Dirk Gevers
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Dirk Geversengineering Degrees
Engineering
#7002
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#8360
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Biomedical Engineering
#667
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#679
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Applied Physics
#2349
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#2390
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Dirk Geversbiology Degrees
Biology
#12861
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#16365
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Bioinformatics
#156
World Rank
#158
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Biotechnology
#228
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#230
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Computational Biology
#285
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#286
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Engineering Biology
Dirk Gevers's Degrees
- PhD Biomedical Engineering University of California, Berkeley
- Masters Biotechnology Stanford University
Why Is Dirk Gevers Influential?
(Suggest an Edit or Addition)Dirk Gevers's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Metagenomic biomarker discovery and explanation (2011) (8740)
- Structure, Function and Diversity of the Healthy Human Microbiome (2012) (8630)
- Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. (2011) (2867)
- Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing (2012) (2779)
- The treatment-naive microbiome in new-onset Crohn's disease. (2014) (2269)
- A framework for human microbiome research (2012) (2113)
- Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment (2012) (2091)
- Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies (2011) (1911)
- Genomic analysis identifies association of Fusobacterium with colorectal carcinoma. (2012) (1492)
- The microbiome in inflammatory bowel disease: current status and the future ahead. (2014) (1330)
- Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity (2016) (1208)
- Microbial Co-occurrence Relationships in the Human Microbiome (2012) (1159)
- Re-evaluating prokaryotic species (2005) (981)
- Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome (2012) (912)
- Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease (2015) (878)
- The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes. (2015) (825)
- Potential role of intratumor bacteria in mediating tumor resistance to the chemotherapeutic drug gemcitabine (2017) (804)
- Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples (2012) (760)
- Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability (2015) (684)
- A Catalog of Reference Genomes from the Human Microbiome (2010) (683)
- Applicability of rep-PCR fingerprinting for identification of Lactobacillus species. (2001) (637)
- Experimental and analytical tools for studying the human microbiome (2011) (627)
- Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications (2011) (588)
- A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy (2012) (561)
- Host genetic variation impacts microbiome composition across human body sites (2015) (540)
- Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans (2016) (533)
- Relating the metatranscriptome and metagenome of the human gut (2014) (514)
- Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans (2016) (511)
- Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton (2008) (489)
- Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease (2016) (485)
- Phylogeny and Molecular Identification of Vibrios on the Basis of Multilocus Sequence Analysis (2005) (472)
- The human gut microbiome in early-onset type 1 diabetes from the TEDDY study (2018) (466)
- The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids (2015) (458)
- Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation (2017) (451)
- Fecal microbiota transplant for relapsing Clostridium difficile infection using a frozen inoculum from unrelated donors: a randomized, open-label, controlled pilot study. (2014) (424)
- Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature. (2014) (402)
- Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. (2005) (385)
- The Human Microbiome Project: A Community Resource for the Healthy Human Microbiome (2012) (378)
- Identifying personal microbiomes using metagenomic codes (2015) (364)
- Opinion: Re-evaluating prokaryotic species. (2005) (336)
- Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission (2014) (330)
- A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients (2017) (324)
- Complex host genetics influence the microbiome in inflammatory bowel disease (2014) (313)
- Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov. (2009) (298)
- The Human Microbiome Project strategy for comprehensive sampling of the human microbiome and why it matters (2013) (293)
- Evaluation of 16S rDNA-Based Community Profiling for Human Microbiome Research (2012) (282)
- Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants (2013) (276)
- Comparative Genomics of Enterococci: Variation in Enterococcus faecalis, Clade Structure in E. faecium, and Defining Characteristics of E. gallinarum and E. casseliflavus (2012) (272)
- The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites. (2012) (264)
- Molecular Characterization of tet(M) Genes in Lactobacillus Isolates from Different Types of Fermented Dry Sausage (2003) (262)
- Identification of lactobacilli by pheS and rpoA gene sequence analyses. (2007) (257)
- Non-Invasive Mapping of the Gastrointestinal Microbiota Identifies Children with Inflammatory Bowel Disease (2012) (254)
- Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation. (2018) (243)
