Edward C. Holmes
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British biologist
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Why Is Edward C. Holmes Influential?
(Suggest an Edit or Addition)According to Wikipedia, Edward Charles Holmes is a British evolutionary biologist and virologist. Since 2012, he has been a fellow of the National Health and Medical Research Council in Australia and professor at the University of Sydney. He was an honorary visiting professor at Fudan University in Shanghai, China, from 2019-2021.
Edward C. Holmes's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding (2020) (9473)
- A new coronavirus associated with human respiratory disease in China (2020) (8904)
- The proximal origin of SARS-CoV-2 (2020) (3890)
- A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology (2020) (1898)
- A Metagenomic Survey of Microbes in Honey Bee Colony Collapse Disorder (2007) (1643)
- Classification of hepatitis C virus into six major genotypes and a series of subtypes by phylogenetic analysis of the NS-5 region. (1993) (1447)
- Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins (2020) (1437)
- Rates of evolutionary change in viruses: patterns and determinants (2008) (1322)
- Unifying the Epidemiological and Evolutionary Dynamics of Pathogens (2004) (1208)
- New World Bats Harbor Diverse Influenza A Viruses (2013) (1168)
- A proposed system for the nomenclature of hepatitis C viral genotypes (1994) (1100)
- Redefining the invertebrate RNA virosphere (2016) (1054)
- HIV evolution: CTL escape mutation and reversion after transmission (2004) (921)
- The genomic and epidemiological dynamics of human influenza A virus (2008) (897)
- Cross-Species Virus Transmission and the Emergence of New Epidemic Diseases (2008) (678)
- Rates of Molecular Evolution in RNA Viruses: A Quantitative Phylogenetic Analysis (2002) (635)
- A Genomic Perspective on the Origin and Emergence of SARS-CoV-2 (2020) (622)
- The causes and consequences of HIV evolution (2004) (583)
- Evolutionary aspects of recombination in RNA viruses. (1999) (579)
- The origin, emergence and evolutionary genetics of dengue virus. (2003) (570)
- Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses (2015) (557)
- Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool (2021) (537)
- Why do RNA viruses recombine? (2011) (528)
- Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences. (2001) (523)
- The evolution of epidemic influenza (2007) (512)
- Clustered Mutations in HIV-1 Gag Are Consistently Required for Escape from Hla-B27–Restricted Cytotoxic T Lymphocyte Responses (2001) (504)
- High rate of viral evolution associated with the emergence of carnivore parvovirus. (2005) (503)
- Selection for specific sequences in the external envelope protein of human immunodeficiency virus type 1 upon primary infection (1993) (494)
- The evolutionary history of vertebrate RNA viruses (2018) (478)
- A Novel Bat Coronavirus Closely Related to SARS-CoV-2 Contains Natural Insertions at the S1/S2 Cleavage Site of the Spike Protein (2020) (453)
- Establishment and cryptic transmission of Zika virus in Brazil and the Americas (2017) (450)
- Sequence variability in the 5' non-coding region of hepatitis C virus: identification of a new virus type and restrictions on sequence diversity. (1993) (449)
- The Epidemic Behavior of the Hepatitis C Virus (2001) (449)
- Analysis of a new hepatitis C virus type and its phylogenetic relationship to existing variants. (1992) (446)
- Host Species Barriers to Influenza Virus Infections (2006) (423)
- The extent of codon usage bias in human RNA viruses and its evolutionary origin. (2003) (415)
- Extinction rates can be estimated from molecular phylogenies. (1994) (406)
- Whole-Genome Analysis of Human Influenza A Virus Reveals Multiple Persistent Lineages and Reassortment among Recent H3N2 Viruses (2005) (397)
- Phylogenetic evidence for recombination in dengue virus. (1999) (384)
- The Evolutionary Genetics and Emergence of Avian Influenza Viruses in Wild Birds (2008) (383)
- Co-circulation of three camel coronavirus species and recombination of MERS-CoVs in Saudi Arabia (2016) (369)
- The population genetics and evolutionary epidemiology of RNA viruses (2004) (368)
- RNA Viruses in Hymenopteran Pollinators: Evidence of Inter-Taxa Virus Transmission via Pollen and Potential Impact on Non-Apis Hymenopteran Species (2010) (358)
- Population Structure and Evolution of the Bacillus cereus Group (2004) (349)
- Yersinia pestis and the plague of Justinian 541-543 AD: a genomic analysis. (2014) (348)
- Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus (2017) (342)
- Genome-Scale Phylogenetic Analyses of Chikungunya Virus Reveal Independent Emergences of Recent Epidemics and Various Evolutionary Rates (2010) (342)
