Douglas H. Turner
#67,441
Most Influential Person Now
American chemist
Douglas H. Turner's AcademicInfluence.com Rankings
Douglas H. Turnerchemistry Degrees
Chemistry
#1623
World Rank
#2389
Historical Rank
#583
USA Rank
Organic Chemistry
#380
World Rank
#449
Historical Rank
#97
USA Rank
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Chemistry
Why Is Douglas H. Turner Influential?
(Suggest an Edit or Addition)According to Wikipedia, Douglas "Doug" H. Turner is an American chemist and Professor of Chemistry at the University of Rochester. Early life Turner grew up in Brooklyn, New York. Education Turner attended Harvard College, where he graduated cum laude in Chemistry and was commissioned as a Second Lieutenant in the U.S. Army. He did his graduate work in the Chemistry Departments of Columbia University and Brookhaven National Labs, where he worked with George Flynn and Norman Sutin to develop the Raman laser temperature jump method for measuring kinetics on a nanosecond time scale. During this period, he also spent three months in Anniston, Alabama taking the Officer's Basic Course of the Army's Chemical Corp. Deciding that he liked science more than war, he turned down the opportunity to continue as an active duty officer and went to the University of California at Berkeley to postdoc with Ignacio Tinoco, Jr. There, he invented fluorescence detected circular dichroism for measuring the optical activity of the fluorescent component of a solution.
Douglas H. Turner's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. (1999) (3705)
- Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. (2004) (1381)
- Improved free-energy parameters for predictions of RNA duplex stability. (1986) (1278)
- Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide (1999) (1261)
- Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. (1998) (1077)
- Improved predictions of secondary structures for RNA. (1989) (778)
- Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding. (1994) (484)
- NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure (2009) (434)
- Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp. (1983) (413)
- Dynalign: an algorithm for finding the secondary structure common to two RNA sequences. (2002) (408)
- RNA structure prediction. (1988) (404)
- Prediction of RNA secondary structure by free energy minimization. (2006) (379)
- Predicting optimal and suboptimal secondary structure for RNA. (1990) (369)
- Predicting thermodynamic properties of RNA. (1995) (312)
- Investigation of the structural basis for thermodynamic stabilities of tandem GU mismatches: solution structure of (rGAGGUCUC)2 by two-dimensional NMR and simulated annealing. (1996) (265)
- Predicting oligonucleotide affinity to nucleic acid targets. (1999) (235)
- Expanded CUG repeat RNAs form hairpins that activate the double-stranded RNA-dependent protein kinase PKR. (2000) (230)
- A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison. (1991) (180)
- Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin. (1992) (159)
- Thermal unfolding of a group I ribozyme: the low-temperature transition is primarily disruption of tertiary structure. (1993) (157)
- The contribution of pseudouridine to stabilities and structure of RNAs (2013) (146)
- Thermodynamics of single mismatches in RNA duplexes. (1999) (146)
- Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics. (1993) (145)
- Laser temperature-jump, spectroscopic, and thermodynamic study of salt effects on duplex formation by dGCATGC. (1989) (144)
- Dynamics of ribozyme binding of substrate revealed by fluorescence-detected stopped-flow methods. (1992) (142)
- Thermodynamic and spectroscopic study of bulge loops in oligoribonucleotides. (1990) (139)
- Folding and finding RNA secondary structure. (2010) (139)
- Reparameterization of RNA χ Torsion Parameters for the AMBER Force Field and Comparison to NMR Spectra for Cytidine and Uridine (2010) (136)
- Laser Raman temperature-jump study of the kinetics of the triiodide equilibrium. Relaxation times in the 10-8 -10-7 second range (1972) (126)
- Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in RNA internal loops: Evidence for stable hydrogen-bonded U.U and C.C.+ pairs. (1991) (124)
- Measuring the thermodynamics of RNA secondary structure formation. (1997) (123)
