David W. Kennedy
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David W. Kennedyengineering Degrees
Engineering
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#10543
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Electrical Engineering
#2798
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#2941
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David W. Kennedycomputer-science Degrees
Computer Science
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#13030
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Computational Linguistics
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#3105
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Machine Learning
#5607
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#5682
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Artificial Intelligence
#6053
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#6146
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Engineering Computer Science
David W. Kennedy's Degrees
- PhD Computer Science Stanford University
- Masters Electrical Engineering University of California, Berkeley
- Bachelors Computer Engineering University of California, Berkeley
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(Suggest an Edit or Addition)David W. Kennedy's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms. (2006) (1629)
- Quantifying community assembly processes and identifying features that impose them (2013) (921)
- BIOGENIC IRON MINERALIZATION ACCOMPANYING THE DISSIMILATORY REDUCTION OF HYDROUS FERRIC OXIDE BY A GROUNDWATER BACTERIUM (1998) (705)
- Bacterial reduction of crystalline Fe3+ oxides in single phase suspensions and subsurface materials (1998) (348)
- c-Type Cytochrome-Dependent Formation of U(IV) Nanoparticles by Shewanella oneidensis (2006) (337)
- Reduction of U(VI) in goethite (α-FeOOH) suspensions by a dissimilatory metal-reducing bacterium (2000) (330)
- Geomicrobiology of High-Level Nuclear Waste-Contaminated Vadose Sediments at the Hanford Site, Washington State (2004) (298)
- Dechlorination of Carbon Tetrachloride by Fe(II) Associated with Goethite (2000) (284)
- Inhibition of bacterial U(VI) reduction by calcium. (2003) (265)
- Dissimilatory Reduction of Fe(III) and Other Electron Acceptors by a Thermus Isolate (1999) (250)
- Isolation of a High-Affinity Functional Protein Complex between OmcA and MtrC: Two Outer Membrane Decaheme c-Type Cytochromes of Shewanella oneidensis MR-1 (2006) (238)
- Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover (2015) (234)
- Reduction of TcO4- by sediment-associated biogenic Fe(II) (2004) (192)
- Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov. (1997) (185)
- Influence of Mn oxides on the reduction of uranium(VI) by the metal-reducing bacterium Shewanella putrefaciens (2002) (174)
- Bioreduction of hematite nanoparticles by the dissimilatory iron reducing bacterium Shewanella oneidensis MR-1 (2009) (173)
- Mineral transformations associated with the microbial reduction of magnetite (2000) (171)
- Biotransformation of two-line silica-ferrihydrite by a dissimilatory Fe(III)-reducing bacterium: Formation of carbonate green rust in the presence of phosphate (2004) (165)
- A trans-outer membrane porin-cytochrome protein complex for extracellular electron transfer by Geobacter sulfurreducens PCA (2014) (144)
- Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1 (2012) (139)
- Contribution of extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms to U(VI) immobilization. (2011) (136)
- Comparative biodegradation of alkyl halide insecticides by the white rot fungus, Phanerochaete chrysosporium (BKM-F-1767) (1990) (134)
- Microbial Reduction of Structural Fe(III) in Illite and Goethite (2003) (134)
- Direct Involvement of Type II Secretion System in Extracellular Translocation of Shewanella oneidensis Outer Membrane Cytochromes MtrC and OmcA (2008) (132)
- Extracellular Reduction of Hexavalent Chromium by Cytochromes MtrC and OmcA of Shewanella oneidensis MR-1 (2011) (130)
- Metal Reduction and Iron Biomineralization by a Psychrotolerant Fe(III)-Reducing Bacterium, Shewanella sp. Strain PV-4 (2006) (121)