- A single positively selected West Nile viral mutation confers increased virogenesis in American crows (2007) (338)
- Immune Selection for Altered Antigen Processing Leads to Cytotoxic T Lymphocyte Escape in Chronic HIV-1 Infection (2004) (330)
- Population dynamics of flaviviruses revealed by molecular phylogenies. (1996) (327)
- Virus genomes reveal factors that spread and sustained the Ebola epidemic (2017) (319)
- Recombination in evolutionary genomics. (2002) (310)
- Identification of genotypes of hepatitis C virus by sequence comparisons in the core, E1 and NS-5 regions. (1994) (297)
- Out of Africa: A Molecular Perspective on the Introduction of Yellow Fever Virus into the Americas (2007) (284)
- Investigation of the pattern of hepatitis C virus sequence diversity in different geographical regions: implications for virus classification. The International HCV Collaborative Study Group. (1995) (279)
- Fever from the forest: prospects for the continued emergence of sylvatic dengue virus and its impact on public health (2011) (276)
- Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses. (2003) (273)
- Ecology and evolution of rabies virus in Europe. (1999) (272)
- Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe (2012) (272)
- Multiple Reassortment Events in the Evolutionary History of H1N1 Influenza A Virus Since 1918 (2008) (272)
- S1 gene-based phylogeny of infectious bronchitis virus: An attempt to harmonize virus classification (2016) (268)
- Identification of 2019-nCoV related coronaviruses in Malayan pangolins in southern China (2020) (267)
- Phylogenetic Evidence for Rapid Rates of Molecular Evolution in the Single-Stranded DNA Begomovirus Tomato Yellow Leaf Curl Virus (2007) (265)
- Bats are a major natural reservoir for hepaciviruses and pegiviruses (2013) (265)
- Ancient co-speciation of simian foamy viruses and primates (2005) (262)
- Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone (2015) (262)
- Evolutionary Basis of Codon Usage and Nucleotide Composition Bias in Vertebrate DNA Viruses (2006) (261)
- Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling (2020) (256)
- Phylogenetic relationships and differential selection pressures among genotypes of dengue-2 virus. (2002) (254)
- Cross-protective immunity can account for the alternating epidemic pattern of dengue virus serotypes circulating in Bangkok (2006) (253)
- Avian influenza virus exhibits rapid evolutionary dynamics. (2006) (249)
- Tracking virus outbreaks in the twenty-first century (2018) (246)
- Using Time-Structured Data to Estimate Evolutionary Rates of Double-Stranded DNA Viruses (2010) (245)
- Convergent and divergent sequence evolution in the surface envelope glycoprotein of human immunodeficiency virus type 1 within a single infected patient. (1992) (244)
- Error thresholds and the constraints to RNA virus evolution (2003) (243)
- Genetic characterization of tick-borne flaviviruses: new insights into evolution, pathogenetic determinants and taxonomy. (2007) (238)
- Long-Term Transmission of Defective RNA Viruses in Humans and Aedes Mosquitoes (2006) (237)
- The origins of SARS-CoV-2: A critical review (2021) (235)
- The evolution of Ebola virus: Insights from the 2013–2016 epidemic (2016) (232)
- Inferring the rate and time-scale of dengue virus evolution. (2003) (229)
- Widespread intra-serotype recombination in natural populations of dengue virus. (1999) (228)
- A dynamic nomenclature proposal for SARS-CoV-2 to assist genomic epidemiology (2020) (227)
- Hantavirus evolution in relation to its rodent and insectivore hosts: no evidence for codivergence. (2008) (227)
- The influence of recombination on the population structure and evolution of the human pathogen Neisseria meningitidis. (1999) (227)
- Phylogeny and Origins of Hantaviruses Harbored by Bats, Insectivores, and Rodents (2013) (225)
- Insights into the Evolutionary History of an Emerging Livestock Pathogen: Porcine Circovirus 2 (2009) (222)
- A phylogenetic survey of recombination frequency in plant RNA viruses (2006) (221)
- Host and viral features of human dengue cases shape the population of infected and infectious Aedes aegypti mosquitoes (2013) (219)
- The origin and phylogeography of dog rabies virus. (2008) (218)
- On being the right size (2005) (215)
- Divergent Viruses Discovered in Arthropods and Vertebrates Revise the Evolutionary History of the Flaviviridae and Related Viruses (2015) (215)
- The Evolutionary Dynamics of Human Influenza B Virus (2008) (214)
- Clade Replacements in Dengue Virus Serotypes 1 and 3 Are Associated with Changing Serotype Prevalence (2005) (208)
- Identification of novel bat coronaviruses sheds light on the evolutionary origins of SARS-CoV-2 and related viruses (2021) (204)
