease, Reverse Transcriptase, Integrase, and Maturation Inhibitors, as Well as HIV-1 Coreceptor Tropism (2014) (64)
- Patterns of HIV-1 Protein Interaction Identify Perturbed Host-Cellular Subsystems (2010) (61)
- Kuru experiments triggered the emergence of pathogenic SIVmac. (2006) (60)
- Sequence determinants of breakpoint location during HIV-1 intersubtype recombination (2006) (60)
- Detection of neutralising antibodies to SARS-CoV-2 to determine population exposure in Scottish blood donors between March and May 2020 (2020) (60)
- Genomic reconstruction of the SARS-CoV-2 epidemic in England (2021) (59)
- Redefining the ancestral origins of the interleukin-1 superfamily (2018) (58)
- Detection and Partial Characterization of Simian Immunodeficiency Virus SIVsm Strains from Bush Meat Samples from Rural Sierra Leone (2005) (57)
- Characterization and Comparison of Recombinant Simian Immunodeficiency Virus from Drill (Mandrillus leucophaeus) and Mandrill (Mandrillus sphinx) Isolates (2003) (57)
- Changes in in-hospital mortality in the first wave of COVID-19: a multicentre prospective observational cohort study using the WHO Clinical Characterisation Protocol UK (2021) (56)
- The Evolution and Biology of SARS-CoV-2 Variants. (2022) (56)
- The integrins of the urochordate Ciona intestinalis provide novel insights into the molecular evolution of the vertebrate integrin family (2005) (51)
- Evidence of Recombination between Divergent Hepatitis E Viruses (2005) (50)
- The animal origin of SARS-CoV-2 (2021) (50)
- The characterisation of six ADAMTS proteases in the basal chordate Ciona intestinalis provides new insights into the vertebrate ADAMTS family. (2005) (50)
- Reconstruction of ancestral protein interaction networks for the bZIP transcription factors (2007) (49)
- COVID-19 symptoms at hospital admission vary with age and sex: results from the ISARIC prospective multinational observational study (2021) (49)
- The Collagens of Hydra Provide Insight into the Evolution of Metazoan Extracellular Matrices* (2007) (46)
- On the Origins of Mendelian Disease Genes in Man: The Impact of Gene Duplication (2011) (45)
- Gene Duplication and Environmental Adaptation within Yeast Populations (2010) (45)
- Understanding the diversification of HIV-1 groups M and O (2007) (45)
- A full-length and replication-competent proviral clone of SIVAGM from tantalus monkeys. (1997) (45)
- Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022) (2022) (44)
- A Survey of Bioinformatics Database and Software Usage through Mining the Literature (2016) (44)
- HIV-1 sequence subtype D in the United States. (1994) (44)
- Non-steroidal anti-inflammatory drug use and outcomes of COVID-19 in the ISARIC Clinical Characterisation Protocol UK cohort: a matched, prospective cohort study (2021) (42)
- Characterization of Protein-Protein Interaction Interfaces from a Single Species (2011) (42)
- Detection of SARS‐CoV‐2 in respiratory samples from cats in the UK associated with human‐to‐cat transmission (2021) (41)
- The distribution of HIV-1 recombination breakpoints. (2007) (40)
- Analysis of partial pol and env sequences indicates a high prevalence of HIV type 1 recombinant strains circulating in Gabon. (2002) (40)
- The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK (2022) (39)
- A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network (2007) (38)
- Intersubtype recombinant HIV-1 Sequences. (1997) (38)
- Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies (2021) (37)
- Updated proposal of reference sequences for the HIV-1 genetic subtypes. (1997) (36)
- Natural selection in the evolution of SARS-CoV-2 in bats, not humans, created a highly capable human pathogen (2020) (34)
- HIV type 1 genetic diversity and genotypic drug susceptibility in the Republic of Moldova. (2001) (33)
- Reduction/oxidation-phosphorylation control of DNA binding in the bZIP dimerization network (2006) (32)
- Protein Interactions from Complexes: A Structural Perspective (2006) (32)
- The biological context of HIV-1 host interactions reveals subtle insights into a system hijack (2010) (32)
- Evidence of significant natural selection in the evolution of SARS-CoV-2 in bats, not humans (2020) (32)
- Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function (2022) (32)
- Ebolavirus is evolving but not changing: No evidence for functional change in EBOV from 1976 to the 2014 outbreak (2015) (31)
- Back to basics – how the evolution of the extracellular matrix underpinned vertebrate evolution (2009) (30)
- Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database (2012) (29)
- bioNerDS: exploring bioinformatics’ database and software use through literature mining (2013) (29)
- The pain interactome: Connecting pain-specific protein interactions (2014) (29)
- Characterizing the Diverse Mutational Pathways Associated with R5-Tropic Maraviroc Resistance: HIV-1 That Uses the Drug-Bound CCR5 Coreceptor (2015) (29)
- Constraints on HIV-1 Diversity from Protein Structure (2010) (27)
- CTree: comparison of clusters between phylogenetic trees made easy (2007) (27)
- The Evolution of Protein Interaction Networks in Regulatory Proteins (2004) (26)
- A logical model of HIV-1 interactions with the T-cell activation signalling pathway (2015) (25)
- Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function (2022) (25)
- A Twin-track Approach Has Optimized Proton and Hydride Transfer by Dynamically Coupled Tunneling during the Evolution of Protochlorophyllide Oxidoreductase* (2011) (25)
- SARS-CoV-2 variant evasion of monoclonal antibodies based on in vitro studies (2022) (25)
- The Two-Phase Emergence of Non Pandemic HIV-1 Group O in Cameroon (2015) (24)
- Effect of dataset selection on the topological interpretation of protein interaction networks (2005) (24)
- Genomic epidemiology of SARS-CoV-2 spread in Scotland highlights the role of European travel in COVID-19 emergence (2020) (23)
- Using set theory to reduce redundancy in pathway sets (2018) (23)
- SARS-CoV-2 variant biology: immune escape, transmission and fitness (2023) (23)
- Predicting host taxonomic information from viral genomes: A comparison of feature representations (2020) (23)
- An Integrated Transcriptomic and Meta-Analysis of Hepatoma Cells Reveals Factors That Influence Susceptibility to HCV Infection (2011) (23)
- Methodology capture: discriminating between the "best" and the rest of community practice (2008) (22)
- Adeno-associated virus 2 infection in children with non-A-E hepatitis (2022) (20)
- “Hidden” dUTPase Sequence in Human Immunodeficiency Virus Type 1 gp120 (1999) (20)
- Integration of Large-Scale Genomic Data Sources With Evolutionary History Reveals Novel Genetic Loci for Congenital Heart Disease (2019) (20)
- Viral CpG Deficiency Provides No Evidence That Dogs Were Intermediate Hosts for SARS-CoV-2 (2020) (19)
- Sensitive Cell-Based Assay for Determination of Human Immunodeficiency Virus Type 1 Coreceptor Tropism (2013) (19)
- Interpreting Viral Deep Sequencing Data with GLUE (2019) (18)
- Respiratory disease in cats associated with human-to-cat transmission of SARS-CoV-2 in the UK (2020) (18)
- Differentiating between viruses and virus species by writing their names correctly (2022) (18)
- Constraints from protein structure and intra-molecular coevolution influence the fitness of HIV-1 recombinants. (2014) (17)
- HIV type 1 diversity in northeastern Romania in 200-2001 based on phylogenic analysis of pol sequences from patient failing antiretroviral therapy. (2003) (17)
- The value of open-source clinical science in pandemic response: lessons from ISARIC (2021) (17)
- Kindel: indel-aware consensus for nucleotide sequence alignments (2017) (16)
- Mapping biological process relationships and disease perturbations within a pathway network (2018) (15)
- Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway (2022) (15)
- Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems (2019) (15)
- Molecular Epidemiology of Simian T-Cell Lymphotropic Virus Type 1 in Wild and Captive Sooty Mangabeys (2005) (15)
- Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway (2022) (15)
- Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer (2022) (14)
- Disentangling the multigenic and pleiotropic nature of molecular function (2015) (14)
- Importance of patient bed pathways and length of stay differences in predicting COVID-19 hospital bed occupancy in England (2021) (14)
