Douwe van Sinderen
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Computer Science
Douwe van Sinderen's Degrees
- PhD Computer Science University of Amsterdam
- Masters Computer Science University of Amsterdam
- Bachelors Computer Science University of Amsterdam
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(Suggest an Edit or Addition)Douwe van Sinderen's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Composition, variability, and temporal stability of the intestinal microbiota of the elderly (2010) (1431)
- Genomics of Actinobacteria: Tracing the Evolutionary History of an Ancient Phylum (2007) (1016)
- Bacteria as vitamin suppliers to their host: a gut microbiota perspective. (2013) (996)
- The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota (2017) (882)
- Bifidobacteria and Their Role as Members of the Human Gut Microbiota (2016) (556)
- Diversity of Bifidobacteria within the Infant Gut Microbiota (2012) (529)
- Fermented functional foods based on probiotics and their biogenic metabolites. (2005) (450)
- Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection (2012) (438)
- Complete Genome Sequence of the Prototype Lactic Acid Bacterium Lactococcus lactis subsp. cremoris MG1363 (2007) (425)
- Stress Physiology of Lactic Acid Bacteria (2016) (351)
- Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor (2011) (344)
- B‐Group vitamin production by lactic acid bacteria – current knowledge and potential applications (2011) (342)
- Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging (2010) (321)
- Exploring the Diversity of the Bifidobacterial Population in the Human Intestinal Tract (2009) (300)
- Stable Engraftment of Bifidobacterium longum AH1206 in the Human Gut Depends on Individualized Features of the Resident Microbiome. (2016) (283)
- Characterization of the genetic locus responsible for the production of ABP-118, a novel bacteriocin produced by the probiotic bacterium Lactobacillus salivarius subsp. salivarius UCC118. (2002) (265)
- Assessing the Fecal Microbiota: An Optimized Ion Torrent 16S rRNA Gene-Based Analysis Protocol (2013) (262)
- Multireplicon genome architecture of Lactobacillus salivarius. (2006) (226)
- Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut (2015) (209)
- Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission (2017) (205)
- Riboflavin Production in Lactococcus lactis: Potential for In Situ Production of Vitamin-Enriched Foods (2004) (204)
- Insights into the taxonomy, genetics and physiology of bifidobacteria (2004) (202)
- Role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium–host interactions (2013) (201)
- The Bifidobacterium dentium Bd1 Genome Sequence Reflects Its Genetic Adaptation to the Human Oral Cavity (2009) (193)
- Genomic Encyclopedia of Type Strains of the Genus Bifidobacterium (2014) (192)
- Bacteriophages as biocontrol agents of food pathogens. (2011) (191)
- Exploring Vertical Transmission of Bifidobacteria from Mother to Child (2015) (184)
- Gut microbiota composition and Clostridium difficile infection in hospitalized elderly individuals: a metagenomic study (2016) (178)
- Screening for and Identification of Starch-, Amylopectin-, and Pullulan-Degrading Activities in Bifidobacterial Strains (2006) (175)
- Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria. (2012) (174)
- comK acts as an autoregulatory control switch in the signal transduction route to competence in Bacillus subtilis (1994) (167)
- The genus Lactobacillus--a genomic basis for understanding its diversity. (2007) (165)
- Analysis of bifidobacterial evolution using a multilocus approach. (2006) (162)
- Metabolic engineering of lactic acid bacteria for the production of nutraceuticals (2002) (161)
- Shaping the Future of Probiotics and Prebiotics. (2021) (157)
- Bacteriophage Orphan DNA Methyltransferases: Insights from Their Bacterial Origin, Function, and Occurrence (2013) (151)
- Bacterial vitamin B2, B11 and B12 overproduction: An overview. (2009) (146)
- Glycan Utilization and Cross-Feeding Activities by Bifidobacteria. (2017) (145)
- Comparative and Functional Analysis of Sortase-Dependent Proteins in the Predicted Secretome of Lactobacillus salivarius UCC118 (2006) (145)
- Genomics of the Genus Bifidobacterium Reveals Species-Specific Adaptation to the Glycan-Rich Gut Environment (2015) (142)
- Characterization of bacteriocin‐like inhibitory substances (BLIS) from sourdough lactic acid bacteria and evaluation of their in vitro and in situ activity (2004) (141)
- Comparative genomics reveals close genetic relationships between phages from dairy bacteria and pathogenic Streptococci: evolutionary implications for prophage-host interactions. (2001) (140)
- Identification of universal gut microbial biomarkers of common human intestinal diseases by meta‐analysis (2017) (140)
- Cross-feeding by Bifidobacterium breve UCC2003 during co-cultivation with Bifidobacterium bifidum PRL2010 in a mucin-based medium (2014) (139)
- Genomics and ecological overview of the genus Bifidobacterium. (2011) (138)
- Multivitamin production in Lactococcus lactis using metabolic engineering. (2004) (136)
- Two groups of bacteriophages infecting Streptococcus thermophilus can be distinguished on the basis of mode of packaging and genetic determinants for major structural proteins (1997) (135)
- Deciphering bifidobacterial-mediated metabolic interactions and their impact on gut microbiota by a multi-omics approach (2016) (133)
- Characterization of virus-like particles associated with the human faecal and caecal microbiota. (2014) (133)
- Diversity of the genus Lactobacillus revealed by comparative genomics of five species. (2006) (127)
- The Dilemma of Phage Taxonomy Illustrated by Comparative Genomics of Sfi21-Like Siphoviridae in Lactic Acid Bacteria (2002) (123)
- Diversity, ecology and intestinal function of bifidobacteria (2014) (122)
- High Resolution In Vivo Bioluminescent Imaging for the Study of Bacterial Tumour Targeting (2012) (121)
- Bifidobacterium asteroides PRL2011 Genome Analysis Reveals Clues for Colonization of the Insect Gut (2012) (121)
- Insights into the biodiversity of the gut microbiota of broiler chickens. (2016) (119)
- Biotechnological production of vitamin B2-enriched bread and pasta. (2011) (119)
- Lactobacillus phylogenomics--towards a reclassification of the genus. (2008) (119)
- Sequence analysis and characterization of phi O1205, a temperate bacteriophage infecting Streptococcus thermophilus CNRZ1205. (1997) (116)
- Feeding the microbiota: transducer of nutrient signals for the host (2017) (114)
- Comparative genomics of the genus Bifidobacterium. (2010) (114)
- Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003 (2009) (112)
- Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism (2012) (112)
- Meta‐analysis of the human gut microbiome from urbanized and pre‐agricultural populations (2017) (111)
- Metabolism of Sialic Acid by Bifidobacterium breve UCC2003 (2014) (111)
- An analysis of bacteriocins produced by lactic acid bacteria isolated from malted barley (2001) (109)