- Selection-driven evolution of emergent dengue virus. (2003) (203)
- Genome-scale rates of evolutionary change in bacteria (2016) (202)
- Secondary structure of the 3' untranslated region of flaviviruses: similarities and differences. (1997) (199)
- Distribution of Surface Protein Variants among Hyperinvasive Meningococci: Implications for Vaccine Design (2004) (199)
- Evolutionary history and phylogeography of human viruses. (2008) (198)
- After the pandemic: perspectives on the future trajectory of COVID-19 (2021) (197)
- Dissemination, divergence and establishment of H7N9 influenza viruses in China (2015) (196)
- The Evolution of Endogenous Viral Elements (2011) (196)
- The genesis and spread of reassortment human influenza A/H3N2 viruses conferring adamantane resistance. (2007) (195)
- A likelihood method for the detection of selection and recombination using nucleotide sequences. (1997) (192)
- Long intervals of stasis punctuated by bursts of positive selection in the seasonal evolution of influenza A virus (2006) (189)
- Surveillance of Bat Coronaviruses in Kenya Identifies Relatives of Human Coronaviruses NL63 and 229E and Their Recombination History (2017) (187)
- The phylogeography of human viruses (2004) (187)
- Patterns of Intra- and Interhost Nonsynonymous Variation Reveal Strong Purifying Selection in Dengue Virus (2003) (185)
- Author Correction: A new coronavirus associated with human respiratory disease in China (2020) (185)
- The causes and consequences of genetic variation in dengue virus. (2000) (182)
- Origins, evolution, and vector/host coadaptations within the genus Flavivirus. (2003) (180)
- Genomic Diversity and Evolution of the Lyssaviruses (2008) (176)
- The Evolutionary Genetics of Emerging Viruses (2009) (176)
- Human Adaptation of Ebola Virus during the West African Outbreak (2016) (176)
- Using Metagenomics to Characterize an Expanding Virosphere (2018) (174)
- Dengue viruses cluster antigenically but not as discrete serotypes (2015) (173)
- Genetic constraints and the adaptive evolution of rabies virus in nature. (2002) (172)
- Extinction and rapid emergence of strains of dengue 3 virus during an interepidemic period. (2002) (171)
- The hepatitis C virus epidemic among injecting drug users. (2005) (171)
- Stochastic Processes Are Key Determinants of Short-Term Evolution in Influenza A Virus (2006) (170)
- Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses. (2009) (170)
- Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families (2017) (170)
- Selection for Robustness in Mutagenized RNA Viruses (2007) (168)
- Causes of HIV diversity (1995) (168)
- SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse (2021) (168)
- Human immunodeficiency virus: Phylogeny and the origin of HIV-1 (2001) (167)
- Evolutionary analysis of variants of hepatitis C virus found in South-East Asia: comparison with classifications based upon sequence similarity. (1996) (166)
- Isolation of a new strain of the flavivirus cell fusing agent virus in a natural mosquito population from Puerto Rico. (2006) (164)
- 17th Century Variola Virus Reveals the Recent History of Smallpox (2016) (163)
- Quantifying influenza virus diversity and transmission in humans (2016) (163)
- Viral evolution and the emergence of SARS coronavirus. (2004) (162)
- Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates (2014) (162)
- A multigene analysis of the phylogenetic relationships among the flaviviruses (Family: Flaviviridae) and the evolution of vector transmission (2006) (161)
- Inferring population history from molecular phylogenies. (1995) (161)
- Phylogenetic Analysis Reveals the Global Migration of Seasonal Influenza A Viruses (2007) (160)
- The contrasting phylodynamics of human influenza B viruses (2015) (159)
- The Evolution and Emergence of RNA Viruses (2009) (158)
- Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans (2011) (157)
- Evidence for differing evolutionary dynamics of A/H5N1 viruses among countries applying or not applying avian influenza vaccination in poultry. (2011) (156)
- Global transmission of influenza viruses from humans to swine. (2012) (155)
- Molecular Clocks and the Puzzle of RNA Virus Origins (2003) (155)
- Influenza Virus Reservoirs and Intermediate Hosts: Dogs, Horses, and New Possibilities for Influenza Virus Exposure of Humans (2014) (153)
- Phylogenetic analysis reveals the emergence, evolution and dispersal of carnivore parvoviruses. (2008) (153)
- The evolution of large DNA viruses: combining genomic information of viruses and their hosts. (2004) (151)
- Complete genome characterisation of a novel coronavirus associated with severe human respiratory disease in Wuhan, China (2020) (151)