- Molecular complexes of nucleosides and nucleotides with a monomeric cationic porphyrin and some of its metal derivatives. (1985) (120)
- A periodic table of symmetric tandem mismatches in RNA. (1995) (114)
- A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation (2006) (113)
- Thermodynamics of RNA-RNA duplexes with 2- or 4-thiouridines: implications for antisense design and targeting a group I intron. (1999) (110)
- Improved parameters for prediction of RNA structure. (1987) (110)
- Thermodynamics of (dG--dC)3 double-helix formation in water and deuterium oxide. (1981) (108)
- Polymer-supported RNA synthesis and its application to test the nearest-neighbor model for duplex stability. (1986) (104)
- Sequence dependence for the energetics of dangling ends and terminal base pairs in ribonucleic acid. (1987) (103)
- Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: an empirical estimate of the energetics of hydrogen bonds in nucleic acids. (1986) (103)
- The influence of locked nucleic acid residues on the thermodynamic properties of 2′-O-methyl RNA/RNA heteroduplexes (2005) (103)
- Contributions of dangling end stacking and terminal base-pair formation to the stabilities of XGGCCp, XCCGGp, XGGCCYp, and XCCGGYp helixes. (1985) (102)
- Effects of 3' dangling end stacking on the stability of GGCC and CCGG double helixes (1983) (99)
- Comparison of binding of mixed ribose-deoxyribose analogues of CUCU to a ribozyme and to GGAGAA by equilibrium dialysis: evidence for ribozyme specific interactions with 2' OH groups. (1991) (98)
- Effects of GA mismatches on the structure and thermodynamics of RNA internal loops. (1990) (97)
- Identification of potential conserved RNA secondary structure throughout influenza A coding regions. (2011) (96)
- Solution structure of (rGGCAGGCC)2 by two-dimensional NMR and the iterative relaxation matrix approach. (1996) (92)
- Nearest-neighbor parameters for G.U mismatches: [formula; see text] is destabilizing in the contexts [formula; see text] and [formula; see text] but stabilizing in [formula; see text]. (1991) (90)
- Thermodynamics of three-way multibranch loops in RNA. (2001) (90)
- Microarrays for identifying binding sites and probing structure of RNAs (2014) (88)
- Fluorescence-detected circular dichroism. (1974) (88)
- Conformational ensembles of RNA oligonucleotides from integrating NMR and molecular simulations (2018) (88)
- Experimentally derived nearest-neighbor parameters for the stability of RNA three- and four-way multibranch loops. (2002) (87)
- RNA Secondary Structure Prediction (2007) (87)
- Laser temperature-jump study of stacking in adenylic acid polymers. (1979) (86)
- Stacking in RNA: NMR of Four Tetramers Benchmark Molecular Dynamics (2015) (86)
- Thermodynamics of base pairing. (1996) (85)
- Free energy increments for hydrogen bonds in nucleic acid base pairs (1987) (85)
- Thermodynamic study of internal loops in oligoribonucleotides: symmetric loops are more stable than asymmetric loops. (1991) (85)
- An NAD derivative produced during transfer RNA splicing: ADP-ribose 1"-2" cyclic phosphate. (1993) (84)
- Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element. (1997) (84)
- Faculty Opinions recommendation of RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble. (2005) (83)
- Benchmarking AMBER Force Fields for RNA: Comparisons to NMR Spectra for Single-Stranded r(GACC) Are Improved by Revised χ Torsions (2011) (80)
- Sequence dependence of stability for coaxial stacking of RNA helixes with Watson-Crick base paired interfaces. (1994) (79)
- Energetics of internal GU mismatches in ribooligonucleotide helixes. (1986) (78)
- Thermodynamics of nonsymmetric tandem mismatches adjacent to G.C base pairs in RNA. (1997) (78)
- Functional group substitutions as probes of hydrogen bonding between GA mismatches in RNA internal loops (1991) (77)
- Optical melting measurements of nucleic acid thermodynamics. (2009) (75)
- Testing the Nearest Neighbor Model for Canonical RNA Base Pairs: Revision of GU Parameters (2012) (75)
- Free energy contributions of G.U and other terminal mismatches to helix stability. (1986) (73)
- Solvent effects on the dynamics of (dG‐dC)3 (1983) (72)
- Structure determination of noncanonical RNA motifs guided by 1H NMR chemical shifts (2014) (71)
- Association of 2'-5' oligoribonucleotides. (1992) (71)
- A model for the stabilities of RNA hairpins based on a study of the sequence dependence of stability for hairpins of six nucleotides. (1994) (70)