- Cataloging the biomedical world of pain through semi-automated curation of molecular interactions (2013) (13)
- Extracting patterns of database and software usage from the bioinformatics literature (2014) (12)
- Ambiguity and variability of database and software names in bioinformatics (2012) (12)
- Epidemic waves of COVID-19 in Scotland: a genomic perspective on the impact of the introduction and relaxation of lockdown on SARS-CoV-2 (2021) (12)
- Generation and transmission of inter-lineage recombinants in the SARS-CoV-2 pandemic (2021) (12)
- T-RECs: rapid and large-scale detection of recombination events among different evolutionary lineages of viral genomes (2017) (12)
- Modular Biological Function Is Most Effectively Captured by Combining Molecular Interaction Data Types (2013) (12)
- Recombination and diversity of HIV: Implications for vaccine development. (1995) (11)
- Recurrent independent emergence and transmission of SARS-CoV-2 Spike amino acid H69/V70 deletions (2021) (11)
- Alternative splicing and protein interaction data sets (2013) (11)
- JNets: Exploring networks by integrating annotation (2009) (11)
- A signal processing method for alignment-free metagenomic binning: multi-resolution genomic binary patterns (2019) (11)
- The antiviral state has shaped the CpG composition of the vertebrate interferome to avoid self-targeting (2021) (10)
- Evolution in protein interaction networks: co-evolution, rewiring and the role of duplication. (2009) (10)
- Implementation of corticosteroids in treatment of COVID-19 in the ISARIC WHO Clinical Characterisation Protocol UK: prospective, cohort study (2022) (10)
- Clonal analysis of HIV-1 genotype and function associated with virologic failure in treatment-experienced persons receiving maraviroc: Results from the MOTIVATE phase 3 randomized, placebo-controlled trials (2018) (10)
- Locus heterogeneity disease genes encode proteins with high interconnectivity in the human protein interaction network (2014) (9)
- Genetic epidemiology of SARS-CoV-2 transmission in renal dialysis units – A high risk community-hospital interface (2021) (9)
- Full-Text Mining: Linking Practice, Protocols and Articles in Biological Research (2008) (9)
- A link between SIVsm in sooty mangabeys (SM) in wild-living monkeys in Sierra Leone and SIVsm in an American-based SM colony. (2004) (8)
- The Role of Protein Interactions in Mediating Essentiality and Synthetic Lethality (2013) (8)
- Binding interface change and cryptic variation in the evolution of protein-protein interactions (2016) (8)
- Pervasive and non-random recombination in near full-length HIV genomes from Uganda (2020) (8)
- Intersubtype recombination in HIV-1 and HIV-2 (1995) (8)
- Distinct clinical symptom patterns in patients hospitalised with COVID-19 in an analysis of 59,011 patients in the ISARIC-4C study (2022) (7)
- Bioinformatics Meets Virology: The European Virus Bioinformatics Center’s Second Annual Meeting (2018) (7)
- The origins of the evolutionary signal used to predict protein-protein interactions (2012) (7)
- Protein structural disorder of the envelope V3 loop contributes to the switch in human immunodeficiency virus type 1 cell tropism (2017) (7)
- Adaptive HIV-1 evolutionary trajectories are constrained by protein stability (2017) (7)
- An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network (2007) (7)
- Conserved recombination patterns across coronavirus subgenera (2021) (7)
- Using knowledge of protein structural constraints to predict the evolution of HIV-1. (2011) (6)
- Phylogenetic relationships of methionine aminopeptidase 2 among Encephalitozoon species and genotypes of microsporidia. (2005) (6)
- Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission (2022) (5)
- The utility of different bioinformatics algorithms for genotypic HIV-1 tropism testing in a large clinical cohort with multiple subtypes (2014) (5)
- The Third Annual Meeting of the European Virus Bioinformatics Center (2019) (5)
- Ebola virus is evolving but not changing: no evidence for functional change in EBOV from 1976 to the 2014 outbreak (2015) (5)
- Effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control for hospital-onset COVID-19 infection: Multicentre, prospective study (2022) (5)
- Alignment by the numbers: sequence assembly using reduced dimensionality numerical representations (2014) (5)
- Four principles to establish a universal virus taxonomy (2023) (5)
- Local binary patterns as a feature descriptor in alignment-free visualisation of metagenomic data (2016) (5)
- Emergence, dominance, and possible decline of CXCR4 chemokine receptor usage during the course of HIV infection (2010) (5)
- Evolutionary remodelling of N‐terminal domain loops fine‐tunes SARS‐CoV‐2 spike (2022) (4)
- Increased resolution of African swine fever virus genome patterns based on profile HMMs of protein domains (2020) (4)
- How One Pandemic Led To Another: Was African Swine Fever Virus (ASFV) The Disruption Contributing To Severe Acute Respiratory Syndrome Coronavirus 2 (Sars‑cov‑2) Emergence? (2022) (4)
- Meta-analysis of virus-induced host gene expression reveals unique signatures of immune dysregulation induced by SARS-CoV-2 (2020) (4)
- Ancestry of the AUTS2 family–A novel group of polycomb-complex proteins involved in human neurological disease (2020) (3)
- Evolvability of yeast protein-protein interaction interfaces. (2012) (3)
- Network controllability: viruses are driver agents in dynamic molecular systems (2018) (3)
- Inference and Applications of Molecular Phylogenies: An Introductory Guide (2004) (3)
- Evaluating the effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control teams: the COG-UK hospital-onset COVID-19 infection study (2022) (3)
- Investigation of Salmonella Phage–Bacteria Infection Profiles: Network Structure Reveals a Gradient of Target-Range from Generalist to Specialist Phage Clones in Nested Subsets (2021) (2)
- Quantifying and Cataloguing Unknown Sequences within Human Microbiomes (2021) (2)
- Send cat and dog samples to test for SARS-CoV-2 (2020) (2)
- ITN—VIROINF: Understanding (Harmful) Virus-Host Interactions by Linking Virology and Bioinformatics (2021) (2)
- The evolution of protein interaction networks in regulatory proteins: Conference Reviews (2004) (2)
- What is bioinformatics made from? A survey of database and software usage through full-text mining (2013) (2)
- Unique protein features of SARS-CoV-2 relative to other Sarbecoviruses (2021) (2)
- Inconsistent directions of change in case severity across successive SARS-CoV-2 variant waves suggests an unpredictable future (2022) (2)
- Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning (2022) (1)
- bioNerDS: exploring bioinformatics’ database and software use through literature mining (2013) (1)
- Marginalised stack denoising autoencoders for metagenomic data binning (2017) (1)
- Identification of important amino acid replacements in the 2013-2016 Ebola virus outbreak (2016) (1)
- Ambiguity and variability of database and software names in bioinformatics (2015) (1)
- Similarity in expression accounts for correlated evolution of interacting proteins (2007) (1)
- Increased resolution of African Swine Fever Virus genome patterns based on profile HMM protein domains (2020) (1)
- Publisher Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland (2021) (1)
- HIV-1 group P infection: towards a dead-end infection? (2018) (1)
- Respiratory support in patients with severe COVID-19 in the International Severe Acute Respiratory and Emerging Infection (ISARIC) COVID-19 study: a prospective, multinational, observational study (2022) (1)
- Symptom‐based case definitions for COVID‐19: Time and geographical variations for detection at hospital admission among 260,000 patients (2022) (1)
- Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning (2022) (1)
- The Utility of Data Transformation for Alignment, De Novo Assembly and Classification of Short Read Virus Sequences (2019) (1)
- Recombination of HIV Genomes. (1998) (1)
- Human genetic disease is greatly influenced by the underlying fragility of evolutionarily ancient genes (2019) (1)
- Nucleotide, Protein Evidence of two distinc subsubtypes within the HIV-1 subtype A radiation (2001) (1)
- Using Molecular Visualisation Techniques to Explain the Molecular Biology of SARS-CoV-2 Spike Protein Mutations to a General Audience. (2022) (1)