- Trends in patterns of dengue transmission over 4 years in a pediatric cohort study in Nicaragua. (2010) (150)
- Phylogenetic relationships among rhabdoviruses inferred using the L polymerase gene. (2005) (149)
- Molecular evolution of the insect-specific flaviviruses (2012) (149)
- A Novel Bat Coronavirus Closely Related to SARS-CoV-2 Contains Natural Insertions at the S1/S2 Cleavage Site of the Spike Protein (2020) (149)
- The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data. (2015) (147)
- A reevaluation of the higher taxonomy of viruses based on RNA polymerases (1996) (147)
- The molecular epidemiology of dengue virus serotype 4 in Bangkok, Thailand. (2004) (147)
- The early diversification of influenza A/H1N1pdm (2009) (147)
- The extent of homologous recombination in members of the genus Flavivirus. (2003) (146)
- A tick-borne segmented RNA virus contains genome segments derived from unsegmented viral ancestors (2014) (146)
- Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2. (2021) (145)
- The role of MCM proteins in the cell cycle control of genome duplication (1996) (145)
- Emergence of the Asian 1 Genotype of Dengue Virus Serotype 2 in Viet Nam: In Vivo Fitness Advantage and Lineage Replacement in South-East Asia (2010) (144)
- Invasion and Maintenance of Dengue Virus Type 2 and Type 4 in the Americas (2005) (143)
- Phylogeography and Evolutionary History of Reassortant H9N2 Viruses with Potential Human Health Implications (2011) (142)
- Phylogenetic Evidence for the Rapid Evolution of Human B19 Erythrovirus (2006) (142)
- Molecular epidemiology of an outbreak of infection with hepatitis C virus in recipients of anti-D immunoglobulin (1995) (142)
- Phylodynamics and Human-Mediated Dispersal of a Zoonotic Virus (2010) (141)
- A Revised Evolutionary History of Hepatitis B Virus (HBV) (2002) (140)
- We shouldn’t worry when a virus mutates during disease outbreaks (2020) (139)
- Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution. (2007) (139)
- Sequence Analysis of In Vivo Defective Interfering-Like RNA of Influenza A H1N1 Pandemic Virus (2013) (138)
- Positive Selection Results in Frequent Reversible Amino Acid Replacements in the G Protein Gene of Human Respiratory Syncytial Virus (2009) (138)
- Different Evolutionary Trajectories of European Avian-Like and Classical Swine H1N1 Influenza A Viruses (2009) (138)
- Phylogenetic evidence for adaptive evolution of dengue viruses in nature. (2002) (136)
- Genealogical evidence for positive selection in the nef gene of HIV-1. (1999) (135)
- What Does Virus Evolution Tell Us about Virus Origins? (2011) (134)
- The genomic rate of molecular adaptation of the human influenza A virus. (2011) (134)
- Evolution of Genome Size and Complexity in the Rhabdoviridae (2015) (134)
- Phylogeography, Population Dynamics, and Molecular Evolution of European Bat Lyssaviruses (2005) (133)
- High-Resolution Metatranscriptomics Reveals the Ecological Dynamics of Mosquito-Associated RNA Viruses in Western Australia (2017) (131)
- An emergent clade of SARS-CoV-2 linked to returned travellers from Iran (2020) (131)
- Complete sequence of two tick-borne flaviviruses isolated from Siberia and the UK: analysis and significance of the 5' and 3'-UTRs. (1997) (130)
- Is the Quasispecies Concept Relevant to RNA Viruses? (2002) (129)
- Isolation of a novel species of flavivirus and a new strain of Culex flavivirus (Flaviviridae) from a natural mosquito population in Uganda (2009) (129)
- Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus (2016) (128)
- Spatial Dynamics of Human-Origin H1 Influenza A Virus in North American Swine (2011) (128)
- Molecular epidemiology of dengue type 2 virus in Venezuela: evidence for in situ virus evolution and recombination. (2001) (127)
- Reduced positive selection in vector-borne RNA viruses. (2002) (127)
- Predicting virus emergence amid evolutionary noise (2017) (126)
- Homologous Recombination Is Very Rare or Absent in Human Influenza A Virus (2008) (126)
- Bayesian Estimates of the Evolutionary Rate and Age of Hepatitis B Virus (2007) (125)
- Long-Term Evolution of the Luteoviridae: Time Scale and Mode of Virus Speciation (2010) (124)
- Second-pandemic strain of Vibrio cholerae from the Philadelphia cholera outbreak of 1849. (2014) (124)
- Evolution of Novel Reassortant A/H3N2 Influenza Viruses in North American Swine and Humans, 2009–2011 (2012) (122)
- Discovering the Phylodynamics of RNA Viruses (2009) (122)
- The Role of Selection in Shaping Diversity of Natural M. tuberculosis Populations (2013) (122)
- Selection pressures in the capsid genes of plant RNA viruses reflect mode of transmission. (2004) (122)
- Cross-species transmission of honey bee viruses in associated arthropods. (2013) (121)
- The phylogenomics of evolving virus virulence (2018) (121)