- RNA hairpin loop stability depends on closing base pair. (1993) (69)
- Bulges in nucleic acids (1992) (68)
- The stability and structure of tandem GA mismatches in RNA depend on closing base pairs. (1994) (68)
- Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs. (1999) (67)
- The Nuclear Magnetic Resonance of CCCC RNA Reveals a Right-Handed Helix, and Revised Parameters for AMBER Force Field Torsions Improve Structural Predictions from Molecular Dynamics (2013) (66)
- Factors affecting the thermodynamic stability of small asymmetric internal loops in RNA. (2000) (63)
- Solvent effects on the kinetics and thermodynamics of stacking in poly(cytidylic acid). (1981) (61)
- Revision of AMBER Torsional Parameters for RNA Improves Free Energy Predictions for Tetramer Duplexes with GC and iGiC Base Pairs (2011) (60)
- Fluorescence detected circular dichroism. Theory (1976) (57)
- Structural features of a six-nucleotide RNA hairpin loop found in ribosomal RNA. (1996) (56)
- Transient ADP-ribosylation of a 2′-Phosphate Implicated in Its Removal from Ligated tRNA during Splicing in Yeast* (1999) (55)
- Oligonucleotide directed misfolding of RNA inhibits Candida albicans group I intron splicing (2002) (54)
- Effects of substrate structure on the kinetics of circle opening reactions of the self-splicing intervening sequence from Tetrahymena thermophila: evidence for substrate and Mg2+ binding interactions. (1989) (50)
- The time dependence of chemical modification reveals slow steps in the folding of a group I ribozyme. (1995) (49)
- Investigation of the structural basis for thermodynamic stabilities of tandem GU wobble pairs: NMR structures of (rGGAGUUCC)2 and (rGGAUGUCC)2. (1997) (49)
- 5'-Amino pyrene provides a sensitive, nonperturbing fluorescent probe of RNA secondary and tertiary structure formation (1993) (48)
- NMR-Assisted Prediction of RNA Secondary Structure: Identification of a Probable Pseudoknot in the Coding Region of an R2 Retrotransposon (2008) (48)
- Solvent effects on the stability of A7U7p. (1985) (48)
- Free Energy Increments for Hydrogen Bonds in Nucleic Acid Base Pairs. (1987) (47)
- Kinetics for reaction of a circularized intervening sequence with CU, UCU, CUCU, and CUCUCU: mechanistic implications from the dependence on temperature and on oligomer and Mg2+ concentrations. (1988) (47)
- Thermodynamics of coaxially stacked helixes with GA and CC mismatches. (1996) (47)
- Replacement of the conserved G.U with a G-C pair at the cleavage site of the Tetrahymena ribozyme decreases binding, reactivity, and fidelity. (1994) (46)
- NMR structures of r(GCAGGCGUGC)2 and determinants of stability for single guanosine-guanosine base pairs. (2000) (46)
- Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2). (2000) (46)
- The determination of RNA folding nearest neighbor parameters. (2014) (45)
- Some very rapid reactions of porphyrins in aqueous solution. (1976) (45)
- Melting and chemical modification of a cyclized self-splicing group I intron: similarity of structures in 1 M Na+, in 10 mM Mg2+, and in the presence of substrate. (1990) (45)
- Stimulated Raman effect. A new source of laser temperature-jump Heating (1970) (44)
- Solution structure of (rGCGGACGC)2 by two-dimensional NMR and the iterative relaxation matrix approach. (1996) (44)
- An RNA Molecular Switch: Intrinsic Flexibility of 23S rRNA Helices 40 and 68 5'-UAA/5'-GAN Internal Loops Studied by Molecular Dynamics Methods. (2010) (43)
- RNA challenges for computational chemists. (2005) (42)
- The kinetics of codon-anticodon interaction in yeast phenylalanine transfer RNA. (1975) (41)
- Solvent effects on thermodynamics of double-helix formation in (dG-dC)3. (1981) (41)
- Contributions of stacking, preorganization, and hydrogen bonding to the thermodynamic stability of duplexes between RNA and 2'-O-methyl RNA with locked nucleic acids. (2009) (41)
- In vivo analysis of influenza A mRNA secondary structures identifies critical regulatory motifs (2019) (41)
- Thermodynamic studies of RNA stability. (1984) (41)
- Dimerization of Proflavin by the Laser Raman Temperature-Jump Method (1972) (40)
- Facilitating RNA structure prediction with microarrays. (2006) (40)
- The 3′ Splice Site of Influenza A Segment 7 mRNA Can Exist in Two Conformations: A Pseudoknot and a Hairpin (2012) (39)