- The Surface-Associated Exopolysaccharide of Bifidobacterium longum 35624 Plays an Essential Role in Dampening Host Proinflammatory Responses and Repressing Local TH17 Responses (2016) (109)
- Mucosal microbiota of intestinal polyps reveals putative biomarkers of colorectal cancer (2018) (108)
- Improvement and Optimization of Two Engineered Phage Resistance Mechanisms in Lactococcus lactis (2001) (108)
- Bifidobacterium breve UCC2003 metabolises the human milk oligosaccharides lacto-N-tetraose and lacto-N-neo-tetraose through overlapping, yet distinct pathways (2016) (105)
- Investigation of the Evolutionary Development of the Genus Bifidobacterium by Comparative Genomics (2014) (104)
- Characterization of ApuB, an Extracellular Type II Amylopullulanase from Bifidobacterium breve UCC2003 (2008) (103)
- Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium (2011) (103)
- Human milk oligosaccharides: Shaping the infant gut microbiota and supporting health (2020) (102)
- Microbial diversity in the human intestine and novel insights from metagenomics. (2009) (102)
- A general method for selection of riboflavin-overproducing food grade micro-organisms (2006) (102)
- Bifidobacterium lactis DSM 10140: Identification of the atp (atpBEFHAGDC) Operon and Analysis of Its Genetic Structure, Characteristics, and Phylogeny (2004) (102)
- Characterization of the groEL and groES Loci in Bifidobacterium breve UCC 2003: Genetic, Transcriptional, and Phylogenetic Analyses (2004) (102)
- Transcriptional Regulation and Characterization of a Novel β-Fructofuranosidase-Encoding Gene from Bifidobacterium breve UCC2003 (2005) (100)
- Bacteriophage Tuc2009 Encodes a Tail-Associated Cell Wall-Degrading Activity (2004) (99)
- Elucidating the gut microbiome of ulcerative colitis: bifidobacteria as novel microbial biomarkers. (2016) (98)
- Orally administered bifidobacteria as vehicles for delivery of agents to systemic tumors. (2010) (97)
- Genomic diversity and distribution of Bifidobacterium longum subsp. longum across the human lifespan (2018) (92)
- Bifidobacterium bifidum as an example of a specialized human gut commensal (2014) (92)
- Investigation of the Relationship between Lactococcal Host Cell Wall Polysaccharide Genotype and 936 Phage Receptor Binding Protein Phylogeny (2013) (92)
- Metagenomic Approaches to Assess Bacteriophages in Various Environmental Niches (2017) (92)
- From bacterial genome to functionality; case bifidobacteria. (2007) (91)
- Bifidobacteria and humans: our special friends, from ecological to genomics perspectives. (2014) (90)
- Progress in genomics, metabolism and biotechnology of bifidobacteria. (2011) (90)
- Unveiling the gut microbiota composition and functionality associated with constipation through metagenomic analyses (2017) (90)
- Isolation and characterisation of a novel bacteriocin produced by Bacillus thuringiensis strain B439. (2003) (89)
- Autolysis of Lactococcus lactis caused by induced overproduction of its major autolysin, AcmA (1997) (88)
- Unveiling bifidobacterial biogeography across the mammalian branch of the tree of life (2017) (88)
- Identification and Characterization of Lactococcal-Prophage-Carried Superinfection Exclusion Genes (2008) (88)
- MEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation. (2016) (88)
- The Lactococcal Phages Tuc2009 and TP901-1 Incorporate Two Alternate Forms of Their Tail Fiber into Their Virions for Infection Specialization* (2013) (87)
- Metabolism of a plant derived galactose‐containing polysaccharide by Bifidobacterium breve UCC2003 (2011) (87)
- Probing Direct Interactions between CodY and the oppD Promoter of Lactococcus lactis (2005) (86)
- Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems (2015) (86)
- Differences in Lactococcal Cell Wall Polysaccharide Structure Are Major Determining Factors in Bacteriophage Sensitivity (2014) (85)
- Functional Characterization of a Composite Bacteriocin Locus from Malt Isolate Lactobacillus sakei 5 (2003) (84)
- The Riboflavin Transporter RibU in Lactococcus lactis: Molecular Characterization of Gene Expression and the Transport Mechanism (2006) (84)
- Six putative two-component regulatory systems isolated from Lactococcus lactis subsp. cremoris MG1363. (2000) (84)
- Obesity and microbiota: an example of an intricate relationship (2017) (83)
- Identification and Characterization of a Fructose Phosphotransferase System in Bifidobacterium breve UCC2003 (2006) (82)
- Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis (2016) (81)
- Gene Structure and Transcriptional Organization of the dnaK Operon of Bifidobacterium breve UCC 2003 and Application of the Operon in Bifidobacterial Tracing (2005) (80)
- Lactobacillus rossii sp. nov., isolated from wheat sourdough. (2005) (79)
- The infant gut microbiome as a microbial organ influencing host well-being (2020) (77)
- Omics of bifidobacteria: research and insights into their health-promoting activities. (2017) (76)
- Bile-Inducible Efflux Transporter from Bifidobacterium longum NCC2705, Conferring Bile Resistance (2009) (76)
- Insights from genomes of representatives of the human gut commensal Bifidobacterium bifidum. (2015) (76)
- Development of a luciferase-based reporter system to monitor Bifidobacterium breve UCC2003 persistence in mice (2008) (75)
- Anatomy of a Lactococcal Phage Tail (2006) (75)
- Evaluation of bifidobacterial community composition in the human gut by means of a targeted amplicon sequencing (ITS) protocol. (2014) (74)
- Comparative and functional genomics of the Lactococcus lactis taxon; insights into evolution and niche adaptation (2017) (73)
- Sequence and comparative genomic analysis of lactococcal bacteriophages jj50, 712 and P008: evolutionary insights into the 936 phage species. (2006) (71)
- Genome Analysis and Characterisation of the Exopolysaccharide Produced by Bifidobacterium longum subsp. longum 35624™ (2016) (71)
- In situ activity of a bacteriocin‐producing Lactococcus lactis strain. Influence on the interactions between lactic acid bacteria during sourdough fermentation (2005) (70)
- Molecular Characterization of a Phage-Encoded Resistance System in Lactococcus lactis (1999) (70)
- Cellodextrin Utilization by Bifidobacterium breve UCC2003 (2011) (70)
- An Interactive Regulatory Network Controls Stress Response in Bifidobacterium breve UCC2003 (2009) (69)
- Comparative genomic and phylogenomic analyses of the Bifidobacteriaceae family (2017) (69)
- Comparative Genomics and Transcriptional Analysis of Prophages Identified in the Genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei (2006) (69)
- Occurrence and Diversity of CRISPR-Cas Systems in the Genus Bifidobacterium (2015) (68)
- Genomic Characterization and Transcriptional Studies of the Starch-Utilizing Strain Bifidobacterium adolescentis 22L (2014) (68)
- Structural Characterization and Assembly of the Distal Tail Structure of the Temperate Lactococcal Bacteriophage TP901-1 (2005) (68)
- Prevalence of Antibiotic Resistance Genes among Human Gut-Derived Bifidobacteria (2016) (68)
- Identification of the Lower Baseplate Protein as the Antireceptor of the Temperate Lactococcal Bacteriophages TP901-1 and Tuc2009 (2006) (67)
