David States
#23,818
Most Influential Person Now
American biophysicist
David States's AcademicInfluence.com Rankings
David Statesphysics Degrees
Physics
#2636
World Rank
#3858
Historical Rank
Biophysics
#89
World Rank
#95
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Physics
David States's Degrees
- PhD Biophysics Stanford University
- Masters Physics Stanford University
- Bachelors Physics Stanford University
Why Is David States Influential?
(Suggest an Edit or Addition)According to Wikipedia, David J. States is an American biophysicist who is Professor of Human Genetics at the University of Michigan. His research group is using computational methods to understand the human genome and how it relates to the human proteome. He is the Director of the Michigan NIH Bioinformatics Training Progra] and a Senior Scientist in the National Center for Integrative Biomedical Informatics.
David States's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- CHARMM: A program for macromolecular energy, minimization, and dynamics calculations (1983) (13081)
- A two-dimensional nuclear overhauser experiment with pure absorption phase in four quadrants☆ (1982) (2395)
- Identification of protein coding regions by database similarity search (1993) (1651)
- Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly‐available database (2005) (766)
- PRIDE: The proteomics identifications database (2005) (547)
- Gene structure prediction and alternative splicing analysis using genomically aligned ESTs. (2001) (430)
- Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study (2006) (309)
- SAGA: a subgraph matching tool for biological graphs (2007) (258)
- GLay: community structure analysis of biological networks (2010) (229)
- Similarities in amino acid sequences of Aplysia ADP-ribosyl cyclase and human lymphocyte antigen CD38. (1992) (227)
- The alpha 1-antitrypsin gene and its mutations. Clinical consequences and strategies for therapy. (1989) (222)
- Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments. (2006) (213)
- Blind men and elephants: What do citation summaries tell us about a research article? (2008) (206)
- Selecting for functional alternative splices in ESTs. (2002) (199)
- Systematic comparison of the human saliva and plasma proteomes (2009) (194)
- Ancient conserved regions in new gene sequences and the protein databases. (1993) (169)
- Improved Sensitivity of Nucleic Acid Database Searches Using Application-Specific Scoring Matrices (1991) (166)
- Human Proteinpedia enables sharing of human protein data (2008) (164)
- Information Enhancement Methods for Large Scale Sequence Analysis (1993) (141)
- Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together (2006) (140)
- Integrating and annotating the interactome using the MiMI plugin for cytoscape (2009) (137)
- Structure of the human neutrophil elastase gene. (1988) (134)
- Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics (2006) (130)
- QGB: Combined Use of Sequence Similarity and Codon Bias for Coding Region Identification (1994) (128)
- X chromosome map at 75-kb STS resolution, revealing extremes of recombination and GC content. (1997) (124)
- Michigan molecular interactions r2: from interacting proteins to pathways (2008) (108)
- SciMiner: web-based literature mining tool for target identification and functional enrichment analysis (2009) (95)
- CLO: The cell line ontology (2014) (91)
- Deconvoluting the intestine: molecular evidence for a major role of the mesenchyme in the modulation of signaling cross talk. (2007) (90)
- Both Src-Dependent and -Independent Mechanisms Mediate Phosphatidylinositol 3-Kinase Regulation of Colony-Stimulating Factor 1-Activated Mitogen-Activated Protein Kinases in Myeloid Progenitors (2000) (90)
- Conformations of intermediates in the folding of the pancreatic trypsin inhibitor. (1987) (85)
- Identification of novel alternative splice isoforms of circulating proteins in a mouse model of human pancreatic cancer. (2009) (78)
- A Dominant Function of IKK/NF-κB Signaling in Global Lipopolysaccharide-induced Gene Expression* (2006) (78)
- Electrostatic effects and hydrogen exchange behaviour in proteins. The pH dependence of exchange rates in lysozyme. (1987) (67)
- Consensus promoter identification in the human genome utilizing expressed gene markers and gene modeling. (2002) (61)
- Data management and preliminary data analysis in the pilot phase of the HUPO Plasma Proteome Project (2005) (57)
- A new two-disulphide intermediate in the refolding of reduced bovine pancreatic trypsin inhibitor. (1984) (55)
- Profiles of Growth Hormone (GH)-regulated Genes Reveal Time-dependent Responses and Identify a Mechanism for Regulation of Activating Transcription Factor 3 By GH* (2006) (52)