- Thermodynamic stabilities of internal loops with GU closing pairs in RNA. (2001) (39)
- Rate of intersystem crossing between 1A and 5Aa states of an iron(II) complex in solutions (1973) (39)
- Solution structure of an RNA internal loop with three consecutive sheared GA pairs. (2005) (38)
- Influenza A Virus Coding Regions Exhibit Host-Specific Global Ordered RNA Structure (2012) (37)
- The energetics of small internal loops in RNA (1999) (37)
- Stability and structure of RNA duplexes containing isoguanosine and isocytidine. (2001) (37)
- 2 – Thermodynamics of RNA Secondary Structure Formation (2001) (36)
- Sequence dependence for the energetics of terminal mismatches in ribooligonucleotides. (1987) (35)
- Secondary structures for 5' regions of R2 retrotransposon RNAs reveal a novel conserved pseudoknot and regions that evolve under different constraints. (2009) (35)
- The influenza A segment 7 mRNA 3′ splice site pseudoknot/hairpin family (2012) (35)
- Binding of guanosine and 3' splice site analogues to a group I ribozyme: interactions with functional groups of guanosine and with additional nucleotides. (1993) (35)
- Effects of Restrained Sampling Space and Nonplanar Amino Groups on Free-Energy Predictions for RNA with Imino and Sheared Tandem GA Base Pairs Flanked by GC, CG, iGiC or iCiG Base Pairs (2009) (35)
- Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function (2008) (34)
- G.A and U.U mismatches can stabilize RNA internal loops of three nucleotides. (1996) (34)
- Thermodynamic and activation parameters for binding of a pyrene-labeled substrate by the Tetrahymena ribozyme: docking is not diffusion-controlled and is driven by a favorable entropy change. (1995) (34)
- RNA pseudoknots: folding and finding (2010) (33)
- A chemical synthesis of LNA-2,6-diaminopurine riboside, and the influence of 2′-O-methyl-2,6-diaminopurine and LNA-2,6-diaminopurine ribosides on the thermodynamic properties of 2′-O-methyl RNA/RNA heteroduplexes (2007) (33)
- Laser crosslinking of E. coli RNA polymerase and T7 DNA. (1982) (32)
- Improved free energies for G.C base-pairs. (1985) (32)
- Solvent effects on stacking. A kinetic and spectroscopic study of thionine association in aqueous alcohol solutions (1978) (31)
- Laser temperature jump study of solvent effects of poly(adenylic acid) stacking. (1980) (31)
- 17 Thermodynamic Considerations for Evolution by RNA (1993) (31)
- Factors affecting thermodynamic stabilities of RNA 3 x 3 internal loops. (2004) (31)
- Cooperative and anticooperative binding to a ribozyme. (1993) (31)
- Nearest neighbor parameters for Watson–Crick complementary heteroduplexes formed between 2′-O-methyl RNA and RNA oligonucleotides (2006) (31)
- An Updated Recursive Algorithm for RNA Secondary Structure Prediction with Improved Thermodynamic Parameters (1997) (31)
- Fluorescence-detected stopped flow with a pyrene labeled substrate reveals that guanosine facilitates docking of the 5' cleavage site into a high free energy binding mode in the Tetrahymena ribozyme. (1994) (30)
- Intersystem-crossing dynamics and coordination geometry changes observed by ultrasonic and laser temperature-jump relaxation of the 2T .dblharw. 6A spin equilibrium of hexadentate iron(III) complexes in solution (1980) (30)
- The NMR structure of an internal loop from 23S ribosomal RNA differs from its structure in crystals of 50s ribosomal subunits. (2006) (30)
- Physics‐based all‐atom modeling of RNA energetics and structure (2017) (30)
- Antisense Oligonucleotides Targeting Influenza A Segment 8 Genomic RNA Inhibit Viral Replication (2016) (30)
- Uptake and antifungal activity of oligonucleotides in Candida albicans (2003) (30)
- A Pneumocystis carinii group I intron ribozyme that does not require 2' OH groups on its 5' exon mimic for binding to the catalytic core. (1997) (30)
- RNA Internal Loops with Tandem AG Pairs: The Structure of the 5′GAGU/3′UGAG Loop Can Be Dramatically Different from Others, Including 5′AAGU/3′UGAA† (2010) (29)
- An alternating sheared AA pair and elements of stability for a single sheared purine-purine pair flanked by sheared GA pairs in RNA. (2006) (29)
- Fluorescence detected circular dichroism of proteins with single fluorescent tryptophans (1981) (29)
- NMR structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2: probing the structural features that shape the thermodynamic stability of GA pairs. (2007) (29)