- Characterization of the Serpin-Encoding Gene of Bifidobacterium breve 210B (2010) (67)
- In Vitro Characteristics of Phages to Guide ‘Real Life’ Phage Therapy Suitability (2018) (67)
- Comparative Genomics of Bifidobacterium animalis subsp. lactis Reveals a Strict Monophyletic Bifidobacterial Taxon (2013) (67)
- Genetic strategies for mucin metabolism in Bifidobacterium bifidum PRL2010: An example of possible human-microbe co-evolution (2011) (67)
- How to Feed the Mammalian Gut Microbiota: Bacterial and Metabolic Modulation by Dietary Fibers (2017) (66)
- Carbohydrate catabolic diversity of bifidobacteria and lactobacilli of human origin. (2015) (66)
- In vitro inhibition of Eimeria tenella invasion by indigenous chicken Lactobacillus species. (2004) (66)
- Bioprotective potential of lactic acid bacteria in malting and brewing. (2008) (65)
- Genome Analysis of Food Grade Lactic Acid-Producing Bacteria: From Basics to Applications (2008) (65)
- Prophage-Like Elements in Bifidobacteria: Insights from Genomics, Transcription, Integration, Distribution, and Phylogenetic Analysis (2005) (64)
- Bifidobacterium bifidum PRL2010 Modulates the Host Innate Immune Response (2013) (63)
- Analysis of Predicted Carbohydrate Transport Systems Encoded by Bifidobacterium bifidum PRL2010 (2012) (63)
- The human gut microbiota and its interactive connections to diet. (2016) (63)
- Glycan cross-feeding activities between bifidobacteria under in vitro conditions (2015) (63)
- Rapid Differentiation and In Situ Detection of 16 Sourdough Lactobacillus Species by Multiplex PCR (2005) (62)
- Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains (2018) (61)
- A Topological Model of the Baseplate of Lactococcal Phage Tuc2009* (2008) (61)
- Prophages of the genus Bifidobacterium as modulating agents of the infant gut microbiota. (2016) (61)
- Bifidobacterium breve UCC2003 surface exopolysaccharide production is a beneficial trait mediating commensal-host interaction through immune modulation and pathogen protection (2012) (61)
- Genome analysis of the Clostridium difficile phage PhiCD6356, a temperate phage of the Siphoviridae family. (2010) (61)
- Cell Wall-Associated Proteases of Streptococcus cremoris Wg2 (1987) (60)
- How high G+C Gram-positive bacteria and in particular bifidobacteria cope with heat stress: protein players and regulators. (2006) (60)
- Ribose utilization by the human commensal Bifidobacterium breve UCC2003 (2010) (60)
- Identification of four loci isolated from two Streptococcus thermophilus phage genomes responsible for mediating bacteriophage resistance. (2000) (59)
- Lactobacillus rossiae, a Vitamin B12 Producer, Represents a Metabolically Versatile Species within the Genus Lactobacillus (2014) (59)
- Lactococcal Plasmid pNP40 Encodes a Novel, Temperature-Sensitive Restriction-Modification System (2004) (59)
- Comparative Analyses of Prophage-Like Elements Present in Bifidobacterial Genomes (2009) (58)
- Structural and functional analysis of pCI65st, a 6.5 kb plasmid from Streptococcus thermophilus NDI-6. (1999) (58)
- Characterization of Endogenous Plasmids from Lactobacillus salivarius UCC118 (2008) (58)
- Kefir fermented milk and kefiran promote growth of Bifidobacterium bifidum PRL2010 and modulate its gene expression. (2014) (58)
- Autoinducer-2 Plays a Crucial Role in Gut Colonization and Probiotic Functionality of Bifidobacterium breve UCC2003 (2014) (58)
- Characterization of Two Novel α-Glucosidases from Bifidobacterium breve UCC2003 (2008) (57)
- Current taxonomy of phages infecting lactic acid bacteria (2013) (56)
- Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut (2012) (56)
- Distribution of Megaplasmids in Lactobacillus salivarius and Other Lactobacilli (2007) (55)
- The clpB gene of Bifidobacterium breve UCC 2003: transcriptional analysis and first insights into stress induction. (2005) (55)
- The Bacillus subtilis transition state regulator AbrB binds to the -35 promoter region of comK. (2003) (55)
- Lactococcal 936-type phages and dairy fermentation problems: from detection to evolution and prevention (2012) (55)
- The Atomic Structure of the Phage Tuc2009 Baseplate Tripod Suggests that Host Recognition Involves Two Different Carbohydrate Binding Modules (2016) (54)
- Exploiting Bifidobacterium genomes: the molecular basis of stress response. (2007) (53)
- Bifidobacterial Dialogue With Its Human Host and Consequent Modulation of the Immune System (2019) (53)
- Comparative genomics and functional analysis of the 936 group of lactococcal Siphoviridae phages (2016) (53)
- Bifidobacterium breve reduces apoptotic epithelial cell shedding in an exopolysaccharide and MyD88-dependent manner (2017) (53)
- The ClgR Protein Regulates Transcription of the clpP Operon in Bifidobacterium breve UCC 2003 (2005) (52)
- Identification and Analysis of a Novel Group of Bacteriophages Infecting the Lactic Acid Bacterium Streptococcus thermophilus (2016) (52)
- Identification of a New P335 Subgroup through Molecular Analysis of Lactococcal Phages Q33 and BM13 (2013) (52)
- The Lactococcus lactis plasmidome: much learnt, yet still lots to discover. (2014) (52)
- Molecular and transcriptional analysis of the temperate lactococcal bacteriophage Tuc2009. (2004) (51)
- Evaluation of adhesion properties and antibacterial activities of the infant gut commensal Bifidobacterium bifidum PRL2010. (2013) (51)
- Another Brick in the Wall: a Rhamnan Polysaccharide Trapped inside Peptidoglycan of Lactococcus lactis (2017) (50)
- Molecular Characterization of Cadmium Resistance in Streptococcus thermophilus Strain 4134: an Example of Lateral Gene Transfer (2002) (50)
- Expression of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in response to environmental gut conditions. (2014) (49)
- Metabolism of the predominant human milk oligosaccharide fucosyllactose by an infant gut commensal (2019) (49)
- Molecular Characterization of hsp20, Encoding a Small Heat Shock Protein of Bifidobacterium breve UCC2003 (2007) (49)
- Metagenomic dissection of the canine gut microbiota: insights into taxonomic, metabolic and nutritional features (2019) (49)
- Discovering Novel Bile Protection Systems in Bifidobacterium breve UCC2003 through Functional Genomics (2011) (48)
- Metabolism of Four α-Glycosidic Linkage-Containing Oligosaccharides by Bifidobacterium breve UCC2003 (2013) (48)
- Bacteriophages in dairy products: Pros and cons (2007) (48)
- Bifidobacterium bifidum: A Key Member of the Early Human Gut Microbiota (2019) (47)
- Structure and Functional Analysis of the Host Recognition Device of Lactococcal Phage Tuc2009 (2013) (47)
- Comparative Analyses of Prophage-Like Elements Present in Two Lactococcus lactis Strains (2007) (47)
- Investigation of Protein Export in Bifidobacterium breve UCC2003 (2003) (47)
- Ancient bacteria of the Ötzi’s microbiome: a genomic tale from the Copper Age (2017) (46)
- Viral infection modulation and neutralization by camelid nanobodies (2013) (46)
- The Streptococcus thermophilus Autolytic Phenotype Results from a Leaky Prophage (2000) (46)