- The Evolutionary and Epidemiological Dynamics of the Paramyxoviridae (2008) (120)
- Frequent Cross-Species Transmission of Parvoviruses among Diverse Carnivore Hosts (2012) (119)
- Epidemiological and evolutionary considerations of SARS-CoV-2 vaccine dosing regimes (2021) (118)
- Deep sequencing reveals mixed infection with 2009 pandemic influenza A (H1N1) virus strains and the emergence of oseltamivir resistance. (2011) (118)
- Transmission of hepatitis B virus infection in Gambian families revealed by phylogenetic analysis. (2001) (115)
- Molecular epidemiology and evolutionary dynamics of betanodavirus in southern Europe. (2012) (115)
- Epidemic dynamics revealed in dengue evolution. (2010) (115)
- A Diverse Range of Novel RNA Viruses in Geographically Distinct Honey Bee Populations (2017) (115)
- Molecular evolution of dengue 2 virus in Puerto Rico: positive selection in the viral envelope accompanies clade reintroduction. (2006) (113)
- Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts (2016) (113)
- Evolution of Base Composition and Codon Usage Bias in the Genus Flavivirus (2001) (112)
- Global migration of influenza A viruses in swine (2015) (111)
- The emergence and evolution of the novel epidemic norovirus GII.4 variant Sydney 2012. (2014) (111)
- Detection of Hepatitis B Virus Infection in Wild-Born Chimpanzees (Pan troglodytes verus): Phylogenetic Relationships with Human and Other Primate Genotypes (2000) (111)
- Discovery, diversity and evolution of novel coronaviruses sampled from rodents in China (2014) (110)
- Gene flow and competitive exclusion of avian influenza A virus in natural reservoir hosts. (2009) (109)
- High rates of molecular evolution in hantaviruses. (2008) (109)
- Pandemics: spend on surveillance, not prediction (2018) (109)
- Emergence of a Highly Pathogenic Avian Influenza Virus from a Low-Pathogenic Progenitor (2014) (108)
- The origin and global emergence of adamantane resistant A/H3N2 influenza viruses (2009) (108)
- Global Distribution of Novel Rhinovirus Genotype (2008) (107)
- Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand (2020) (107)
- Mixed Infection and the Genesis of Influenza Virus Diversity (2009) (107)
- Comparative analysis reveals frequent recombination in the parvoviruses. (2007) (106)
- Molecular Epidemiology of A/H3N2 and A/H1N1 Influenza Virus during a Single Epidemic Season in the United States (2008) (105)
- Intra- and Interhost Evolutionary Dynamics of Equine Influenza Virus (2010) (105)
- Virological factors that increase the transmissibility of emerging human viruses (2016) (104)
- Evolutionary history and dynamics of dog rabies virus in western and central Africa. (2009) (103)
- Evolution of structural proteins of feline immunodeficiency virus: molecular epidemiology and evidence of selection for change. (1993) (103)
- Evolutionary Conservation of the PA-X Open Reading Frame in Segment 3 of Influenza A Virus (2012) (102)
- Host-Specific Parvovirus Evolution in Nature Is Recapitulated by In Vitro Adaptation to Different Carnivore Species (2014) (101)
- Genetic Analysis of Israel Acute Paralysis Virus: Distinct Clusters Are Circulating in the United States (2008) (100)
- Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic (2015) (100)
- Revealing the history of infectious disease epidemics through phylogenetic trees. (1995) (99)
- In vivo distribution and cytopathology of variants of human immunodeficiency virus type 1 showing restricted sequence variability in the V3 loop (1994) (98)
- Genome-Scale Evolution and Phylodynamics of Equine H3N8 Influenza A Virus (2011) (98)
- Networks and groups within the genus Neisseria: analysis of argF, recA, rho, and 16S rRNA sequences from human Neisseria species. (1999) (97)
- Endemic Dengue Associated with the Co-Circulation of Multiple Viral Lineages and Localized Density-Dependent Transmission (2011) (97)
- Evolution, epidemiology, and dispersal of flaviviruses revealed by molecular phylogenies. (2001) (97)
- Molecular epidemiology of dengue virus type 3 in Venezuela. (2003) (97)
- JC Virus Evolution and Its Association with Human Populations (2006) (96)
- Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds. (2012) (96)
- A Bat-Derived Putative Cross-Family Recombinant Coronavirus with a Reovirus Gene (2016) (96)
- Evolutionary dynamics of human and avian metapneumoviruses. (2008) (96)
- The molecular evolution of the alcohol dehydrogenase and alcohol dehydrogenase-related genes in the Drosophila melanogaster species subgroup. (1994) (95)
- Genomic Epidemiology of a Dengue Virus Epidemic in Urban Singapore (2009) (95)
- Positively Charged Amino Acid Substitutions in the E2 Envelope Glycoprotein Are Associated with the Emergence of Venezuelan Equine Encephalitis Virus (2002) (95)