- Computationally Identifying Novel NF-κB-Regulated Immune Genes in the Human Genome (2003) (50)
- Molecular sequence accuracy and the analysis of protein coding regions. (1991) (48)
- On the Treatment of Electrostatic Interactions in Biomolecular Simulations (1991) (47)
- The Repeat Pattern Toolkit (RPT): Analyzing the Structure and Evolution of the C. elegans Genome (1994) (45)
- MiSearch adaptive pubMed search tool (2008) (43)
- Conformational model for binding site recognition by the E.coli MetJ transcription factor (2001) (43)
- Comparative accuracy of methods for protein sequence similarity search (1998) (43)
- Inferring Time-Varying Network Topologies from Gene Expression Data (2007) (43)
- Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extraction (2005) (42)
- Colony-stimulating factor-1 requires PI3-kinase-mediated metabolism for proliferation and survival in myeloid cells (2006) (41)
- Computationally identifying novel NF-kappa B-regulated immune genes in the human genome. (2003) (38)
- Faculty Opinions recommendation of GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis. (2002) (38)
- Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function (2007) (36)
- Linear discriminant analysis-based estimation of the false discovery rate for phosphopeptide identifications. (2008) (36)
- Literature-based discovery of diabetes- and ROS-related targets (2010) (34)
- A bioinformatics analysis of the cell line nomenclature (2008) (34)
- Similarity and Homology (1991) (34)
- Inference of Biologically Relevant Gene Influence Networks Using the Directed Information Criterion (2006) (33)
- Using directed information to build biologically relevant influence networks. (2007) (33)
- Compact Encoding Strategies for DNA Sequence Similarity Search (1996) (32)
- Mega-Classification: Discovering Motifs in Massive Datastreams (1992) (32)
- Metab2MeSH: annotating compounds with medical subject headings (2012) (31)
- Computational and functional analysis of growth hormone (GH)-regulated genes identifies the transcriptional repressor B-cell lymphoma 6 (Bc16) as a participant in GH-regulated transcription. (2009) (31)
- Dynamic filtering by two-dimensional 1H NMR with application to phage lambda repressor. (1984) (29)
- Motif Discovery in Tissue-Specific Regulatory Sequences Using Directed Information (2007) (29)
- A model for electrostatic effects in proteins (1987) (28)
- A Bayesian Evolutionary Distance for Parametrically Aligned Sequences (1996) (25)
- A Cheminformatic Toolkit for Mining Biomedical Knowledge (2007) (25)
- Molecular sequence accuracy: analysing imperfect data. (1992) (25)
- Computationally Efficient Cluster Representation in Molecular Sequence Megaclassification (1993) (25)
- A mouse plasma peptide atlas as a resource for disease proteomics (2008) (23)
- A conformational isomer of bovine pancreatic trypsin inhibitor protein produced by refolding (1980) (21)
- Bayesian classification of protein structure (1992) (21)
- Comparison of whole genome assemblies of the human genome. (2002) (21)
- The pathology and pathogenesis of injuries caused by lateral impact accidents (1968) (21)
- Using Directed Information to Build Biologically Relevant Influence Networks (2007) (21)
- Supplementary data need to be kept in public repositories (2005) (20)
- A method to determine the filter matrix in four‐dye fluorescence‐based DNA sequencing (1997) (19)
- Cytoscape ESP: simple search of complex biological networks (2008) (18)
- UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences (2000) (18)
- Efficient Classification of Massive, Unsegmented Datastreams (1992) (15)
- Applying Bayesian classification to protein structure (1991) (13)
- Erratum: Computational Proteomics Analysis System (CPAS): An extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments (Journal of Proteome Research (2006) 5 (112-121)) (2006) (13)
- Lane tracking software for four-color fluorescence-based electrophoretic gel images. (1996) (12)
- The Human Plasma and Serum Proteome (2007) (11)
- Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis (1998) (10)
- Bayesian classification of protein structural elements (1991) (9)
- Computational Detection of CpG Islands in DNA (1997) (9)
- The Cell Line Ontology and its use in tagging cell line names in biomedical text. (2007) (8)
- Filter matrix estimation in automated DNA sequencing (1998) (7)
- Bioinformatics code must enforce citation (2002) (7)
- Evolutionary-conserved gene expression response profiles across mammalian tissues. (2007) (7)
- Compositional Analysis of Homogeneous Regions in Human Genomic DNA (2002) (5)