- Two membrane proteins from Bifidobacterium breve UCC2003 constitute an ABC-type multidrug transporter. (2006) (46)
- Tracking the Taxonomy of the Genus Bifidobacterium Based on a Phylogenomic Approach (2017) (46)
- Transcriptional Regulation of Carbohydrate Utilization Pathways in the Bifidobacterium Genus (2016) (46)
- Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX (2018) (45)
- Modulation of the eps-ome transcription of bifidobacteria through simulation of human intestinal environment. (2016) (45)
- A Bifidobacterial pilus‐associated protein promotes colonic epithelial proliferation (2018) (45)
- Untangling the cecal microbiota of feral chickens by culturomic and metagenomic analyses (2017) (44)
- Klebsiella pneumoniae subsp. pneumoniae–bacteriophage combination from the caecal effluent of a healthy woman (2015) (44)
- Ability of Bifidobacterium breve To Grow on Different Types of Milk: Exploring the Metabolism of Milk through Genome Analysis (2011) (44)
- Complete Genome Sequence of Bifidobacterium bifidum S17 (2010) (43)
- Identification and characterization of an oleate hydratase-encoding gene from Bifidobacterium breve (2013) (42)
- Exploring Amino Acid Auxotrophy in Bifidobacterium bifidum PRL2010 (2015) (42)
- Solution and electron microscopy characterization of lactococcal phage baseplates expressed in Escherichia coli. (2010) (42)
- Progress in lactic acid bacterial phage research (2014) (42)
- Isolation of a virulent Lactobacillus brevis phage and its application in the control of beer spoilage. (2011) (42)
- Complete Genome of Lactococcus lactis subsp. cremoris UC509.9, Host for a Model Lactococcal P335 Bacteriophage (2013) (41)
- Bifidobacterium bifidum and the infant gut microbiota: an intriguing case of microbe-host co-evolution. (2019) (41)
- Insights into Physiological and Genetic Mupirocin Susceptibility in Bifidobacteria (2011) (41)
- Biodiversity of lactococcal bacteriophages isolated from 3 Gouda-type cheese-producing plants. (2013) (40)
- Next-generation sequencing as an approach to dairy starter selection (2015) (40)
- Comparative genome and methylome analysis reveals restriction/modification system diversity in the gut commensal Bifidobacterium breve (2017) (40)
- Molecular characterization of the lactococcal plasmid pCIS3: natural stacking of specificity subunits of a type I restriction/modification system in a single lactococcal strain. (2000) (40)
- Bifidobacteria: from ecology to genomics. (2009) (39)
- Transposon Mutagenesis in Bifidobacterium breve: Construction and Characterization of a Tn5 Transposon Mutant Library for Bifidobacterium breve UCC2003 (2013) (39)
- Ingestion of milk fermented by genetically modified Lactococcus lactis improves the riboflavin status of deficient rats. (2005) (39)
- Plantaricyclin A, a Novel Circular Bacteriocin Produced by Lactobacillus plantarum NI326: Purification, Characterization, and Heterologous Production (2017) (38)
- Isolation of novel gut bifidobacteria using a combination of metagenomic and cultivation approaches (2019) (38)
- Identification and characterization of a lysis module present in a large proportion of bacteriophages infecting Streptococcus thermophilus. (1999) (38)
- Phage-Host Interactions of Cheese-Making Lactic Acid Bacteria. (2016) (38)
- Genetic Characterization of the Bifidobacterium breve UCC 2003 hrcA Locus (2005) (37)
- The impact of bacteriophage genomics. (2004) (37)
- Lactococcal 949 Group Phages Recognize a Carbohydrate Receptor on the Host Cell Surface (2015) (37)
- The association between the maternal diet and the maternal and infant gut microbiome: a systematic review (2020) (37)
- Structural Aspects of the Interaction of Dairy Phages with Their Host Bacteria (2012) (37)
- Comparative genomics and genotype-phenotype associations in Bifidobacterium breve (2018) (36)
- Colonization of the human gut by bovine bacteria present in Parmesan cheese (2019) (35)
- Genetic and Transcriptional Organization of the clpC Locus in Bifidobacterium breve UCC 2003 (2005) (34)
- Combination of Multiplex PCR and PCR-Denaturing Gradient Gel Electrophoresis for Monitoring Common Sourdough-Associated Lactobacillus Species (2006) (34)
- Lactococcus lactis is capable of improving the riboflavin status in deficient rats (2005) (34)
- Lytic Infection of Lactococcus lactis by Bacteriophages Tuc2009 and c2 Triggers Alternative Transcriptional Host Responses (2013) (34)
- Phages of lactic acid bacteria: the role of genetics in understanding phage-host interactions and their co-evolutionary processes. (2012) (33)
- Unveiling Genomic Diversity among Members of the Species Bifidobacterium pseudolongum, a Widely Distributed Gut Commensal of the Animal Kingdom (2019) (33)
- Polyphasic analysis indicates that Lactobacillus salivarius subsp. salivarius and Lactobacillus salivarius subsp. salicinius do not merit separate subspecies status. (2006) (33)
- Comparative Genomics Reveals the Regulatory Complexity of Bifidobacterial Arabinose and Arabino-Oligosaccharide Utilization (2018) (33)
- Glycosulfatase-Encoding Gene Cluster in Bifidobacterium breve UCC2003 (2016) (32)
- Host recognition by lactic acid bacterial phages. (2017) (32)
- Novel strategies to prevent or exploit phages in fermentations, insights from phage-host interactions. (2015) (32)
- Molecular Dissection of a Bifidobacterial Replicon (2007) (32)
- A bile‐inducible membrane protein mediates bifidobacterial bile resistance (2012) (32)
- Complete Genome Sequence of Lactobacillus plantarum Strain 16, a Broad-Spectrum Antifungal-Producing Lactic Acid Bacterium (2013) (31)
- Global Survey and Genome Exploration of Bacteriophages Infecting the Lactic Acid Bacterium Streptococcus thermophilus (2017) (30)
- Transcription of Two Adjacent Carbohydrate Utilization Gene Clusters in Bifidobacterium breve UCC2003 Is Controlled by LacI- and Repressor Open Reading Frame Kinase (ROK)-Type Regulators (2014) (30)
- Lactobacillus hordei sp. nov., a bacteriocinogenic strain isolated from malted barley. (2008) (30)
- Identification of Restriction-Modification Systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT Sequencing and Associated Methylome Analysis (2014) (30)
- Characterization of plasmid pASV479 from Bifidobacterium pseudolongum subsp. globosum and its use for expression vector construction. (2007) (30)
- Expanding the molecular toolbox for Lactococcus lactis: construction of an inducible thioredoxin gene fusion expression system (2011) (29)
- Global Genome Transcription Profiling of Bifidobacterium bifidum PRL2010 under In Vitro Conditions and Identification of Reference Genes for Quantitative Real-Time PCR (2011) (29)
- A Decade of Streptococcus thermophilus Phage Evolution in an Irish Dairy Plant (2018) (29)
- Analysis of Selection Methods to Develop Novel Phage Therapy Cocktails Against Antimicrobial Resistant Clinical Isolates of Bacteria (2020) (29)
- Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium par (2018) (29)
- Characterization and induction of prophages in human gut-associated Bifidobacterium hosts (2018) (28)