- Emergence and Adaptation of a Novel Highly Pathogenic H7N9 Influenza Virus in Birds and Humans from a 2013 Human-Infecting Low-Pathogenic Ancestor (2017) (94)
- Phylogenetic evidence for frequent positive selection and recombination in the meningococcal surface antigen PorB. (2002) (94)
- Molecular investigation of human immunodeficiency virus (HIV) infection in a patient of an HIV-infected surgeon. (1993) (94)
- Extensive Diversity of RNA Viruses in Australian Ticks (2018) (94)
- Genetic Diversity of Borrelia burgdorferi Sensu Lato in Ticks from Mainland Portugal (2000) (94)
- Evolutionary History and Attenuation of Myxoma Virus on Two Continents (2012) (94)
- Epidemiological and evolutionary considerations of SARS-CoV-2 vaccine dosing regimes (2021) (93)
- Role of Multiple Hosts in the Cross-Species Transmission and Emergence of a Pandemic Parvovirus (2011) (92)
- Introductions and Evolution of Human-Origin Seasonal Influenza A Viruses in Multinational Swine Populations (2014) (92)
- Biological consequences of deletions within the 3'-untranslated region of flaviviruses may be due to rearrangements of RNA secondary structure. (1999) (91)
- Meta-transcriptomics and the evolutionary biology of RNA viruses (2017) (91)
- Recombination between sequences of hepatitis B virus from different genotypes (1996) (91)
- Extensive diversity of coronaviruses in bats from China (2017) (90)
- Family level phylogenies reveal modes of macroevolution in RNA viruses (2010) (90)
- Variation in the number of expressed MHC genes in different cattle class I haplotypes (1999) (89)
- The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic (2022) (89)
- Expanding the RNA Virosphere by Unbiased Metagenomics. (2019) (89)
- Extensive diversity of Rickettsiales bacteria in two species of ticks from China and the evolution of the Rickettsiales (2014) (89)
- High-Resolution Phylogenetic Analysis of Hepatitis C Virus Adaptation and Its Relationship to Disease Progression (2004) (88)
- The early molecular epidemiology of the swine-origin A/H1N1 human influenza pandemic (2009) (88)
- Loss of viral control in early HIV-1 infection is temporally associated with sequential escape from CD8+ T cell responses and decrease in HIV-1-specific CD4+ and CD8+ T cell frequencies. (2004) (88)
- RNA virus genomics: a world of possibilities. (2009) (87)
- The molecular epidemiology of human immunodeficiency virus type 1 in Edinburgh. (1995) (87)
- Origin and Phylodynamics of Rabbit Hemorrhagic Disease Virus (2009) (86)
- New inferences from tree shape: numbers of missing taxa and population growth rates. (2002) (85)
- Blood molecular markers associated with COVID‐19 immunopathology and multi‐organ damage (2020) (85)
- A molecular epidemiological study of Australian bat lyssavirus. (2003) (84)
- Evolution of Termite Symbiosis Informed by Transcriptome-Based Phylogenies (2019) (83)
- Comparative population dynamics of HIV-1 subtypes B and C: subtype-specific differences in patterns of epidemic growth. (2005) (83)
- Assessing the epidemiological effect of wolbachia for dengue control. (2015) (82)
- Tracing the origins of louping ill virus by molecular phylogenetic analysis. (1998) (81)
- Variable Immune-Driven Natural Selection in the Attachment (G) Glycoprotein of Respiratory Syncytial Virus (RSV) (2001) (80)
- Evolutionary Processes among Sylvatic Dengue Type 2 Viruses (2007) (80)
- Secondary structure of the 3'-untranslated region of yellow fever virus: implications for virulence, attenuation and vaccine development. (1997) (80)
- Guidelines for Identifying Homologous Recombination Events in Influenza A Virus (2010) (80)
- The Evolutionary Genetics of Viral Emergence (2007) (80)
- Plasmodium falciparum malaria in 1st–2nd century CE southern Italy (2016) (79)
- Evolution of an Eurasian Avian-like Influenza Virus in Naïve and Vaccinated Pigs (2012) (79)
- Emerging Rabbit Hemorrhagic Disease Virus 2 (RHDVb), Australia (2015) (78)
- Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1 (2006) (78)
- Lineage extinction and replacement in dengue type 1 virus populations are due to stochastic events rather than to natural selection. (2005) (77)
- Dengue Virus Serotype 2 from a Sylvatic Lineage Isolated from a Patient with Dengue Hemorrhagic Fever (2009) (77)
- Full genomic analysis of new variant rabbit hemorrhagic disease virus revealed multiple recombination events. (2015) (76)
- Characterizing the virome of Ixodes ricinus ticks from northern Europe (2017) (76)
- Declining Growth Rate of West Nile Virus in North America (2006) (76)
- Autochthonous Japanese Encephalitis with Yellow Fever Coinfection in Africa. (2017) (76)
- The comparative genomics of viral emergence (2010) (76)
- The evolutionary history and dynamics of bat rabies virus. (2006) (76)