- Self-Folding of Naked Segment 8 Genomic RNA of Influenza A Virus (2016) (29)
- Substrate recognition by a yeast 2'-phosphotransferase involved in tRNA splicing and by its Escherichia coli homolog. (2001) (28)
- Predicting the Kinetics of RNA Oligonucleotides Using Markov State Models. (2016) (27)
- Nongenomic Transmission Across Generations of Maternal Behavior and Stress Responses in the Rat (1999) (27)
- Secondary Structure of a Conserved Domain in the Intron of Influenza A NS1 mRNA (2013) (27)
- Optimization of an AMBER Force Field for the Artificial Nucleic Acid, LNA, and Benchmarking with NMR of L(CAAU) (2013) (27)
- NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions. (2011) (26)
- Consecutive GA pairs stabilize medium-size RNA internal loops. (2006) (25)
- Mutations Designed by Ensemble Defect to Misfold Conserved RNA Structures of Influenza A Segments 7 and 8 Affect Splicing and Attenuate Viral Replication in Cell Culture (2016) (25)
- The kinetics of binding of U-U-C-A to a dodecanucleotide anticodon fragment from yeast tRNA-Phe. (1976) (25)
- Fluorescence Competition and Optical Melting Measurements of RNA Three-Way Multibranch Loops Provide a Revised Model for Thermodynamic Parameters† (2010) (25)
- A CA+ Pair Adjacent to a Sheared GA or AA Pair Stabilizes Size-Symmetric RNA Internal Loops† (2009) (25)
- Secondary Structure of a Conserved Domain in an Intron of Influenza A M1 mRNA (2014) (24)
- The crystal structure of an RNA oligomer incorporating tandem adenosine-inosine mismatches. (1997) (24)
- Understanding the role of base stacking in nucleic acids. MD and QM analysis of tandem GA base pairs in RNA duplexes. (2012) (24)
- NMR studies of DNA single strands and DNA:RNA hybrids with and without 1-propynylation at C5 of oligopyrimidines. (2003) (24)
- The thermodynamics of 3'-terminal pyrene and guanosine for the design of isoenergetic 2'-O-methyl-RNA-LNA chimeric oligonucleotide probes of RNA structure. (2008) (23)
- Secondary structure models of the 3' untranslated regions of diverse R2 RNAs. (2004) (22)
- 22 Predicting RNA Secondary Structure (2006) (22)
- RNA Secondary Structure Prediction (2000) (22)
- Interpreting oligonucleotide microarray data to determine RNA secondary structure: application to the 3' end of Bombyx mori R2 RNA. (2006) (21)
- Structural features and thermodynamics of the J4/5 loop from the Candida albicans and Candida dubliniensis group I introns. (2004) (21)
- 10 The Interactions That Shape RNA Structure (1999) (21)
- Inhibition of Escherichia coli RNase P by oligonucleotide directed misfolding of RNA. (2003) (21)
- NMR reveals the absence of hydrogen bonding in adjacent UU and AG mismatches in an isolated internal loop from ribosomal RNA. (2007) (21)
- Biophysical Analysis of Influenza A Virus RNA Promoter at Physiological Temperatures* (2011) (20)
- Recognition elements for 5' exon substrate binding to the Candida albicans group I intron. (2001) (20)
- Fluorescence detected circular dichroism study of the anticodon loop of yeast tRNAPhe. (1975) (20)
- Fluorescence-detected circular dichroism of ethidium bound to poly(dG-dC) and poly(dG-m5dC) under B- and Z-form conditions. (1986) (20)
- Selective quenching of fluorescence from unbound oligonucleotides by gold nanoparticles as a probe of RNA structure. (2007) (20)
- In vitro suicide inhibition of self-splicing of a group I intron from Pneumocystis carinii by an N3' --> P5' phosphoramidate hexanucleotide. (1999) (19)
- Proton magnetic resonance melting studies of CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp. (1983) (19)
- Thermodynamics of RNA internal loops with a guanosine-guanosine pair adjacent to another noncanonical pair. (2001) (19)
- Dynamics of cobalt(II) spin-equilibrium complexes (1995) (19)
- Chemical synthesis of LNA-2-thiouridine and its influence on stability and selectivity of oligonucleotide binding to RNA. (2009) (18)
- Structures of two RNA octamers containing tandem G.A base pairs. (2004) (17)
- A mechanistic framework for the second step of splicing catalyzed by the Tetrahymena ribozyme. (1996) (16)
- Structural Features of a 3′ Splice Site in Influenza A (2015) (16)
- New approaches to targeting RNA with oligonucleotides: inhibition of group I intron self-splicing. (2004) (16)