- Functional carbohydrate binding modules identified in evolved dits from siphophages infecting various Gram‐positive bacteria (2018) (27)
- Deciphering the Bifidobacterial Populations within the Canine and Feline Gut Microbiota (2020) (27)
- A Two-Component Regulatory System Controls Autoregulated Serpin Expression in Bifidobacterium breve UCC2003 (2012) (27)
- An efficient and reproducible method for transformation of genetically recalcitrant bifidobacteria. (2012) (27)
- Ability of bifidobacteria to metabolize chitin-glucan and its impact on the gut microbiota (2019) (27)
- Fibrinogen‐binding and platelet‐aggregation activities of a Lactobacillus salivarius septicaemia isolate are mediated by a novel fibrinogen‐binding protein (2012) (26)
- Microbiota and Cancer: The Emerging Beneficial Role of Bifidobacteria in Cancer Immunotherapy (2020) (26)
- Genetic and functional characterisation of the lactococcal P335 phage-host interactions (2017) (26)
- The Sortase-Dependent Fimbriome of the Genus Bifidobacterium: Extracellular Structures with Potential To Modulate Microbe-Host Dialogue (2017) (25)
- The Impact of Primer Design on Amplicon-Based Metagenomic Profiling Accuracy: Detailed Insights into Bifidobacterial Community Structure (2020) (25)
- Macrolide Resistance Mediated by a Bifidobacterium breve Membrane Protein (2005) (25)
- Molecular Characterization of Three Lactobacillus delbrueckii subsp. bulgaricus Phages (2014) (25)
- Biodiversity of bacteriophages infecting Lactococcus lactis starter cultures. (2018) (25)
- Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov. (2019) (25)
- The impact of human-facilitated selection on the gut microbiota of domesticated mammals. (2019) (25)
- Next generation sequencing-based multigene panel for high throughput detection of food-borne pathogens. (2017) (24)
- Discovery of a Conjugative Megaplasmid in Bifidobacterium breve (2014) (24)
- Investigating bifidobacteria and human milk oligosaccharide composition of lactating mothers. (2020) (24)
- Complete Genome Sequence of Bifidobacterium animalis subsp. lactis BLC1 (2011) (24)
- Novel Phage Group Infecting Lactobacillus delbrueckii subsp. lactis, as Revealed by Genomic and Proteomic Analysis of Bacteriophage Ldl1 (2014) (24)
- The genus bifidobacterium: From genomics to functionality of an important component of the mammalian gut microbiota running title: Bifidobacterial adaptation to and interaction with the host (2021) (24)
- Global transcriptional landscape and promoter mapping of the gut commensal Bifidobacterium breve UCC2003 (2017) (24)
- Detecting Lactococcus lactis Prophages by Mitomycin C-Mediated Induction Coupled to Flow Cytometry Analysis (2017) (23)
- Exopolysaccharide from Bifidobacterium longum subsp. longum 35624™ modulates murine allergic airway responses. (2018) (23)
- Bifidobacterial biofilm formation is a multifactorial adaptive phenomenon in response to bile exposure (2020) (23)
- Sourdough authentication: quantitative PCR to detect the lactic acid bacterial microbiota in breads (2017) (23)
- Plant Glycan Metabolism by Bifidobacteria (2021) (23)
- Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome (2020) (23)
- Identification of TlpC, a novel 62 kDa MCP-like protein from Bacillus subtilis. (1994) (22)
- Cloning and sequence analysis of putative histidine protein kinases isolated from Lactococcus lactis MG1363 (1997) (22)
- Comparative genome analysis of the Lactobacillus brevis species (2019) (22)
- Catching a glimpse of the bacterial gut community of companion animals: a canine and feline perspective (2020) (22)
- Identification of iron-regulated genes of Bifidobacterium breve UCC2003 as a basis for controlled gene expression (2012) (22)
- Metagenomic Analysis of Dairy Bacteriophages: Extraction Method and Pilot Study on Whey Samples Derived from Using Undefined and Defined Mesophilic Starter Cultures (2017) (21)
- The essential genomic landscape of the commensal Bifidobacterium breve UCC2003 (2017) (21)
- Cloning, expression and characterization of a β-d-xylosidase from Lactobacillus rossiae DSM 15814T (2016) (21)
- METAnnotatorX2: a Comprehensive Tool for Deep and Shallow Metagenomic Data Set Analyses (2021) (21)
- Methyltransferases acquired by lactococcal 936-type phage provide protection against restriction endonuclease activity (2014) (21)
- Ecological Importance of Cross-Feeding of the Intermediate Metabolite 1,2-Propanediol between Bacterial Gut Symbionts (2020) (21)
- In Silico Assigned Resistance Genes Confer Bifidobacterium with Partial Resistance to Aminoglycosides but Not to Β-Lactams (2013) (21)
- Construction of two Lactococcus lactis expression vectors combining the Gateway and the NIsin Controlled Expression systems. (2011) (20)
- Transcriptional analysis of bacteriocin production by malt isolate Lactobacillus sakei 5. (2004) (20)
- A Conserved Two-Component Signal Transduction System Controls the Response to Phosphate Starvation in Bifidobacterium breve UCC2003 (2012) (20)
- Productive mRNA stem loop-mediated transcriptional slippage: Crucial features in common with intrinsic terminators (2015) (20)
- Compositional assessment of bacterial communities in probiotic supplements by means of metagenomic techniques. (2019) (20)
- Phylotype-Level Profiling of Lactobacilli in Highly Complex Environments by Means of an Internal Transcribed Spacer-Based Metagenomic Approach (2018) (20)
- Determination of the cell wall polysaccharide and teichoic acid structures from Lactococcus lactis IL1403. (2018) (19)
- A comprehensive review on the impact of β-glucan metabolism by Bacteroides and Bifidobacterium species as members of the gut microbiota. (2021) (19)
- Identification and Characterization of a Lysis Module Present in a Large Proportion of Bacteriophages InfectingStreptococcus thermophilus (1999) (19)
- Carbohydrate Syntrophy enhances the establishment of Bifidobacterium breve UCC2003 in the neonatal gut (2018) (19)
- Assessing the functionality and genetic diversity of lactococcal prophages. (2018) (19)
- Mobilome and Resistome Reconstruction from Genomes Belonging to Members of the Bifidobacterium Genus (2019) (19)
- A dichotomous epigenetic mechanism governs expression of the LlaJI restriction/modification system (2005) (19)
- Biocidal Inactivation of Lactococcus lactis Bacteriophages: Efficacy and Targets of Commonly Used Sanitizers (2017) (19)
- Characterization of the lytic-lysogenic switch of the lactococcal bacteriophage Tuc2009. (2006) (19)
- Structure and Assembly of TP901-1 Virion Unveiled by Mutagenesis (2015) (18)
- Exploration of the Genomic Diversity and Core Genome of the Bifidobacterium adolescentis Phylogenetic Group by Means of a Polyphasic Approach (2012) (18)
- Phage Biodiversity in Artisanal Cheese Wheys Reflects the Complexity of the Fermentation Process (2017) (18)
- A GntR-type transcriptional repressor controls sialic acid utilization in Bifidobacterium breve UCC2003. (2015) (18)
- Bifidobacterium bifidum PRL2010 alleviates intestinal ischemia/reperfusion injury (2018) (18)