- Deterministic influences exceed dispersal effects on hydrologically‐connected microbiomes (2017) (109)
- Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site. (2012) (107)
- Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology (2018) (95)
- Role of outer‐membrane cytochromes MtrC and OmcA in the biomineralization of ferrihydrite by Shewanella oneidensis MR‐1 (2010) (88)
- Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms (Proceedings of the National Academy of Sciences of the United States of America (2006) 103, 30, (11358-11363) DOI 10.1073/pnas.0604517103) (2009) (87)
- Hydrogenase- and outer membrane c-type cytochrome-facilitated reduction of technetium(VII) by Shewanella oneidensis MR-1. (2007) (85)
- Impacts of Shewanella oneidensis c‐type cytochromes on aerobic and anaerobic respiration (2010) (81)
- Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism (2016) (81)
- Letter: Ferrous hydroxy carbonate is a stable transformation product of biogenic magnetite (2005) (80)
- Reductive biotransformation of Fe in shale-limestone saprolite containing Fe(III) oxides and Fe(II)/Fe(III) phyllosilicates (2006) (77)
- Redox reactions of reduced flavin mononucleotide (FMN), riboflavin (RBF), and anthraquinone-2,6-disulfonate (AQDS) with ferrihydrite and lepidocrocite. (2012) (74)
- Modeling the Inhibition of the Bacterial Reduction of U(VI) by β-MnO2(s) (2002) (71)
- Oxidative Dissolution Potential of Biogenic and Abiogenic TcO2 in Subsurface Sediments (2009) (58)
- Electron donor-dependent radionuclide reduction and nanoparticle formation by Anaeromyxobacter dehalogenans strain 2CP-C. (2009) (52)
- Competitive reduction of pertechnetate (99TcO4-) by dissimilatory metal reducing bacteria and biogenic Fe(II). (2011) (52)
- Structural similarities between biogenic uraninites produced by phylogenetically and metabolically diverse bacteria. (2009) (52)
- Oxidative remobilization of biogenic uranium(IV) precipitates: effects of iron(II) and pH. (2005) (48)
- Distribution of Microbial Biomass and Potential for Anaerobic Respiration in Hanford Site 300 Area Subsurface Sediment (2011) (44)
- Dispersal limitation and thermodynamic constraints govern spatial structure of permafrost microbial communities. (2018) (43)
- Fe-phyllosilicate redox cycling organisms from a redox transition zone in Hanford 300 Area sediments (2013) (41)
- Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone. (2018) (40)
- Carbon Inputs From Riparian Vegetation Limit Oxidation of Physically Bound Organic Carbon Via Biochemical and Thermodynamic Processes (2017) (37)
- The mineralogic transformation of ferrihydrite induced by heterogeneous reaction with bioreduced anthraquinone disulfonate (AQDS) and the role of phosphate (2011) (33)
- Microbial reductive transformation of phyllosilicate Fe(III) and U(VI) in fluvial subsurface sediments. (2012) (33)
- Nitrate bioreduction in redox-variable low permeability sediments. (2016) (33)
- Manganese sulfide formation via concomitant microbial manganese oxide and thiosulfate reduction. (2011) (33)
- Influence of sediment bioreduction and reoxidation on uranium sorption. (2005) (33)
- Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies (2017) (30)
- Identification and Characterization of UndAHRCR-6, an Outer Membrane Endecaheme c-Type Cytochrome of Shewanella sp. Strain HRCR-6 (2011) (26)
- The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression (2007) (26)
- Biogeochemical cycling at the aquatic–terrestrial interface is linked to parafluvial hyporheic zone inundation history (2017) (24)
- Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies (2016) (23)
- Ferrous phosphate surface precipitates resulting from the reduction of intragrain 6-line ferrihydrite by Shewanella oneidensis MR-1 (2010) (23)
- Colonization Habitat Controls Biomass, Composition, and Metabolic Activity of Attached Microbial Communities in the Columbia River Hyporheic Corridor (2017) (17)
- The Comparative Risks of Bacterial Contamination between a Venturi Atomizer and a Positive Displacement Atomizer (2002) (14)
- Ca-UO2-CO3 complexation – implications for bioremediation of U(VI) (2005) (13)