- A structure based similarity measure for nucleic acid sequence comparison (1998) (5)
- Assembly and Analysis of Extended Human Genomic Contig Regions (1999) (4)
- Identity by Descent Genome Segmentation Based on Single Nucleotide Polymorphism Distributions (1999) (4)
- Simplifying access to a Clinical Data Repository using schema summarization. (2007) (3)
- Using directed information for influence discovery in interconnected dynamical systems (2008) (3)
- Data Standardization and Integration in Collaborative Proteomics Studies (2005) (2)
- Describing the Release of Sequence Data (2001) (2)
- Time to defend what we have won (2001) (2)
- Estimation of allele frequencies from color-multiplexed electropherograms (1998) (2)
- Sequence Assembly Validation by Restriction Digest Fingerprint Comparison (1997) (2)
- Manifold embedding for understanding mechanisms of transcriptional regulation (2006) (2)
- Coronary thrombosis in non-Q-wave myocardial infarction. (1987) (1)
- Understanding Distal transcriptional Regulation from Sequence, Expression and interactome Perspectives (2010) (1)
- Identifying Novel Blood Proteins and Protein Isoforms Using Tandem Mass Spectra. (2006) (1)
- Faculty of 1000 evaluation for Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome. (2012) (1)
- CLO: The cell line ontology (2014) (1)
- PRIDE: The proteomics identifications database (vol. 5, Issue 13, pp. 3537‐3545) (1)
- Calculating the secrets of life (1997) (1)
- Pilot Phase Results of the Human Proteome Organization Plasma Proteome Project. (2004) (1)
- Sensitive Detection of Distant Protein Relationships Using Hidden Markov Model Alignment (2007) (1)
- Probabilistic approaches to the use of higher order clone relationships in physical map assembly (2001) (1)
- Isochore Boundary locations based on total percent of all fragments (2002) (0)
- Machine Learning Techniques for Establishing the Provenance of Biological Interactions (2005) (0)
- Understanding Transcriptional Regulation Using De-novo Sequence Motif Discovery, Network Inference and Interactome Data (2007) (0)
- Directed-Information Based Feature-Selection for Tissue-Specific Sequences (2007) (0)
- Chapter 6 - Classification-based molecular sequence analysis (1998) (0)
- Session 19: Plasma Proteomics I (2004) (0)
- Assembly and compositional analysis of human genomic data (2002) (0)
- ISMB 2005 Organization (2005) (0)
- Faculty Opinions recommendation of Global variation in copy number in the human genome. (2006) (0)
- DepartmentofMolecularandCellularBiochemistry,OhioStateUniversity,Columbus,Ohio43210 (2006) (0)
- Systematic Definition and Evolutionary Analsis of Macrophage Genes: Evidence for Novel Host Defense Genes. (2007) (0)
- Faculty of 1000 evaluation for Global variation in copy number in the human genome. (2012) (0)
- Probabilistic data integration and visualization for understanding transcriptional regulation (2006) (0)
- Understanding Distal Transcriptional Regulation from Sequence Motif, Network Inference and Interactome Perspectives (2008) (0)
- Conference: Intelligent Systems for Molecular Biology. Final report (1999) (0)
- Faculty of 1000 evaluation for Predictive identification of exonic splicing enhancers in human genes. (2012) (0)
- mining MiSearch adaptive pubMed search tool (2009) (0)
- Faculty Opinions recommendation of MicroRNAs modulate hematopoietic lineage differentiation. (2004) (0)
- Abstract 5119: Quantitative proteomics of myeloid cells reveal upregulation of the Fc receptor and integrin pathways in a mouse ovarian cancer model (2011) (0)
- Faculty Opinions recommendation of Water properties from first principles: simulations by a general-purpose quantum mechanical polarizable force field. (2006) (0)
- Finding Sequence Features in Tissue-specific Sequences (2007) (0)
- Computational Prediction of c-MYC Binding and Action by Integration of Multiple Data Sources. (2006) (0)
- The implications of errors in molecular sequence data (2001) (0)
- ISMB-96 : proceedings : Forth International Conference on Intelligent Systems for Molecular Biology (1996) (0)
- Faculty Opinions recommendation of A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome. (2009) (0)
- Motifs in Biology: Analysis of Ambiguous Data: Introduction (1994) (0)
- Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, St. Louis, MO, USA, June 12-15 1996 (1996) (0)
- Essential Role of Gab2 in CSF-1 Dependent Macrophage Development in the Bone Marrow. (2007) (0)
- Data and text mining MiSearch adaptive pubMed search tool (2009) (0)
- Analysis and Annotation of Nucleic Acid Sequence (1998) (0)
- Faculty of 1000 evaluation for MicroRNAs modulate hematopoietic lineage differentiation. (2004) (0)
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