- Identification of Two-Component Regulatory Systems in Bifidobacterium infantis by Functional Complementation and Degenerate PCR Approaches (2003) (18)
- Glycoside hydrolase family 13 α-glucosidases encoded by Bifidobacterium breve UCC2003; A comparative analysis of function, structure and phylogeny. (2016) (18)
- The human gut microbiota during the initial stages of life: insights from bifidobacteria. (2021) (17)
- Investigating the requirement for calcium during lactococcal phage infection. (2015) (17)
- Bifidobacterium breve UCC2003 Employs Multiple Transcriptional Regulators To Control Metabolism of Particular Human Milk Oligosaccharides (2018) (17)
- Exploring the Ecology of Bifidobacteria and Their Genetic Adaptation to the Mammalian Gut (2020) (16)
- Bifidobacterium breve UCC2003 Exopolysaccharide Modulates the Early Life Microbiota by Acting as a Potential Dietary Substrate (2020) (16)
- Structural studies of the cell wall polysaccharide from Lactococcus lactis UC509.9. (2018) (16)
- Vaginotypes of the human vaginal microbiome. (2021) (16)
- Generation of Bacteriophage-Insensitive Mutants of Streptococcus thermophilus via an Antisense RNA CRISPR-Cas Silencing Approach (2017) (16)
- Characterisation of a Hydroxycinnamic Acid Esterase From the Bifidobacterium longum subsp. longum Taxon (2018) (16)
- Biochemical analysis of cross‐feeding behaviour between two common gut commensals when cultivated on plant‐derived arabinogalactan (2020) (15)
- A dual-chain assembly pathway generates the high structural diversity of cell-wall polysaccharides in Lactococcus lactis (2019) (15)
- Transcriptional control of central carbon metabolic flux in Bifidobacteria by two functionally similar, yet distinct LacI-type regulators (2019) (15)
- Transcriptomic and morphological profiling of Aspergillus fumigatus Af293 in response to antifungal activity produced by Lactobacillus plantarum 16. (2013) (15)
- Metabolism of biosynthetic oligosaccharides by human-derived Bifidobacterium breve UCC2003 and Bifidobacterium longum NCIMB 8809. (2019) (15)
- The Plasmid Complement of Lactococcus lactis UC509.9 Encodes Multiple Bacteriophage Resistance Systems (2014) (15)
- Characterization of GH2 and GH42 β-galactosidases derived from bifidobacterial infant isolates (2019) (15)
- Revisiting the host adhesion determinants of Streptococcus thermophilus siphophages (2020) (14)
- Ubiquitous Carbohydrate Binding Modules Decorate 936 Lactococcal Siphophage Virions (2019) (14)
- Galacto-oligosaccharides as infant prebiotics: production, application, bioactive activities and future perspectives (2021) (14)
- Lactococcus lactis phage TP901–1 as a model for Siphoviridae virion assembly (2016) (14)
- A cell wall‐associated polysaccharide is required for bacteriophage adsorption to the Streptococcus thermophilus cell surface (2020) (13)
- The Lactococcus lactis Pan-Plasmidome (2019) (13)
- Impact of a bathing tradition on shared gut microbe among Japanese families (2019) (13)
- Identification and characterisation of a gene encoding aminoacylase activity from Lactococcus lactis MG1363. (2000) (13)
- Multi-population cohort meta-analysis of human intestinal microbiota in early life reveals the existence of infant community state types (ICSTs) (2020) (13)
- Genome-Wide Search for Genes Required for Bifidobacterial Growth under Iron-Limitation (2017) (13)
- Reconstruction of the Bifidobacterial Pan-Secretome Reveals the Network of Extracellular Interactions between Bifidobacteria and the Infant Gut (2018) (13)
- Gram-positive phage-host interactions (2015) (12)
- Development of a beta-galactosidase alpha-complementation system for molecular cloning in Bacillus subtilis. (1990) (12)
- Multi-omics Approaches To Decipher the Impact of Diet and Host Physiology on the Mammalian Gut Microbiome (2020) (12)
- A microbiome reality check: limitations of in silico-based metagenomic approaches to study complex bacterial communities. (2019) (11)
- Intertwinement of stress response regulons in Bifidobacterium breve UCC2003 (2010) (11)
- Genome Sequence of Parascardovia denticolens IPLA 20019, Isolated from Human Breast Milk (2012) (11)
- The CWPS Rubik’s cube: Linking diversity of cell wall polysaccharide structures with the encoded biosynthetic machinery of selected Lactococcus lactis strains (2020) (11)
- Identification of Dual Receptor Binding Protein Systems in Lactococcal 936 Group Phages (2018) (11)
- Lactic Acid Bacteria Diversity and Characterization of Probiotic Candidates in Fermented Meats (2021) (11)
- Dissecting the Evolutionary Development of the Species Bifidobacterium animalis through Comparative Genomics Analyses (2019) (10)
- Bifidobacterial Transfer from Mother to Child as Examined by an Animal Model (2019) (10)
- Priority effects shape the structure of infant-type Bifidobacterium communities on human milk oligosaccharides (2022) (10)
- Bifidobacterium breve UCC2003 Induces a Distinct Global Transcriptomic Program in Neonatal Murine Intestinal Epithelial Cells (2020) (10)
- Insights into endogenous Bifidobacterium species in the human gut microbiota during adulthood. (2022) (10)
- Insights into teichoic acid biosynthesis by Bifidobacterium bifidum PRL2010. (2015) (10)
- Evolutionary development and co-phylogeny of primate-associated bifidobacteria. (2020) (10)
- A Plasmid-Encoded Putative Glycosyltransferase Is Involved in Hop Tolerance and Beer Spoilage in Lactobacillus brevis (2019) (10)
- Specific reverse transcriptase slippage at the HIV ribosomal frameshift sequence: potential implications for modulation of GagPol synthesis (2017) (10)
- Structural investigation of cell wall polysaccharides of Lactobacillus delbrueckii subsp. bulgaricus 17. (2015) (9)
- Genome Sequence of Serratia marcescens Phage BF (2017) (9)
- Evaluation of Modulatory Activities of Lactobacillus crispatus Strains in the Context of the Vaginal Microbiota (2022) (9)
- Maternal and infant factors that shape neonatal gut colonization by bacteria (2020) (9)
- Insertional mutagenesis of an industrial strain of Streptococcus thermophilus. (2001) (8)
- An improved beta-galactosidase alpha-complementation system for molecular cloning in Bacillus subtilis. (1990) (8)
- Beer spoilage and low pH tolerance is linked to manganese homeostasis in selected Lactobacillus brevis strains (2020) (8)
- Riboflavin Biosynthesis and Overproduction by a Derivative of the Human Gut Commensal Bifidobacterium longum subsp. infantis ATCC 15697 (2020) (8)
- Human milk oligosaccharide-sharing by a consortium of infant derived Bifidobacterium species (2022) (8)
- The Baseplate of Lactobacillus delbrueckii Bacteriophage Ld17 Harbors a Glycerophosphodiesterase* (2016) (8)
- Identification of DNA Base Modifications by Means of Pacific Biosciences RS Sequencing Technology. (2018) (8)
- Bifidobacterial Distribution Across Italian Cheeses Produced from Raw Milk (2019) (8)
- Stimulation of reverse transcriptase generated cDNAs with specific indels by template RNA structure: retrotransposon, dNTP balance, RT-reagent usage (2017) (7)
- Lysogenization of a Lactococcal Host with Three Distinct Temperate Phages Provides Homologous and Heterologous Phage Resistance (2020) (7)