- Redox transformation and reductive immobilization of Cr(VI) in the Columbia River hyporheic zone sediments (2017) (12)
- The Role of Bacterial Exopolymers in Metal Sorption and Reduction (2005) (11)
- Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer. (2014) (8)
- Distinct temporal diversity profiles for nitrogen cycling genes in a hyporheic microbiome (2020) (7)
- Carbon inputs from riparian vegetation limit oxidation of physically-bound organic carbon via biochemical and thermodynamic processes (2017) (6)
- TEM Study of Manganese Biosorption by Cyanobacterium Synechocystis 6803 (2006) (6)
- Multi ‘omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone (2018) (5)
- Modeling the inhibition of the bacteral reduction of U(VI) by beta-MnO2(s). (2002) (4)
- Publisher Correction: Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology (2018) (4)
- Mineral transformation associated with the microbial reductionof magnetite (2000) (3)
- Correction for Lygeros et al., Stochastic hybrid modeling of DNA replication across a complete genome (2009) (3)
- Dispersal limitation and thermodynamic constraints govern spatial structure of permafrost microbial communities (2018) (3)
- Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer. (2014) (3)
- High-Throughput 3D Visualization of Large Volumes at High Resolution by 3ViewTM (2010) (3)
- Biogenic Mineral Formation by Iron Reducing Bacteria (2001) (2)
- Microbial Diversity and Biogeochemical Function of the Phototrophic Microbial Mats of Epsomitic Hot Lake, WA (2012) (2)
- Carbon cycling at the aquatic-terrestrial interface is linked to parafluvial hyporheic zone inundation history (2017) (2)
- Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes (2017) (1)
- Correction for Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other micro-organisms (2009) (1)
- Temporal dynamics of nitrogen cycle gene diversity in a hyporheic microbiome (2019) (1)
- Riparian vegetation limits oxidation of thermodynamically unfavorable bound-carbon stocks along an aquatic interface (2017) (1)
- Deterministic assembly processes govern seasonal and spatial variation in microbiomes across hydrologically-connected hyporheic zones (2016) (1)
- Multi `omics reveals role of phenotypic plasticity in governing biogeochemical hotspots within the groundwater-surface water (hyporheic) mixing zone (2017) (0)
- Permafrost soil characteristics and microbial community structure across a boreal forest watershed vary over short spatial scales and dictate community responses to thaw. (2017) (0)
- Coupling spatiotemporal community assembly processes to ecosystem function (2016) (0)
- High-Resolution Imaging to Characterize the Structure and Biogeochemical Function of Microbial Biofilms (2011) (0)
- Ca-UO{sub 2}-CO{sub 3} complexation - implications for bioremediation of U(VI). (2003) (0)
- Influence of Sediment Bioreductionand Reoxidation on UraniumSorption (2005) (0)
- Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology (2018) (0)
- TEM Approach in Investigations of Microbially Assisted Uranium Reduction (2002) (0)
- Advances in Electron Microscopy for Studying the Microorganism-mediated Reduction of Radionuclides in the Subsurface (2009) (0)
- Coupled Spatiotemporal Dynamics of Microbial Community Ecology, Biogeochemistry, and Hydrologic Mixing (2015) (0)
- Biogeochemistry of Fe and Tc Reduction and Oxidation in FRC Sediment (2004) (0)
- Supplemental Table 3 (2016) (0)
- Publisher Correction: Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology (2018) (0)
- Phanerochaete chrysosporium (BKM-F-1767). insecticides by the white rot fungus, Comparative biodegradation of alkyl halide (2013) (0)
- Exploring the Fuel Flexibility of Microbial Fuel Cells (2006) (0)
- Riparian carbon inputs and sediment metabolomes, but not metagenomes or metaproteomes, correspond to enhanced water-soluble C oxidation and bound C protection in the hyporheic zone (2018) (0)
- Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies (2017) (0)
- Carbon and Nitrogen Response to Forced Inundation of Hyporheic Sediment along an Elevational Transect of the Columbia River (2016) (0)
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