- Microbiotas from Humans with Inflammatory Bowel Disease Alter the Balance of Gut Th17 and ROR&ggr;t+ Regulatory T Cells and Exacerbate Colitis in Mice (2019) (241)
- Taxonomy of the family Campylobacteraceae (2008) (234)
- Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque. (2015) (233)
- The incidence of nirS and nirK and their genetic heterogeneity in cultivated denitrifiers. (2006) (218)
- ConStrains identifies microbial strains in metagenomic datasets (2015) (214)
- Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes (2012) (208)
- Mobile genes in the human microbiome are structured from global to individual scales (2016) (200)
- Conservation of the Chitin Utilization Pathway in the Vibrionaceae (2007) (194)
- Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes (2016) (184)
- Towards a prokaryotic genomic taxonomy. (2005) (182)
- In vitro conjugal transfer of tetracycline resistance from Lactobacillus isolates to other Gram-positive bacteria. (2003) (182)
- The influence of a short-term gluten-free diet on the human gut microbiome (2016) (180)
- Gene duplication and biased functional retention of paralogs in bacterial genomes. (2004) (175)
- The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment. (2011) (164)
- Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease (2015) (156)
- Increased Intestinal Microbial Diversity Following Fecal Microbiota Transplant for Active Crohn's Disease (2016) (151)
- Horizontal transfer of tet(M) and erm(B) resistance plasmids from food strains of Lactobacillus plantarum to Enterococcus faecalis JH2-2 in the gastrointestinal tract of gnotobiotic rats. (2007) (143)
- Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning (2015) (134)
- Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome. (2013) (133)
- Comparative and Functional Genomics of Rhodococcus opacus PD630 for Biofuels Development (2011) (123)
- The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571 (2008) (119)
- Diversity Analysis of Dairy and Nondairy Lactococcus lactis Isolates, Using a Novel Multilocus Sequence Analysis Scheme and (GTG)5-PCR Fingerprinting (2007) (114)
- Transmission of human-associated microbiota along family and social networks (2019) (109)
- Genetic Factors and the Intestinal Microbiome Guide Development of Microbe-Based Therapies for Inflammatory Bowel Diseases. (2019) (108)
- Identification of Bifidobacterium species using rep-PCR fingerprinting. (2003) (108)
- Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment (2016) (102)
- The intestinal microbiome in type 1 diabetes (2014) (93)
- Phylogeny and Identification of Enterococci by atpA Gene Sequence Analysis (2005) (91)
- Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer (2017) (88)
- High-Quality Draft Genome Sequences of 28 Enterococcus sp. Isolates (2010) (88)
- Bioinformatics for the Human Microbiome Project (2012) (84)
- Skin Microbiome Imbalance in Patients with STAT1/STAT3 Defects Impairs Innate Host Defense Responses (2013) (78)
- Distinct microbiome in pouchitis compared to healthy pouches in ulcerative colitis and familial adenomatous polyposis (2011) (73)
- Stepping stones towards a new prokaryotic taxonomy (2006) (72)
- Characterization of Intestinal Microbiota in Ulcerative Colitis Patients with and without Primary Sclerosing Cholangitis. (2016) (70)
- Advancing the Microbiome Research Community (2014) (66)
- Nitric oxide reductase (norB) gene sequence analysis reveals discrepancies with nitrite reductase (nir) gene phylogeny in cultivated denitrifiers. (2007) (61)
- Natural history of the infant gut microbiome and impact of antibiotic treatments on strain-level diversity and stability (2016) (52)
- MetaRef: a pan-genomic database for comparative and community microbial genomics (2013) (52)
- Prevalence and diversity of tetracycline resistant lactic acid bacteria and their tet genes along the process line of fermented dry sausages. (2003) (51)
- Defined microbiota transplant restores Th17/RORγt+ regulatory T cell balance in mice colonized with inflammatory bowel disease microbiotas (2019) (44)
- Isolation and identification of tetracycline resistant lactic acid bacteria from pre-packed sliced meat products. (2000) (43)
- Biphasic kinetics of growth and bacteriocin production with Lactobacillus amylovorus DCE 471 occur under stress conditions. (2003) (42)
- Identification of lactic acid bacteria in Moroccan raw milk and traditionally fermented skimmed milk ‘lben’ (2009) (42)
- A Microbiome Foundation for the Study of Crohn's Disease. (2017) (38)
- Microbial community function and biomarker discovery in the human microbiome (2011) (36)
- Vibrio chromosomes share common history (2010) (34)
- Precise quantification of bacterial strains after fecal microbiota transplantation delineates long-term engraftment and explains outcomes (2021) (32)
- Towards a prokaryotic genomic taxonomy q (2005) (32)
- Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota (2013) (31)
- Comparison of the antimicrobial tolerance of oxytetracycline-resistant heterotrophic bacteria isolated from hospital sewage and freshwater fishfarm water in Belgium. (2001) (30)
- Screening of bacterial contamination during gelatine production by means of denaturing gradient gel electrophoresis, focussed on Bacillus and related endospore‐forming genera (2004) (22)
- Metagenomic Characterization of Microbial Communities In Situ Within the Deeper Layers of the Ileum in Crohn’s Disease (2016) (22)
- Mo1228 Fecal Microbiota Transplantation Induces Early Improvement in Symptoms in Patients With Active Crohn's Disease (2014) (20)
- Corrigendum. Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature. (2015) (17)
- The classroom microbiome and asthma morbidity in children attending 3 inner-city schools. (2018) (17)