- Binding enhancement by tertiary interactions and suicide inhibition of a Candida albicans group I intron by phosphoramidate and 2'-O-methyl hexanucleotides. (2001) (16)
- Novel Conformation of an RNA Structural Switch (2012) (16)
- Crystal structure of a poly(rA) staggered zipper at acidic pH: evidence that adenine N1 protonation mediates parallel double helix formation (2016) (16)
- Stacking effects on local structure in RNA: changes in the structure of tandem GA pairs when flanking GC pairs are replaced by isoG-isoC pairs. (2007) (15)
- Further verification of fluorescence-detected circular dichroism (1980) (15)
- Thermodynamic stability and structural features of the J4/5 loop in a Pneumocystis carinii group I intron. (2003) (15)
- Fluorescence Competition Assay Measurements of Free Energy Changes for RNA Pseudoknots† (2009) (15)
- Improved predictions ofsecondary structures forRNA (1989) (15)
- Laser temperature jump study of solvent effects on proflavin stacking (1979) (15)
- Targeting a Pneumocystis carinii group I intron with methylphosphonate oligonucleotides: backbone charge is not required for binding or reactivity. (2000) (15)
- Photoselected fluorescence detected circular dichroism (1979) (15)
- Binding of a Fluorescent Oligonucleotide to a Circularized Intervening Sequence from Tetrahymena thermophila (1989) (14)
- Antisense binding enhanced by tertiary interactions: binding of phosphorothioate and N3'-->P5' phosphoramidate hexanucleotides to the catalytic core of a group I ribozyme from the mammalian pathogen Pneumocystis carinii. (1998) (14)
- Kinetics of the stacking of ethidium bromide by the Raman laser temperature-jump method. (1974) (14)
- Activity of Hoechst 33258 against Pneumocystis carinii f. sp. muris, Candida albicans, and Candida dubliniensis (2005) (14)
- Effects of terminal mismatches on RNA stability: thermodynamics of duplex formation for ACCGGGp, ACCGGAp, and ACCGGCp. (1985) (14)
- Molecular Mechanics Investigation of an Adenine-Adenine Non-Canonical Pair Conformational Change. (2011) (14)
- Identification of conserved RNA secondary structures at influenza B and C splice sites reveals similarities and differences between influenza A, B, and C (2014) (13)
- Improving RNA nearest neighbor parameters for helices by going beyond the two-state model (2018) (13)
- Nuclear Magnetic Resonance-Assisted Prediction of Secondary Structure for RNA: Incorporation of Direction-Dependent Chemical Shift Constraints (2015) (13)
- Fundamental interactions in RNA: Questions answered and remaining. (2013) (13)
- Guanosine binds to the Tetrahymena ribozyme in more than one step, and its 2'-OH and the nonbridging pro-Sp phosphoryl oxygen at the cleavage site are required for productive docking. (1997) (12)
- Nuclear Magnetic Resonance of Single Stranded RNAs and DNAs of CAAU and UCAAUC as Benchmarks for Molecular Dynamics Simulations. (2020) (12)
- Molecular recognition in purine-rich internal loops: thermodynamic, structural, and dynamic consequences of purine for adenine substitutions in 5'(rGGCAAGCCU)2. (2002) (11)
- RNA Structure Determination (2016) (11)
- Sheared Aanti.Aanti base pairs in a destabilizing 2 x 2 internal loop: the NMR structure of 5'(rGGCAAGCCU)2. (2002) (11)
- The Influenza A PB1-F2 and N40 Start Codons Are Contained within an RNA Pseudoknot. (2015) (10)
- Nuclear overhauser studies of CCGGAp, ACCGGp, and ACCGGUp. (1983) (10)
- Fluorescence-detected circular dichroism of ethidium bound to nucleic acids (1986) (10)
- Comparisons between Chemical Mapping and Binding to Isoenergetic Oligonucleotide Microarrays Reveal Unexpected Patterns of Binding to the Bacillus subtilis RNase P RNA Specificity Domain† (2010) (10)
- Effect of a 5'-phosphate on the stability of triple helix. (1993) (10)
- Accurate geometrical restraints for Watson–Crick base pairs (2019) (10)
- RNA Secondary Structure Prediction (2000) (9)
- Effects of Mg2+ and the 2' OH of guanosine on steps required for substrate binding and reactivity with the Tetrahymena ribozyme reveal several local folding transitions. (1997) (9)
- The R2 retrotransposon RNA families (2011) (9)
- Raman laser temperature-jump kinetics (1978) (9)
- Hoechst 33258 Selectively Inhibits Group I Intron Self‐Splicing by Affecting RNA Folding (2004) (9)
- Molecular recognition by the Candida albicans group I intron: tertiary interactions with an imino G.A pair facilitate binding of the 5' exon and lower the KM for guanosine. (2002) (8)