- Bifidobacterium breve Exopolysaccharide Blocks Dendritic Cell Maturation and Activation of CD4+ T Cells (2021) (7)
- Uncovering Bifidobacteria via Targeted Sequencing of the Mammalian Gut Microbiota (2019) (7)
- High-Quality Draft Genome Sequence of Bifidobacterium longum E18, Isolated from a Healthy Adult (2013) (7)
- Phylogenomic disentangling of the Bifidobacterium longum subsp. infantis taxon (2021) (7)
- Erratum to: Ancient bacteria of the Ötzi’s microbiome: a genomic tale from the Copper Age (2017) (7)
- Maternal gut microbiota Bifidobacterium promotes placental morphogenesis, nutrient transport and fetal growth in mice (2021) (7)
- Complete Genome Sequence of Lactococcus lactis subsp. cremoris 3107, Host for the Model Lactococcal P335 Bacteriophage TP901-1 (2019) (7)
- Untangling Species-Level Composition of Complex Bacterial Communities through a Novel Metagenomic Approach (2020) (7)
- Genome Sequence of Bifidobacterium breve DPC 6330, a Strain Isolated from the Human Intestine (2011) (7)
- Characterisation of Streptococcus thermophilus CNRZ1205 and its cured and re-lysogenised derivatives. (1999) (7)
- The Infant-Derived Bifidobacterium bifidum Strain CNCM I-4319 Strengthens Gut Functionality (2020) (6)
- Three distinct glycosylation pathways are involved in the decoration of Lactococcus lactis cell wall glycopolymers (2020) (6)
- Identification of a phosphofructokinase-encoding gene from Streptococcus thermophilus CNRZ1205 – a novel link between carbon metabolism and gene regulation? (2002) (6)
- Ecology of Lactobacilli Present in Italian Cheeses Produced from Raw Milk (2020) (6)
- Genome Sequences of Eight Prophages Isolated from Lactococcus lactis Dairy Strains (2016) (6)
- Infant-Associated Bifidobacterial β-Galactosidases and Their Ability to Synthesize Galacto-Oligosaccharides (2021) (6)
- Health benefits conferred by the human gut microbiota during infancy (2018) (6)
- The Impact and Applications of Phages in the Food Industry and Agriculture (2020) (6)
- The Genome Sequence of Bifidobacterium moukalabense DSM 27321 Highlights the Close Phylogenetic Relatedness with the Bifidobacterium dentium Taxon (2014) (6)
- Genetic insights into the dark matter of the mammalian gut microbiota through targeted genome reconstruction (2021) (5)
- Virome studies of food production systems: time for 'farm to fork' analyses. (2021) (5)
- Biodiversity and Classification of Phages Infecting Lactobacillus brevis (2019) (5)
- Can a probiotic supplement in pregnancy result in transfer to the neonatal gut: A systematic review (2020) (5)
- Evidence for cholesterol-lowering activity by Bifidobacterium bifidum PRL2010 through gut microbiota modulation (2015) (4)
- The Probiotic Identity Card: A Novel “Probiogenomics” Approach to Investigate Probiotic Supplements (2022) (4)
- A structural discovery journey of streptococcal phages adhesion devices by AlphaFold2 (2022) (4)
- Amoxicillin-Clavulanic Acid Resistance in the Genus Bifidobacterium (2021) (4)
- Author Correction: Impact of a bathing tradition on shared gut microbes among Japanese families (2020) (4)
- Needle in a Whey-Stack: PhRACS as a Discovery Tool for Unknown Phage-Host Combinations (2022) (3)
- Genetic Dissection of a Prevalent Plasmid-Encoded Conjugation System in Lactococcus lactis (2021) (3)
- Three distinct glycosylation pathways are involved in the decoration of Lactococcus lactis cell wall glycopolymers. (2020) (3)
- Envisioning emerging frontiers on human gut microbiota and its applications (2020) (3)
- Staying alive: growth and survival of Bifidobacterium animalis subsp. animalis under in vitro and in vivo conditions (2018) (3)
- Deciphering the impact of diet and host physiology on the mammalian gut microbiome by multi-omics approaches. (2020) (3)
- Diet and mental health in pregnancy: Nutrients of importance based on large observational cohort data. (2022) (3)
- Mapping bacterial diversity and metabolic functionality of the human respiratory tract microbiome (2022) (3)
- Extraction of the same novel homoglycan mixture from two different strains of Bifidobacterium animalis and three strains of Bifidobacterium breve. (2018) (3)
- Brussowvirus SW13 Requires a Cell Surface-Associated Polysaccharide To Recognize Its Streptococcus thermophilus Host (2021) (3)
- Editorial: Role of Bifidobacteria in Human and Animal Health and Biotechnological Applications (2021) (3)
- Natural Transformation in Gram-Positive Bacteria and Its Biotechnological Relevance to Lactic Acid Bacteria. (2022) (3)
- Biodiversity of Phages Infecting the Dairy Bacterium Streptococcus thermophilus (2021) (3)
- Comparative Genome Analyses of Lactobacillus crispatus Isolates from Different Ecological Niches Reveal an Adaptation of This Species to the Human Vaginal Environment (2021) (2)
- Comparative Genomics of Lactiplantibacillus plantarum: Insights Into Probiotic Markers in Strains Isolated From the Human Gastrointestinal Tract and Fermented Foods (2022) (2)
- Exploring species-level infant gut bacterial biodiversity by meta-analysis and formulation of an optimized cultivation medium (2022) (2)
- Recruiting and Engaging Women of Reproductive Age with Obesity: Insights from A Mixed-Methods Study within A Trial (2022) (2)
- Bifidobacterium breve UCC2003 induces a distinct global transcriptomic programme in neonatal murine intestinal epithelial cells (2020) (2)
- Designation of optimal reference strains representing the infant gut bifidobacterial species through a comprehensive multi‐omics approach (2022) (2)
- Author Correction: Metabolism of the predominant human milk oligosaccharide fucosyllactose by an infant gut commensal (2020) (2)
- Implementation of Transposon Mutagenesis in Bifidobacterium. (2019) (2)
- Exploring the Ecological Effects of Naturally Antibiotic-Insensitive Bifidobacteria in the Recovery of the Resilience of the Gut Microbiota during and after Antibiotic Treatment (2022) (2)
- Bifidobacteria: insights into the biology of a key microbial group of early life gut microbiota (2021) (2)
- Disclosing the Genomic Diversity among Members of the Bifidobacterium Genus of Canine and Feline Origin with Respect to Those from Human (2022) (2)
- Creating an atlas to visualize the biodiversity of the mammalian gut microbiota. (2021) (2)
- Tap water as a natural vehicle for microorganisms shaping the human gut microbiome (2022) (2)
- Determination of Bifidobacterial Carbohydrate Utilization Abilities and Associated Metabolic End Products. (2021) (1)
- Diversity of Human-Associated Bifidobacterial Prophage Sequences (2021) (1)
- Broad Purpose Vector for Site-Directed Insertional Mutagenesis in Bifidobacterium breve (2021) (1)
- Bifidobacteria and the infant gut: an example of co-evolution and natural selection (2017) (1)
- In Vitro and In Vivo Assessment of the Potential of Escherichia coli Phages to Treat Infections and Survive Gastric Conditions (2021) (1)
- Comparative and functional genomics of the Lactococcus lactis taxon; insights into evolution and niche adaptation (2017) (1)
- Tale of the unseen phage (2013) (1)