- The apparent interferon resistance of transmitted HIV-1 is possibly a consequence of enhanced replicative fitness (2022) (1)
- De novo assembly of nucleotide sequences in a compressed feature space (2017) (1)
- Mapping biological process relationships and disease perturbations within a pathway network (2017) (1)
- Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes (2023) (1)
- The SARS-CoV-2 Alpha variant is associated with increased clinical severity of disease (2021) (1)
- Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II (2012) (1)
- SHARKview: a tool for the visualization of systems biology data (2007) (1)
- Publisher Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland (2021) (0)
- In silico prediction of HIV-1-host molecular interactions and their directionality (2022) (0)
- ISARIC-COVID-19 dataset: A Prospective, Standardized, Global Dataset of Patients Hospitalized with COVID-19 (2022) (0)
- The SARS-CoV-2 Spike Protein Mutation Explorer: Using an Interactive Application to Improve the Public Understanding of SARS-CoV-2 Variants of Concern (2022) (0)
- The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: A genomics-based retrospective cohort analysis (2023) (0)
- Metagenomic Binning through Multi-resolution Genomic Binary Patterns (2016) (0)
- Binding interface change and cryptic variation in the evolution of protein-protein interactions (2016) (0)
- INSULIN SENSITIZING THERAPY COMPARED TO INSULIN PROVIDING THERAPY FOR TYPE 2 DIABETES MELLITUS: EFFECTS ON LOW DENSITY LIPOPROTEIN PARTICLE CHARACTERISTICS BY NUCLEAR MAGNETIC RESONANCE LIPOPROFILE-III (2010) (0)
- Submitted to MBE, for consideration as a Letter Viral CpG deficiency provides no evidence that dogs were intermediate hosts for SARS-CoV-2 (2020) (0)
- Quantitative deep sequencing and HIV-1 population dynamics (2010) (0)
- Author Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland (2020) (0)
- The origins of the evolutionary signal used to predict protein-protein interactions (2012) (0)
- SARS-CoV-2 evolution during treatment of chronic infection (2021) (0)
- Virus taxonomy and the role of the International Committee on Taxonomy of Viruses (ICTV). (2023) (0)
- Publisher Correction: Genomic reconstruction of the SARS CoV-2 epidemic in England (2022) (0)
- Defining the Characteristics of Type I Interferon Stimulated Genes: Insight from Expression Data and Machine Learning (2021) (0)
- The P323L substitution in the SARS-CoV-2 polymerase (NSP12) confers a selective advantage during infection (2023) (0)
- Essentiality of proteins on the basis of their membership of protein complexes (2011) (0)
- The Interferon Resistance of Transmitted HIV-1 is a Consequence of Enhanced Replicative Fitness (2021) (0)
- On the Origins of Mendelian Disease Genes in Man: The Impact of Gene Duplication (2012) (0)
- T-RECs: rapid and large-scale detection of recombination events among different evolutionary lineages of viral genomes (2017) (0)
- Defining the characteristics of interferon-alpha–stimulated human genes: insight from expression data and machine learning (2022) (0)
- Correction to: The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK (2022) (0)
- Prediction of virus-host association using protein language models and multiple instance learning (2023) (0)
- Redefining the ancestral origins of the interleukin-1 superfamily (2018) (0)
- Comparative Study of Adaptive Molecular Evolution in Different Human Immunodeficiency Virus Groups and Subtypes (2004) (0)
- A signal processing method for alignment-free metagenomic binning: multi-resolution genomic binary patterns (2019) (0)
- SARS-CoV-2’s evolutionary capacity is mostly driven by host antiviral molecules (2023) (0)
- Specificity and redundancy in protein-protein interaction interfaces (2011) (0)
- Edinburgh Research Explorer A comprehensive panel of near-full-length clones and reference sequences for non-subtype B isolates of human immunodeficiency virus type 1 (1998) (0)
- An image processing method for metagenomic binning: multi-resolution genomic binary patterns (2017) (0)
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