- Molecular dynamics correctly models the unusual major conformation of the GAGU RNA internal loop and with NMR reveals an unusual minor conformation (2018) (8)
- Influenza B virus has global ordered RNA structure in (+) and (−) strands but relatively less stable predicted RNA folding free energy than allowed by the encoded protein sequence (2013) (8)
- Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures. (2019) (8)
- 6.03 – Thermodynamics of RNA Secondary Structure Formation (1999) (8)
- Contributions of individual nucleotides to tertiary binding of substrate by a Pneumocystis carinii group I intron. (2000) (8)
- Irreversible inactivation of soybean lipoxygenase-1 by hydrophobic thiols. (2002) (7)
- Dynamics of a Group I Ribozyme Detected by Spectroscopic Methods (1996) (7)
- Surprising Sequence Effects on GU Closure of Symmetric 2 × 2 Nucleotide RNA Internal Loops. (2018) (6)
- Fluorescence-detected circular dichroism of ethidium in vivo and bound to deoxyribonucleic acid in vitro. (1985) (5)
- The Chemical Synthesis of Oligoribonucleotides with Selectively Placed 2′-O-Phosphates (2000) (5)
- RNA Secondary Structure Determination by NMR. (2016) (5)
- Correction: The 3′ Splice Site of Influenza A Segment 7 mRNA Can Exist in Two Conformations: A Pseudoknot and a Hairpin (2012) (5)
- Nuclear Magnetic Resonance Structure of an 8 × 8 Nucleotide RNA Internal Loop Flanked on Each Side by Three Watson-Crick Pairs and Comparison to Three-Dimensional Predictions. (2017) (4)
- J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns (2004) (3)
- Correction to NMR of CCCC RNA Reveals a Right-Handed Helix and Revised Parameters for AMBER Force Field Torsions Improve Structural Predictions from Molecular Dynamics (2013) (3)
- Use of Fluorescence Spectroscopy to Elucidate RNA Folding Pathways (2002) (3)
- Use of Chemical Modification To Elucidate RNA Folding Pathways (2002) (3)
- The Crystal Structure at 1.5 Å Resolution of an RNA Octamer Duplex Containing Tandem G·U Basepairs (2006) (3)
- INTERSYSTEM-CROSSING DYNAMICS AND COORDINATION GEOMETRY CHANGES OBSERVED BY ULTRASONIC AND LASER TEMPERATURE-JUMP RELAXATION OF THE 2T ⇌ 6A SPIN EQUILIBRIUM OF HEXADENTATE IRON(III) COMPLEXES IN SOLUTION (1981) (3)
- Conformational Ensemble of RNA Oligonucleotides from Reweighted Molecular Simulations (2017) (3)
- RNA Structure Determination. Methods and Protocols. (2017) (2)
- Inhibition of deoxyribooligonucleotides on the circle opening reaction of the intervening sequence from Tetrahymena thermophila. (1990) (2)
- Temperature-Jump Methods (in Chemical Kinetics Studies) (1987) (1)
- An RNA molecular switch: Intrinsic flexibility of 23S rRNA Helices 40 and 68 5'-UAA/5'-GAN internal loops studied by molecular dynamics methods. (2010) (1)
- The Chemical Synthesis of Oligoribonucleotides with Selectively Placed 2′‐O‐Phosphates. (2000) (1)
- APPENDIX 2: Schematic Diagrams of Secondary and Tertiary Structure Elements (1999) (1)
- Nuclear magnetic resonance reveals a two hairpin equilibrium near the 3′-splice site of influenza A segment 7 mRNA that can be shifted by oligonucleotides (2022) (1)
- Improved Parameters for Prediction of RNA Secondary Structure and Insights into why RNA forms Double Helixes (1986) (1)
- Aanti Base Pairs in a Destabilizing 2 × 2 Internal Loop : The NMR Structure of 5 ′ ( rGGCAAGCCU ) (1)
- Fluctuations in optical activity: A probe of fast reactions using light scattering (1981) (1)
- The tandem, Sheared PP Pairs in 5'(rGGCPPGCCU)2 (2002) (0)
- Raman Laser Temperature Jump Study of Solvent Effects on Simple Stacking Systems (1979) (0)
- The Tandem, Sheared PA Pairs in 5'(rGGCPAGCCU)2 (2002) (0)
- Faculty Opinions recommendation of Visualizing transient low-populated structures of RNA. (2013) (0)
- Faculty Opinions recommendation of A statistical sampling algorithm for RNA secondary structure prediction. (2004) (0)
- NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2 (2000) (0)
- RNA Duplex containing the internal loop 5'-UUCG/3'-GCUU (2019) (0)
- NMR Reveals that GU Base Pairs Flanking Internal Loops can Adopt Diverse Structures (2019) (0)
- Nucleic Acids Research Effects of substrate structure on the kinetics of circle opening reactions of the self-splicing intervening sequence from Tetrahymena thermophila: evidence for substrate and Mg^ binding interactions (2005) (0)