- Bifidobacterium breve UCC2003 exopolysaccharide modulates the early life microbiota by acting as a dietary substrate (2019) (1)
- Evaluation of amoxicillin-clavulanic acid resistance in the Bifidobacterium genus. (2021) (1)
- Bacteriophage-host interactions as a platform to establish the role of phages in modulating the microbial composition of fermented foods (2022) (1)
- Exploring Structural Diversity among Adhesion Devices Encoded by Lactococcal P335 Phages with AlphaFold2 (2022) (1)
- Measuring Conjugated Linoleic Acid (CLA) Production by Bifidobacteria. (2021) (1)
- Simultaneous Production of Multiple Antimicrobial Compounds by Bacillus velezensis ML122-2 Isolated From Assam Tea Leaf [Camellia sinensis var. assamica (J.W.Mast.) Kitam.] (2021) (1)
- The impact of probiotic supplementation on metabolic health in healthy women of reproductive age: a systematic review. (2020) (1)
- Site-Directed Mutagenesis of Bifidobacterium Strains. (2021) (1)
- Protocol to Select Bifidobacteria from Fecal and Environmental Samples. (2021) (1)
- Obesity and microbiota: an example of an intricate relationship (2017) (1)
- wiNovel Siphoviridae phage PMBT4 belonging to the group b Lactobacillus delbrueckii subsp. bulgaricus phages. (2021) (1)
- Complete Genome Sequence of the 936-Type Lactococcal Bacteriophage CaseusJM1 (2013) (1)
- Bifidobacterium Transformation. (2021) (1)
- Isolation of novel gut bifidobacteria using a combination of metagenomic and cultivation approaches (2019) (0)
- Comparative genomics and genotype-phenotype associations in Bifidobacterium breve (2018) (0)
- Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspective (2013) (0)
- Impact of a bathing tradition on shared gut microbes among Japanese families (2019) (0)
- IDF21-0594 Higher C3 complement protein is associated with cardiometabolic phenotype and biochemical health in women with obesity (2022) (0)
- New research frontiers pertaining to the infant gut microbiota (2022) (0)
- Bifidobacterial biofilm formation is a multifactorial adaptive phenomenon in response to bile exposure (2020) (0)
- The essential genomic landscape of the commensal Bifidobacterium breve UCC2003 (2017) (0)
- Erratum to: Ancient bacteria of the Ötzi’s microbiome: a genomic tale from the Copper Age (2017) (0)
- Characterization and induction of prophages in human gut-associated Bifidobacterium hosts (2018) (0)
- Molecular analysis of the replication functions of the bifidobacterial conjugative megaplasmid pMP7017 (2021) (0)
- Ancient bacteria of the Ötzi’s microbiome: a genomic tale from the Copper Age (2017) (0)
- Selected aspects of the human gut microbiota (2017) (0)
- Bifidobacterial β-Galactosidase-Mediated Production of Galacto-Oligosaccharides: Structural and Preliminary Functional Assessments (2021) (0)
- Isolation of Chromosomal and Plasmid DNA from Bifidobacteria. (2021) (0)
- Methyltransferases acquired by lactococcal 936-type phage provide protection against restriction endonuclease activity (2014) (0)
- Genomic diversity and distribution of Bifidobacterium longum subsp. longum across the human lifespan (2018) (0)
- Author Correction: Impact of a bathing tradition on shared gut microbes among Japanese families (2020) (0)
- Genetic and functional characterisation of the lactococcal P335 phage-host interactions (2017) (0)
- Phageome Analysis of Bifidobacteria-Rich Samples. (2021) (0)
- Global transcriptional landscape and promoter mapping of the gut commensal Bifidobacterium breve UCC2003 (2017) (0)
- Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems (2015) (0)
- Bifidobacterium Genome Assembly and Methylome Analysis Using Pacbio SMRT Sequencing. (2021) (0)
- A Resource for Cloning and Expression Vectors Designed for Bifidobacteria: Overview of Available Tools and Biotechnological Applications. (2021) (0)
- Bacteriophages in the Dairy Industry: A Problem Solved? (2022) (0)
- A Proposed Framework to Identify Dispensable and Essential Functions in Bifidobacteria: Case Study of Bifidobacterium breve UCC2003 as a Prototype of Its Genus. (2021) (0)
- Colonization of the human gut by bovine bacteria present in Parmesan cheese (2019) (0)
- Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX (2018) (0)
- Impact of gut-associated bifidobacteria and their phages on health: two sides of the same coin? (2018) (0)
- Cross-feeding by Bifidobacterium breve UCC2003 during co-cultivation with Bifidobacterium bifidum PRL2010 in a mucin-based medium (2014) (0)
- Comparative genomic and phylogenomic analyses of the Bifidobacteriaceae family (2017) (0)
- Unveiling the gut microbiota composition and functionality associated with constipation through metagenomic analyses (2017) (0)
- Contribution of the capsular polysaccharide layer to antibiotic resistance in bifidobacteria. (2023) (0)
- Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission (2017) (0)
- Ability of bifidobacteria to metabolize chitin-glucan and its impact on the gut microbiota (2019) (0)
- Comparative genome analysis of the Lactobacillus brevis species (2019) (0)
- Maximum depth sequencing reveals an ON/OFF replication slippage switch and apparent in vivo selection for bifidobacterial pilus expression (2022) (0)
- Delineation of a lactococcal conjugation system reveals a restriction-modification evasion system. (2023) (0)
- FANGORN: A quality-checked and publicly available database of full-length 16S-ITS-23S rRNA operon sequences (2022) (0)
- Special Issue “Bifidobacteria: Insights from Ecology to Genomics of a Key Microbial Group of the Mammalian Gut Microbiota” (2020) (0)
- Sourdough authentication: quantitative PCR to detect the lactic acid bacterial microbiota in breads (2017) (0)
- Higher Inflammation Is Associated with Cardiometabolic Phenotype and Biochemical Health in Women with Obesity (2022) (0)
- Mucosal microbiota of intestinal polyps reveals putative biomarkers of colorectal cancer (2018) (0)
- Ability of Bifidobacterium breve 702258 to transfer from mother to infant: the MicrobeMom randomised controlled trial. (2023) (0)
- Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains (2018) (0)
- Broad-spectrum antifungal-producing lactic acid bacteria and their application in fruit models (2012) (0)
- Dairy streptococcal cell wall and exopolysaccharide genome diversity (2022) (0)
- Carbohydrate Syntrophy enhances the establishment of Bifidobacterium breve UCC2003 in the neonatal gut (2018) (0)
- Identification of a prototype human gut Bifidobacterium longum subsp. longum strain based on comparative and functional genomic approaches (2023) (0)
- Staying alive: growth and survival of Bifidobacterium animalis subsp. animalis under in vitro and in vivo conditions (2018) (0)
- Characterization of GH2 and GH42 β-galactosidases derived from bifidobacterial infant isolates (2019) (0)
- Host genetic requirements for DNA release of lactococcal phage TP901‐1 (2022) (0)
- Bipartite rgp Locus Diversity in Streptococcus thermophilus Corresponds to Backbone and Side Chain Differences of Its Rhamnose-Containing Cell Wall Polysaccharide (2022) (0)
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