- Recombination Is Associated with an Outbreak of Novel Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Viruses in China (2013) (76)
- The paradox of HBV evolution as revealed from a 16th century mummy (2018) (75)
- On the origin and evolution of the human immunodeficiency virus (HIV) (2001) (75)
- Genomic variation of human immunodeficiency virus type 1 (HIV-1): molecular analyses of HIV-1 in sequential blood samples and various organs obtained at autopsy. (1994) (75)
- Sustained transmission of dengue virus type 1 in the Pacific due to repeated introductions of different Asian strains. (2004) (75)
- CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data (2019) (75)
- Declining transition/transversion ratios through time reveal limitations to the accuracy of nucleotide substitution models (2015) (74)
- Geographic and species association of hepatitis B virus genotypes in non-human primates. (2003) (74)
- Genomics and evolution of Aedes-borne flaviviruses. (2010) (73)
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- Evo-Devo Course 2001 References (2001) (0)
- The evolution of MHC class I genes in cattle (2000) (0)
- Seqotron: a user-friendly sequence editor for Mac OS X (2016) (0)
- Transcriptome Mining Reveals a Spectrum of RNA Viruses in Primitive Plants (2022) (0)
- Characterizing the virome of Ixodes ricinus ticks from northern Europe (2017) (0)
- Avian influenza virus exhibits distinct evolutionary dynamics in wild birds and poultry (2015) (0)
- Viral respiratory infections among Hajj pilgrims in 2013 (2014) (0)
- Faculty Opinions recommendation of Phylogeny and geography predict pathogen community similarity in wild primates and humans. (2008) (0)
- Explorer In vivo distribution and cytopathology of variants of human immunodeficiency virus type 1 showing restricted sequence variability in the V 3 loop (2017) (0)
- Assessment of COVID-19 intervention strategies in the Nordic countries using genomic epidemiology (2021) (0)
- The evolution and origin of European bat lyssaviruses (2006) (0)
- Genome Endogenous Lentiviruses in the Ferret (2012) (0)
- Artificial intelligence redefines RNA virus discovery (2023) (0)
- Evidence for an aquatic origin of influenza virus and the order Articulavirales (2023) (0)
- The effect of intragastric balloon therapy on the intestinal microbiome in obese patients with non-alcoholic fatty liver disease, and correlations with anthropometric indices, nutritional factors, and serum immunological markers (2018) (0)
- White-coat hypertension as a cause of cardiovascular dysfunction (1996) (0)
- 1 Evolution of human respiratory syncytial virus ( RSV ) 2 over multiple seasons in New South Wales , Australia 3 4 (2018) (0)
- 1000 Plagues in the Genomics Era: The Three Pandemic Problem (2020) (0)
- The Biological Object Notation (BON): a structured file format for biological data (2018) (0)
- Inferring Phylogenies.ByJoseph Felsenstein.Sunderland (Massachusetts): Sinauer Associates. $59.95. xx + 664 p; ill.; index. ISBN: 0–87893–177–5. 2004. (2004) (0)
- RNA viromes from terrestrial sites across China expand environmental viral diversity (2022) (0)
- The Phylogenetic Handbook: Foreword (2009) (0)
- Tracking virus outbreaks in the twenty-first century (2018) (0)
- Faculty Opinions recommendation of Synchrony, waves, and spatial hierarchies in the spread of influenza. (2006) (0)
- Genetic Reassortment between Endemic and Introduced Macrobrachium rosenbergii Nodaviruses in the Murray-Darling Basin, Australia (2022) (0)
- Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins (2020) (0)
- P787 The microbiota and it's role in anti-TNF therapy non-response. (2017) (0)
- Prior Evidence of Putative NovelRhinovirusSpecies, Australia (2008) (0)
- Correction for Batovska et al., “Coding-Complete Genome Sequence of Yada Yada Virus, a Novel Alphavirus Detected in Australian Mosquitoes” (2020) (0)
- Molecular evidence for Plasmodium falciparum malaria in 1st-4th c. A.D. southern Italy (2017) (0)
- Bacteria genomic rates data: First release (2016) (0)
- Pandemics: spend on surveillance, not prediction (2018) (0)
- Sudden emergence of human infections with H7N9 avian influenza A virus in Hubei province, central China (2018) (0)
- Understanding the Divergent Evolution and Epidemiology of H3N8 Influenza Viruses in Dogs and Horses (2023) (0)
- Adaptive evolution of bat dipeptidyl peptidase 4 (dpp4): implications for the origin and emergence of Middle East respiratory syndrome coronavirus (2013) (0)
- Pathogens Unifying the Epidemiological and Evolutionary Dynamics of (2011) (0)
- Evolutionary stasis of viruses? (2019) (0)
- Re-emergence and autochthonous dengue virustransmission, Wenzhou and Wuhan, China, 2014. (2015) (0)
- Metagenomic discovery and co-infection of diverse wobbly possum disease viruses and novel hepaciviruses in Australian brushtail possums (2019) (0)
- High resolution metagenomic characterization of complex infectomes in paediatric acute respiratory infection (2020) (0)
- The Evolution of Population Biology: Evolutionary genetics and emergence of RNA virus diseases (2004) (0)
- Comparative analysis reveals adaptive evolution of bat IFITMs and a novel antiviral determinant (2019) (0)
- Hosts Parvoviruses among Diverse Carnivore Frequent Cross-Species Transmission of (0)
- Author response for "Infectious disease phylodynamics with occurrence data" (2021) (0)
- Title Spatial Dynamics of Human-Origin H 1 Influenza A Virus in NorthAmerican Swine (2011) (0)
- Genes, trees and i tions: molecular evidence in (1994) (0)
- Metatranscriptomic Sequencing Reveals Host Species as an Important Factor Shaping the Mosquito Virome (2023) (0)
- Virological sampling of inaccessible wildlife with 2 drones 3 (2018) (0)
- Evolutionary Dynamics of Multiple Sublineages of H5N1 Influenza Viruses in Nigeria from 2006 to 2008 (cid:1) † (2010) (0)
- Faculty Opinions recommendation of High frequency of mutations that expand the host range of an RNA virus. (2007) (0)
- Assessment of COVID-19 intervention strategies in the Nordic countries using genomic 2 (2021) (0)
- Faculty Opinions recommendation of Reconstitution of an infectious human endogenous retrovirus. (2007) (0)
- Extensive diversity of Rickettsiales bacteria in two species of ticks from China and the evolution of the Rickettsiales (2014) (0)
- RESTRICTED SEQUENCE VARIABILITY OF THE HIV-1 V3 LOOP IN-VIVO (1995) (0)
- Publisher Correction: Sudden emergence of human infections with H7N9 avian influenza A virus in Hubei province, central China (2018) (0)
- Frequent in-migration and highly focal transmission of dengue viruses among children in Thailand. (2013) (0)
- Book Review:The Evolutionary Biology of Viruses. Stephen S. Morse (1995) (0)
- Total Infectomes Characterization of Respiratory Infections in pre-COVID-19 Wuhan, China (2021) (0)
- P018 Complete metabonomic and microbiota profiling identifies biomarkers for anti-TNF therapy response. (2017) (0)
- Short Communication Comparative analysis reveals no consistent association between the secondary structure of the 39-untranslated region of dengue viruses and disease syndrome (2006) (0)
- The evolutionary history of vertebrate RNA viruses (2018) (0)
- Emerging Viruses: Past, Present and Future (2010) (0)
- Fundamentals of molecular evolution. By Wen-Hsiung Li and Dan Graur. Sunderland, MA: Sinauer. 1991. + ± 284 pp. $22.95 (paper) (1991) (0)
- Artificially Created Colonies and Abundant Populations of the Brown Dog Tick , Rhipicephalus sanguineus , in and near Human Dwellings (2001) (0)
- Evolution and phylodynamics of enterovirus A71 (2015) (0)
- P314 CHARACTERISATION OF THE PLASMA METABOLIC PHENOTYPE OF ACUTE LIVER FAILURE BY H NMR SPECTROSCOPY (2014) (0)
- Emergence, continuity, and evolution of Yersinia pestis throughout medieval and early modern Denmark (2023) (0)
- Novel viral and microbial species in a translocated Toutouwai (Petroica longipes) population from Aotearoa/New Zealand (2022) (0)
- Discovery of novel highly divergent RNA viruses in European rodents and rabbits (2019) (0)
- Erratum: Coding-complete genome sequence of Yada Yada Virus, a novel alphavirus detected in Australian mosquitoes (American society for microbiology (2020) 9:2 (e01476-19) Doi:10.1128/MRA.01476-19) (2021) (0)
- Rapid epidemic expansion of chikungunya virus-ECSA lineage in Paraguay (2023) (0)
- Zoonotic risk assessment among farmed mammals (2023) (0)
- Faculty Opinions recommendation of Prevalence and genetic diversity of coronaviruses in bats from China. (2006) (0)
- Explorer Acute hepatitis C infection after sexual exposure (2017) (0)
- Author Correction: The evolutionary history of vertebrate RNA viruses (2018) (0)
- Nature Microbiology Review (2018) (0)
- Limited overlap in RNA virome composition among rabbits and their ectoparasites reveals barriers to virus transmission (2019) (0)
- Evolutionary genetics and the emergence of SARS coronavirus. (2005) (0)
- Pandemics–Keep Calm and Carry On (2014) (0)
- Human H1N1 Influenza A Virus in a Single Extensive Geographical Mixing of 2009 (2011) (0)
- Protein Evolution in the Viral Order Mononegavirales (2012) (0)
- Identification of diverse full-length endogenous betaretroviruses in megabats and microbats (2013) (0)
- Meta-transcriptomics reveals a diverse antibiotic resistance gene pool in avian microbiomes (2019) (0)
- Viral Order Mononegavirales Determinant of Protein Evolution in the Level of Gene Expression Is a Major (2012) (0)
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