- Can Simulations be Recycled to Benchmark RNA Force Fields (2020) (0)
- Influenza B virus has global ordered RNA structure in (+) and (−) strands but relatively less stable predicted RNA folding free energy than allowed by the encoded protein sequence (2013) (0)
- STRUCTURE OF (5'-R(GP*GP*CP*GP*AP*GP*CP*C)-3')2 BY 2-D NMR, 1 STRUCTURE (1997) (0)
- Faculty Opinions recommendation of RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme. (2017) (0)
- Faculty Opinions recommendation of Crystal structure of the specificity domain of ribonuclease P. (2003) (0)
- SOLUTION NMR STRUCTURE OF AN RNA WITH TANDEM, SYMMETRIC GU MISMATCHES, 30 STRUCTURES (1997) (0)
- Faculty Opinions recommendation of NMR detection of structures in the HIV-1 5'-leader RNA that regulate genome packaging. (2011) (0)
- STRUCTURE OF RIBONUCLEIC ACID, NMR, MINIMIZED AVERAGE STRUCTURE (1997) (0)
- RNA structure containing GU base pairs (2007) (0)
- RNA Duplex containing the internal loop 5'-GCAU/3'-UACG (2019) (0)
- The Structure of Tandem GA RNA Pairs When Flanking Pairs are isoG-isoC Pairs (2007) (0)
- 3.6.4 List of symbols and abbreviations (1990) (0)
- Three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCAAAGCCG (2006) (0)
- An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stack (2006) (0)
- Structure of a 4X4 Nucleotide RNA Internal Loop from an R2 Retrotransposon (2011) (0)
- STRUCTURE OF RNA DUPLEXES (CIGCGICG)2 (2001) (0)
- RNA Duplex containing the internal loop 5'-GCUU/3'-UUCG (2019) (0)
- Faculty Opinions recommendation of RNA structural dynamics as captured by molecular simulations: A comprehensive overview. (2018) (0)
- Major Conformation of the Internal Loop 5'GAGU/3'UGAG (2012) (0)
- Faculty Opinions recommendation of NMR structure of the active conformation of the Varkud satellite ribozyme cleavage site. (2003) (0)
- 5'(dCCUCCUU)3':3'(rAGGAGGAAA)5' (2003) (0)
- The G7(syn)-G4(anti) structure of r(GCAGGCGUGC)2 (2000) (0)
- 5'(dCCPUPCPCPUPUP)3':3'(rAGGAGGAAA)5', where P=propynyl (2003) (0)
- Structural features of a 3' splice site influenza A: 19-nt duplex (2015) (0)
- Faculty Opinions recommendation of Differential helix stabilities and sites pre-organized for tertiary interactions revealed by monitoring local nucleotide flexibility in the bI5 group I intron RNA. (2004) (0)
- Measuring the Secondary Structure (1998) (0)
- Molecular Basis of RNA Catalysis (1989) (0)
- Structure of a GA Rich 8x8 Nucleotide RNA Internal Loop (2017) (0)
- Identification of conserved RNA secondary structures at influenza B and C splice sites reveals similarities and differences between influenza A, B, and C (2014) (0)
- The crystal structure at 1.5 angstroms resolution of an RNA octamer duplex containing tandem G.U basepairs. (2006) (0)
- ’-Amino Pyrene Provides a Sensitive , Nonperturbing Fluorescent Probe of RNA Secondary and Tertiary Structure Formation Ryszard Kierzek (2001) (0)
- Crystal Structure of the RNA octamer GIC(GA)GCC (2004) (0)
- TANDEM GU MISMATCHES IN RNA, NMR, 30 STRUCTURES (1997) (0)
- Norman Sutin, Founding Editor of Comments on Inorganic Chemistry: A Remembrance and Tribute (2022) (0)
- The tandem, Face-to-Face AP Pairs in 5'(rGGCAPGCCU)2 (2002) (0)
- STRUCTURE OF RNA (5'-R(GP*CP*GP*GP*AP*CP*GP*C)-3') ANTI-PARALLEL RNA DUPLEX WITH TANDEM G:A MISMATCHES, NMR, MINIMIZED AVERAGE STRUCTURE (1997) (0)
- Nearest neighbor rules for RNA helix folding thermodynamics: improved end effects (2022) (0)
- RNA Helix Thermodynamics: The End Game (2021) (0)
- Faculty Opinions recommendation of Crystal structure of a self-spliced group II intron. (2008) (0)
- Structural features of a 3' splice site in influenza A: 39-nt hairpin (2015) (0)
- Mg2+ effects on a circle opening reaction of the self-splicing intervening sequence from Tetrahymena thermophila. (1989) (0)
- Stereochemical restraints for nucleic acids revisited (2019) (0)
- sPrODN1:RNA [5'-R(AAAGGAGGA)-3'/5'-D(CXXXXXX)-3'] (2003) (0)
- Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG (2004) (0)
- Faculty Opinions recommendation of Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation. (2011) (0)
- Faculty Opinions recommendation of NMR study of 100 kDa HCV IRES RNA using segmental isotope labeling. (2002) (0)
- The Structure of RNA Internal Loops with Tandem AG Pairs: 5'AAGU/3'UGAA (2010) (0)
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