- Linear Plasmids and Phytopathogenicity (2007) (14)
- Phylogenetic and genomic analysis (2007) (13)
- Comparative and Functional Genomics of Rhodococcus opacus PD 630 for Biofuels Development (2011) (13)
- Host genetic variation impacts microbiome composition across human body sites (2015) (10)
- Evaluation of bacterial ribosomal RNA (rRNA) depletion methods for sequencing microbial community transcriptomes (2010) (8)
- Genomic and phenotypic comparison of Bacillus fumarioli isolates from geothermal Antarctic soil and gelatine. (2004) (7)
- Correction: The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes (vol 17, pg 260, 2015) (2016) (6)
- Microbial community function and biomarker discovery in the human microbiome (2011) (4)
- Corrigendum: Mobile genes in the human microbiome are structured from global to individual scales (2017) (4)
- Tetracycline resistance in lactic acid bacteria isolated from fermented dry sausages (2002) (3)
- Quantification of discrete gut bacterial strains following fecal transplantation for recurrent Clostridioides difficile infection demonstrates long-term stable engraftment in non-relapsing recipients (2020) (3)
- Inflammatory bowel disease microbiotas alter gut CD4 T-cell homeostasis and drive colitis in mice (2018) (2)
- 850a The treatment-naive microbiome in early-onset Crohn's Disease (2014) (2)
- 87 Gene-Microbiome Interactions Underlying the Onset and the Clinical Phenotypes of Inflammatory Bowel Disease (2016) (2)
- Gene duplicates in vibrio genomes (2006) (1)
- The influence of a short-term gluten-free diet on the human gut microbiome (2016) (1)
- Complex host genetics influence the microbiome in inflammatory bowel disease (2014) (1)
- Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes (2012) (1)
- Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment (2012) (1)
- 585: Distinct vaginal microbiome profiles are associated with host mitochondrial DNA (mtDNA) haplogroup and SNP variants (2012) (1)
- Author Correction: Precise quantification of bacterial strains after fecal microbiota transplantation delineates long-term engraftment and explains outcomes (2022) (1)
- Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples (2012) (1)
- Sa1799 Evaluation of Location-Specific, Tissue-Associated Microbiota in the Ileal Pouch, Terminal Ileum and Colon in Inflammatory Bowel Disease (IBD) (2013) (0)
- Meeting report for the 1st skin microbiota workshop, boulder, CO October 15-16 2012 (2014) (0)
- Sequence-Based Discovery of Novel Bacteria, Bradyrhizobium Enterica, in Cord Colitis Syndrome (2013) (0)
- of Nebraska - Lincoln Advancing the Microbiome Research Community Advancing the Microbiome Research Community (2020) (0)
- Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants (2013) (0)
- P700 Evaluation of location-specific, tissue-associated microbiota in the ileal pouch, terminal ileum and colon in inflammatory bowel disease (IBD) (2013) (0)
- 263 Characterization of the Tissue-Associated Microbiome in Active and Inactive IBD (2013) (0)
- Environmental vs. Genetic Influence on the Intestinal Microbiome of Monozygotic and Dizygotic Twins (2011) (0)
- Next-Generation Sequencing for the Identification of Transplantation-Associated Pathogens (2012) (0)
- University of Groningen Complex host genetics influence the microbiome in inflammatory bowel disease (2017) (0)
- A prospective longitudinal analysis of the developing gut microbiome in infants en route to type 1 diabetes (2014) (0)
- Early intestinal colonization phenotypes predict necrotizing enterocolitis in preterm infants (2013) (0)
- Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer (2017) (0)
- Skin Microbiota Workshop: Multidisciplinary Perspectives, Challenges and Opportunities (2014) (0)
- Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease (2015) (0)
- Mo1809 Variations in Longitudinal Microbiome and Metabolome Trajectories Between Newly-Diagnosed Patients With Inflammatory Bowel Disease (2015) (0)
- A pilot study of TLR4 polymorphism in relation to intestinal dysbiosis and risk of necrotizing enterocolitis in preterm infants (2013) (0)
- TheDynamics of theHuman InfantGutMicrobiome in Development and in Progression toward Type 1 Diabetes Graphical (2015) (0)
- Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes (2016) (0)
- The human gut microbiome in early-onset type 1 diabetes from the TEDDY study (2018) (0)
- P698 Characterization of the tissue-associated microbiome in active and inactive IBD (2013) (0)
- The genome of the versatile nitrogen fixer ORS571-8 (2011) (0)
- Variability and Bias in Microbiome Metagenomic Sequencing: an Interlaboratory Study Comparing Experimental Protocols (2023) (0)
- Meeting report for the 1st skin microbiota workshop, boulder, CO October 15-16 2012 (2014) (0)
- Capacity of a Microbial Synbiotic To Rescue the In Vitro Metabolic Activity of the Gut Microbiome following Perturbation with Alcohol or Antibiotics (2023) (0)
- 78 Host Ileal APOA1 and DUOX2 Co-Expression Modules Are Associated With Microbial Shifts and Clinical Outcomes in Treatment Naive Pediatric Crohn Disease (2014) (0)
- Transmission of human-associated microbiota along family and social networks (2019) (0)
- P697 Candida albicans colonization and anti-glycan antibodies in active and quiescent Crohn's disease (2013) (0)
- A framework for human microbiome research A framework for human microbiome research (2020) (0)
- A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients (2017) (0)
- Mo1947 - Inflammatory Bowel Disease-Associated Gut Microbiotas Impact Homeostatic and Pathogenic Intestinal Immune Responses in Gnotobiotic Mice (2018) (0)
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What Schools Are Affiliated With Dirk Gevers?
Dirk Gevers is affiliated with the following schools:
