Edward Marcotte

Q: What Schools Are Affiliated With Edward Marcotte

Edward Marcotte is affiliated with the following schools: University of Texas at Austin, University of California, Los Angeles, University of California, Davis, University of California, San Francisco

Edward Marcotte's AcademicInfluence.com Rankings

Edward Marcotte

Biology

#1869

World Rank

#3028

Historical Rank

Biochemistry

#600

World Rank

#691

Historical Rank

biology Degrees

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Biology

Edward Marcotte's Degrees

PhD Biochemistry University of California, San Francisco
Bachelors Biochemistry University of California, Davis

Why Is Edward Marcotte Influential?

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According to Wikipedia, Edward Marcotte is a professor of biochemistry at The University of Texas at Austin, working in genetics, proteomics, and bioinformatics. Marcotte is an example of a computational biologist who also relies on experiments to validate bioinformatics-based predictions.

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Edward Marcotte's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses (2012) (3190)
Detecting protein function and protein-protein interactions from genome sequences. (1999) (1710)
The genome sequence of the filamentous fungus Neurospora crassa (2003) (1654)
Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. (1999) (1584)
DIP: The Database of Interacting Proteins: 2001 update (2001) (1344)
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation (2007) (1172)
DIP: the Database of Interacting Proteins (2000) (1146)
Global signatures of protein and mRNA expression levels. (2009) (1057)
A combined algorithm for genome-wide prediction of protein function (1999) (965)
A Census of Human Soluble Protein Complexes (2012) (754)
Protein function in the post-genomic era (2000) (743)
Genome evolution in the allotetraploid frog Xenopus laevis (2016) (691)
Prioritizing candidate disease genes by network-based boosting of genome-wide association data. (2011) (666)
Synthetic biology: Engineering Escherichia coli to see light (2005) (596)
Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line (2010) (595)
Characterising and Predicting Haploinsufficiency in the Human Genome (2010) (571)
A Synthetic Genetic Edge Detection Program (2009) (469)
Comparative experiments on learning information extractors for proteins and their interactions (2005) (440)
How complete are current yeast and human protein-interaction networks? (2006) (431)
Panorama of ancient metazoan macromolecular complexes (2015) (400)
A census of protein repeats. (1999) (391)
Protein interaction networks from yeast to human. (2004) (360)
Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana (2010) (349)
A Probabilistic Functional Network of Yeast Genes (2004) (342)
Mining literature for protein-protein interactions (2001) (338)
Widespread reorganization of metabolic enzymes into reversible assemblies upon nutrient starvation (2009) (326)
Long-term neural and physiological phenotyping of a single human (2015) (324)
Systematic humanization of yeast genes reveals conserved functions and genetic modularity (2015) (313)
A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans (2008) (313)
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. (2004) (310)
Systematic discovery of nonobvious human disease models through orthologous phenotypes (2010) (293)
Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome (2005) (269)
Systematic comparison of variant calling pipelines using gold standard personal exome variants (2015) (267)
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence (2008) (261)
A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality (2007) (248)
Molecular-level analysis of the serum antibody repertoire in young adults before and after seasonal influenza vaccination (2016) (236)
LGL: creating a map of protein function with an algorithm for visualizing very large biological networks. (2004) (233)
Localizing proteins in the cell from their phylogenetic profiles. (2000) (231)
Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages (2003) (229)
Exploiting the co-evolution of interacting proteins to discover interaction specificity. (2003) (214)
An Improved, Bias-Reduced Probabilistic Functional Gene Network of Baker's Yeast, Saccharomyces cerevisiae (2007) (209)
Identification and characterization of the constituent human serum antibodies elicited by vaccination (2014) (202)
Chromatographic alignment of ESI-LC-MS proteomics data sets by ordered bijective interpolated warping. (2006) (202)
The planar cell polarity effector Fuz is essential for targeted membrane trafficking, ciliogenesis, and mouse embryonic development (2009) (201)
Defining the pathway of cytoplasmic maturation of the 60S ribosomal subunit. (2010) (180)
The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results (2008) (171)
The need for a public proteomics repository (2004) (170)
Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics (2009) (167)
Chitinases, chitosanases, and lysozymes can be divided into procaryotic and eucaryotic families sharing a conserved core (1996) (160)
Computational genetics: finding protein function by nonhomology methods. (2000) (153)
Genetic dissection of the biotic stress response using a genome-scale gene network for rice (2011) (150)
Expression deconvolution: A reinterpretation of DNA microarray data reveals dynamic changes in cell populations (2003) (149)
Integration of over 9,000 mass spectrometry experiments builds a global map of human protein complexes (2017) (140)
Parallel Evolution in Pseudomonas aeruginosa over 39,000 Generations In Vivo (2010) (134)
Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses (2013) (132)
A probabilistic view of gene function (2004) (131)
Protein abundances are more conserved than mRNA abundances across diverse taxa (2010) (128)
Protein Expression Regulation under Oxidative Stress* (2011) (128)
Dynamic reorganization of metabolic enzymes into intracellular bodies. (2012) (126)
HumanNet v2: human gene networks for disease research (2018) (126)
Coordinated genomic control of ciliogenesis and cell movement by RFX2 (2014) (125)
Diametrical clustering for identifying anti-correlated gene clusters (2003) (124)
Molecular deconvolution of the monoclonal antibodies that comprise the polyclonal serum response (2013) (121)
Highly parallel single-molecule identification of proteins in zeptomole-scale mixtures (2018) (119)
It's the machine that matters: Predicting gene function and phenotype from protein networks. (2010) (119)
X-ray structure of an anti-fungal chitosanase from streptomyces N174 (1996) (119)
A flaw in the typical evaluation scheme for pair-input computational predictions (2012) (114)
Ribosome stalk assembly requires the dual-specificity phosphatase Yvh1 for the exchange of Mrt4 with P0 (2009) (107)
The emerging landscape of single-molecule protein sequencing technologies (2021) (107)
The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery (2016) (107)
The path not taken (2001) (106)
Bud23 Methylates G1575 of 18S rRNA and Is Required for Efficient Nuclear Export of Pre-40S Subunits (2008) (102)
How do shotgun proteomics algorithms identify proteins? (2007) (101)
Sperm is epigenetically programmed to regulate gene transcription in embryos (2016) (101)
Predicting genetic modifier loci using functional gene networks. (2010) (98)
RFX2 is broadly required for ciliogenesis during vertebrate development. (2012) (93)
Role of Pseudomonas aeruginosa Peptidoglycan-Associated Outer Membrane Proteins in Vesicle Formation (2012) (92)
A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies (2019) (88)
Broad network-based predictability of Saccharomyces cerevisiae gene loss-of-function phenotypes (2007) (87)
MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines. (2011) (87)
Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence (2008) (87)
Metabolic crosstalk regulates Porphyromonas gingivalis colonization and virulence during oral polymicrobial Infection (2017) (85)
Calculating absolute and relative protein abundance from mass spectrometry-based protein expression data (2008) (85)
A map of human protein interactions derived from co-expression of human mRNAs and their orthologs (2008) (83)
Integrating shotgun proteomics and mRNA expression data to improve protein identification (2009) (82)
Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy (2008) (82)
Mechanisms of Cell Cycle Control Revealed by a Systematic and Quantitative Overexpression Screen in S. cerevisiae (2008) (80)
Mass spectrometry of the M. smegmatis proteome: protein expression levels correlate with function, operons, and codon bias. (2005) (78)
Intrinsic Antimicrobial Resistance Determinants in the Superbug Pseudomonas aeruginosa (2015) (77)
A fast algorithm for genome‐wide analysis of proteins with repeated sequences (1999) (76)
Predicting functional linkages from gene fusions with confidence. (2002) (71)
Revisiting the negative example sampling problem for predicting protein-protein interactions (2011) (68)
Kinetic analysis of barley chitinase. (1997) (68)
Efforts to make and apply humanized yeast (2015) (67)
Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity (2019) (66)
The DEAH-box Helicase Dhr1 Dissociates U3 from the Pre-rRNA to Promote Formation of the Central Pseudoknot (2015) (62)
Characterization of a Thermostable DNA Glycosylase Specific for U/G and T/G Mismatches from the Hyperthermophilic ArchaeonPyrobaculum aerophilum (2000) (60)
Two-tiered Approach Identifies a Network of Cancer and Liver Disease-related Genes Regulated by miR-122* (2011) (60)
Towards Consensus Gene Ages (2016) (58)
A Bacteriophage Tailspike Domain Promotes Self-Cleavage of a Human Membrane-Bound Transcription Factor, the Myelin Regulatory Factor MYRF (2013) (57)
Integrating Co-occurrence Statistics with Information Extraction for Robust Retrieval of Protein Interactions from Medline (2006) (57)
Proteomic Identification of Monoclonal Antibodies from Serum (2014) (55)
A proteomic survey of widespread protein aggregation in yeast. (2014) (54)
Systematic profiling of cellular phenotypes with spotted cell microarrays reveals mating-pheromone response genes (2006) (53)
Mining gene functional networks to improve mass-spectrometry-based protein identification (2009) (52)
Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus (2017) (51)
A Theoretical Justification for Single Molecule Peptide Sequencing (2014) (51)
Systematic prediction of gene function in Arabidopsis thaliana using a probabilistic functional gene network (2011) (49)
Prediction of gene–phenotype associations in humans, mice, and plants using phenologs (2013) (48)
hu.MAP 2.0: integration of over 15,000 proteomic experiments builds a global compendium of human multiprotein assemblies (2020) (46)
A fast coarse filtering method for peptide identification by mass spectrometry (2006) (44)
Bacteriophages use an expanded genetic code on evolutionary paths to higher fitness (2014) (44)
Evolutionarily Repurposed Networks Reveal the Well-Known Antifungal Drug Thiabendazole to Be a Novel Vascular Disrupting Agent (2012) (44)
Protein function prediction using the Protein Link EXplorer (PLEX) (2005) (43)
Chicken prion tandem repeats form a stable, protease-resistant domain. (1999) (43)
The proteomic response of Mycobacterium smegmatis to anti-tuberculosis drugs suggests targeted pathways. (2008) (43)
Reducing MCM levels in human primary T cells during the G0→G1 transition causes genomic instability during the first cell cycle (2010) (42)
Exploiting Big Biology: Integrating Large-scale Biological Data for Function Inference (2001) (42)
A role for central spindle proteins in cilia structure and function (2011) (40)
Pseudomonas aeruginosa Enhances Production of a Non-Alginate Exopolysaccharide during Long-Term Colonization of the Cystic Fibrosis Lung (2013) (39)
Understudied proteins: opportunities and challenges for functional proteomics (2022) (38)
The E. coli molecular phenotype under different growth conditions (2016) (37)
A liquid-like organelle at the root of motile ciliopathy (2018) (37)
Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions (2016) (36)
Quantitative gene expression assessment identifies appropriate cell line models for individual cervical cancer pathways (2007) (36)
Systematic Discovery of Endogenous Human Ribonucleoprotein Complexes (2018) (35)
Learning to Extract Proteins and their Interactions from Medline Abstracts (2003) (34)
Protein localization screening in vivo reveals novel regulators of multiciliated cell development and function (2018) (32)
MouseNet v2: a database of gene networks for studying the laboratory mouse and eight other model vertebrates (2015) (32)
Systematic Definition of Protein Constituents along the Major Polarization Axis Reveals an Adaptive Reuse of the Polarization Machinery in Pheromone-Treated Budding Yeast (2008) (31)
Label-Free Protein Quantitation Using Weighted Spectral Counting (2012) (30)
Systems-wide Studies Uncover Commander, a Multiprotein Complex Essential to Human Development. (2017) (30)
Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation (2015) (30)
Single-step Precision Genome Editing in Yeast Using CRISPR-Cas9 (2018) (29)
mspire: mass spectrometry proteomics in Ruby (2008) (29)
Statistical Approach to Protein Quantification* (2013) (28)
Disorder, Promiscuity, and Toxic Partnerships (2009) (27)
GWAB: a web server for the network-based boosting of human genome-wide association data (2017) (27)
Classification of Single Particles from Human Cell Extract Reveals Distinct Structures (2018) (26)
Human Cell Chips: Adapting DNA Microarray Spotting Technology to Cell-Based Imaging Assays (2009) (26)
Humanization of yeast genes with multiple human orthologs reveals functional divergence between paralogs (2020) (25)
Group II Intron Protein Localization and Insertion Sites Are Affected by Polyphosphate (2008) (24)
Structural analysis shows five glycohydrolase families diverged from a common ancestor. (1998) (24)
Systematic bacterialization of yeast genes identifies a near-universally swappable pathway (2017) (24)
Proteomic and protein interaction network analysis of human T lymphocytes during cell-cycle entry (2012) (24)
Photography Coupled with Self-Propagating Chemical Cascades: Differentiation and Quantitation of G- and V-Nerve Agent Mimics via Chromaticity (2018) (23)
Buffering by gene duplicates: an analysis of molecular correlates and evolutionary conservation (2008) (23)
UVnovo: A de Novo Sequencing Algorithm Using Single Series of Fragment Ions via Chromophore Tagging and 351 nm Ultraviolet Photodissociation Mass Spectrometry. (2016) (22)
Id2a functions to limit Notch pathway activity and thereby influence the transition from proliferation to differentiation of retinoblasts during zebrafish retinogenesis. (2012) (22)
Global metabolic changes following loss of a feedback loop reveal dynamic steady states of the yeast metabolome. (2007) (21)
HumanNet v3: an improved database of human gene networks for disease research (2021) (21)
Protein-to-mRNA Ratios Are Conserved between Pseudomonas aeruginosa Strains (2014) (21)
The many nuanced evolutionary consequences of duplicated genes (2018) (20)
RIDDLE: reflective diffusion and local extension reveal functional associations for unannotated gene sets via proximity in a gene network (2012) (19)
Identifying direct contacts between protein complex subunits from their conditional dependence in proteomics datasets (2017) (19)
Revisiting and revising the purinosome. (2014) (19)
Abundances of transcripts, proteins, and metabolites in the cell cycle of budding yeast reveal coordinate control of lipid metabolism (2020) (18)
ComplexQuant: high-throughput computational pipeline for the global quantitative analysis of endogenous soluble protein complexes using high resolution protein HPLC and precision label-free LC/MS/MS. (2013) (18)
Extracting gene and protein names from biomedical abstracts (2002) (17)
Identifying direct targets of transcription factor Rfx2 that coordinate ciliogenesis and cell movement (2014) (17)
Linking Biological Literature , Ontologies and Databases : Mining Biological Semantics (2005) (17)
MORPHIN: a web tool for human disease research by projecting model organism biology onto a human integrated gene network (2014) (17)
WheatNet: a Genome-Scale Functional Network for Hexaploid Bread Wheat, Triticum aestivum. (2017) (17)
Functional partitioning of a liquid-like organelle during assembly of axonemal dyneins (2020) (17)
Measuring the dynamics of the proteome. (2001) (16)
Yeast Cells Expressing the Human Mitochondrial DNA Polymerase Reveal Correlations between Polymerase Fidelity and Human Disease Progression* (2014) (15)
Development through the eyes of functional genomics. (2004) (15)
An open invitation to the Understudied Proteins Initiative (2022) (15)
Effects of functional bias on supervised learning of a gene network model. (2009) (15)
Transiently Transfected Purine Biosynthetic Enzymes Form Stress Bodies (2013) (15)
Crystallization of a chitosanase from Streptomyces N174. (1993) (14)
Correction: Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses (2013) (14)
Separating distinct structures of multiple macromolecular assemblies from cryo-EM projections (2019) (13)
Systematic Humanization of the Yeast Cytoskeleton Discerns Functionally Replaceable from Divergent Human Genes (2019) (13)
The proteomic response to mutants of the Escherichia coli RNA degradosome. (2013) (13)
Murine Cytomegalovirus Deubiquitinase Regulates Viral Chemokine Levels To Control Inflammation and Pathogenesis (2017) (13)
A systematic, label-free method for identifying RNA-associated proteins in vivo provides insights into vertebrate ciliary beating machinery. (2020) (12)
Structural Biology in the Multi-Omics Era (2020) (12)
Absolute abundance for the masses (2009) (12)
Bioinformatic Prediction of Yeast Gene Function (2006) (12)
Using Biomedical Literature Mining to Consolidate the Set of Known Human Protein-Protein Interactions (2005) (11)
Systematic Identification of Protein Phosphorylation-Mediated Interactions (2020) (11)
A highly parallel strategy for storage of digital information in living cells (2016) (11)
Integrative modeling reveals the molecular architecture of the intraflagellar transport A (IFT-A) complex (2022) (11)
Solution-phase and solid-phase sequential, selective modification of side chains in KDYWEC and KDYWE as models for usage in single-molecule protein sequencing. (2017) (11)
Ancestral reconstruction of protein interaction networks (2018) (11)
Temporal stability and molecular persistence of the bone marrow plasma cell antibody repertoire (2016) (10)
Predictability of Genetic Interactions from Functional Gene Modules (2016) (10)
24 Bioinformatic Prediction of Yeast Gene Function (2007) (10)
Computational discovery of pathway-level genetic vulnerabilities in non-small-cell lung cancer (2016) (10)
Comprehensive de Novo Peptide Sequencing from MS/MS Pairs Generated through Complementary Collision Induced Dissociation and 351 nm Ultraviolet Photodissociation. (2017) (10)
Bioinformatic challenges for the next decade(s) (2006) (9)
Functional expression of opioid receptors and other human GPCRs in yeast engineered to produce human sterols (2021) (9)
Solid-Phase Peptide Capture and Release for Bulk and Single-Molecule Proteomics (2020) (8)
From Space to Sequence and Back Again: Iterative DNA Proximity Ligation and its Applications to DNA-Based Imaging (2018) (8)
Co-fractionation/mass spectrometry to identify protein complexes (2021) (8)
Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes (2015) (8)
Humanization of yeast genes with multiple human orthologs reveals principles of functional divergence between paralogs (2019) (8)
Protein Sequencing, One Molecule at a Time. (2022) (7)
High-throughput immunofluorescence microscopy using yeast spheroplast cell-based microarrays. (2011) (7)
Applications of comparative evolution to human disease genetics. (2015) (7)
A single network comprising the majority of genes accurately predicts the phenotypic effects of gene perturbation in C . elegans (2007) (6)
ARVCF catenin controls force production during vertebrate convergent extension. (2022) (6)
Statistical Approach to Protein Quantification. (2014) (6)
Synthetic repertoires derived from convalescent COVID-19 patients enable discovery of SARS-CoV-2 neutralizing antibodies and a novel quaternary binding modality (2021) (6)
A self-assembling lanthanide molecular nanoparticle for optical imaging. (2015) (6)
The protein organization of a red blood cell (2021) (6)
Next-Generation TLC: A Quantitative Platform for Parallel Spotting and Imaging. (2020) (6)
Modes of Interaction between Individuals Dominate the Topologies of Real World Networks (2014) (5)
Super.Complex: A supervised machine learning pipeline for molecular complex detection in protein-interaction networks (2021) (5)
Bringing Microscopy-By-Sequencing into View. (2020) (4)
Correction: Corrigendum: The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery (2016) (4)
Erratum: Genome sequence of Haloarcula marismortui: A halophilic archaeon from the dead sea (Genome Research (2004) vol. 14 (2221-2234)) (2004) (4)
Predicting Gene-Disease Associations Using Multiple Species Data (2011) (4)
Spatiotemporal transcriptional dynamics of the cycling mouse oviduct (2021) (4)
Simplified geometric representations of protein structures identify complementary interaction interfaces (2019) (4)
Lanthanide nano-drums: a new class of molecular nanoparticles for potential biomedical applications. (2014) (4)
Assembling a jigsaw puzzle with 20,000 parts (2003) (3)
Photoredox-catalyzed decarboxylative C-terminal differentiation for bulk and single molecule proteomics (2021) (3)
A fast coarse filtering method for protein identification by mass spectrometry (3)
High-content protein localization screening in vivo reveals novel regulators of multiciliated cell development and function (2017) (3)
Integrating functional genomics data. (2008) (3)
A systematic, label-free method for identifying RNA-associated proteins in vivo provides insights into vertebrate ciliary beating (2020) (3)
Mapping Functional Protein Neighborhoods in the Mouse Brain (2020) (3)
WheatNet: A genome-scale functional network for hexaploid bread wheat, Triticum aestivum (2017) (3)
Predicting Protein Function and Nworks on a Genomewide Scale (2002) (3)
Does AlphaFold2 model proteins’ intracellular conformations? An experimental test using cross-linking mass spectrometry of endogenous ciliary proteins (2022) (3)
Discovery of new vascular disrupting agents based on evolutionarily conserved drug action, pesticide resistance mutations, and humanized yeast. (2021) (3)
A synthesis of over 9,000 mass spectrometry experiments reveals the core set of human protein complexes (2016) (3)
Synthesis of Carboxy ATTO 647N Using Redox Cycling for Xanthone Access. (2019) (3)
Abundances of transcripts, proteins, and metabolites in the cell cycle of budding yeast reveals coordinate control of lipid metabolism (2019) (2)
Faculty Opinions recommendation of Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans. (2009) (2)
Supervised Community Detection in Protein-interaction Networks (2019) (2)
Twinfilin1 controls lamellipodial protrusive activity and actin turnover during vertebrate gastrulation. (2021) (2)
Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions (2017) (1)
Cell adhesions link subcellular actomyosin dynamics to tissue scale force production during vertebrate convergent extension (2021) (1)
Practical computational approaches to inferring protein function (2004) (1)
Studies of Surface Preparation for the Fluorosequencing of Peptides. (2021) (1)
Evaluating the Effect of Dye-Dye Interactions of Xanthene-Based Fluorophores in the Fluorosequencing of Peptides. (2022) (1)
Special Issue in the Journal Artificial Intelligence in Medicine on Summarization and Information Extraction from Medical Documents, Comparative Experiments on Learning Information Extractors for Proteins and their Interactions (2004) (1)
Protein Expression Regulation under Oxidative (2011) (1)
Alternative proteoforms and proteoform-dependent assemblies in humans and plants (2022) (1)
Twinfilin1 controls lamellipodial protrusive activity and actin turnover during vertebrate gastrulation (2020) (1)
Response to McDermott and Samudrala: Enhanced functional information from predicted protein networks (2004) (1)
Author response: Systematic bacterialization of yeast genes identifies a near-universally swappable pathway (2017) (1)
Learning Information Extractors for Proteins and their Interactions (1)
The planar cell polarity effector Fuzzy is essential for targeted membrane trafficking, ciliogenesis, and mouse embryonic development (2009) (1)
An estimate of relative contributions of transcriptional and translational regulation by absolute protein expression profiling (2006) (1)
Antifungal benzimidazoles disrupt vasculature by targeting one of nine β-tubulins (2020) (1)
Calculating absolute and relative protein abundance from mass spectrometry-based protein expression data. (2008) (1)
Super.Complex: A supervised machine learning pipeline for molecular complex detection in protein-interaction networks (2021) (1)
Network Biology editorial 2013. (2013) (1)
Withdrawn as Duplicate: The many nuanced evolutionary consequences of duplicated genes. (2018) (1)
Kinetic Analysis of Barley Chitinase 1 (1997) (1)
Shotgun proteomic analysis of drug treated mycobacteria (2006) (1)
A phase separated organelle at the root of motile ciliopathy (2017) (1)
Protein nonadditive expression and solubility in Arabidopsis hybrids and allotetraploids (2023) (0)
IDENTIFICATION OF CANDDATE GENES (2017) (0)
Integration and validation of mass spectrometry proteomics data sets (2008) (0)
Integrative Data Analysis to Improve Protein Identification in Shotgun Proteomics Experiments Supplementary Notes (2009) (0)
Supplement (1946) (0)
A LOOK AT THE FUTURE OF MACROMOLECULAR STRUCTURE DETERMINATION (1998) (0)
Improving the Accuracy of Functional Inferences from Links between Proteins Detected by Computational or Experimental Methods (2000) (0)
S03-01. Planar cell polarity: Linking developmental regulatory mechanisms to basic cellular machinery during morphogenesis (2009) (0)
Systematic profiling of cellular phenotypes and gene function using spotted cellular microarrays (2006) (0)
Data and text mining mspire : mass spectrometry proteomics in Ruby (2008) (0)
Metabolic crosstalk regulates Porphyromonas gingivalis colonization and virulence during oral polymicrobial infection (2017) (0)
STREPTOMYCES N174 CHITOSANASE PH5.5 298K (1996) (0)
Amino acid sequence assignment from single molecule peptide sequencing data using a two-stage classifier (2023) (0)
Faculty Opinions recommendation of Protein stability and resistance to oxidative stress are determinants of longevity in the longest-living rodent, the naked mole-rat. (2010) (0)
Comparing Protein and mRNA Abundances to Protein Expression Regulation (2011) (0)
Isolement rapide d'anticorps monoclonaux à partir d'animaux (2011) (0)
Predicting Drug Synergy and Antagonism from Genetic Interaction Neighborhoods (2016) (0)
Faculty Opinions recommendation of Mutational inactivation of STAG2 causes aneuploidy in human cancer. (2011) (0)
1 PROTEIN EXPRESSION REGULATION UNDER OXIDATIVE STRESS (2011) (0)
Improving integrative 3D modeling into low‐ to medium‐resolution electron microscopy structures with evolutionary couplings (2021) (0)
Bringing Microscopy-By-Sequencing into View: (Trends in Biotechnology 38, 154-162, 2020). (2020) (0)
Faculty Opinions recommendation of Differential arginylation of actin isoforms is regulated by coding sequence-dependent degradation. (2010) (0)
TABLE S5 Differentially expressed genes in ancestors and strain PA14. (2010) (0)
Construction of Networks from Diverse Data Sources (2006) (0)
Label-free proteomic comparison reveals ciliary and non-ciliary phenotypes of IFT-A mutants (2023) (0)
Quantitative, molecular-level analysis of the serum antibody repertoire reveals unanticipated features of the response to seasonal influenza vaccination (2016) (0)
TABLE S1 P. aeruginosa strains used in this study. (2010) (0)
Steps Towards a Modular Theory of Disease (2012) (0)
Disease Modeling via Large-Scale Network Analysis Report Title (2015) (0)
Practical computational 1 approaches to inferring protein 2 function 3 (2003) (0)
Systems Biology Analysis of Human Primary T Cells Identifies SAP145 as Rate Limiting for the G 1 →S Phase Transition. (2007) (0)
Humanized CB1R and CB2R yeast biosensors enable facile screening of cannabinoid compounds (2022) (0)
The Thesis Committee for Antony Martin Harvey Certifies that this is the approved version of the following thesis: Evaluation of MRN Complex and ATM Protein-Protein Interactions using Cleavable DSSO Crosslinking and Mass Spectrometry APPROVED BY SUPERVISING COMMITTEE: (2017) (0)
TABLE S2 Orthologous genes from P. aeruginosa strains PAO1, PA14, PA7, and LESB58. (2010) (0)
Network-guided Genetics for Microorganisms (2008) (0)
Microsoft Word-010514 manuscript text.docx (2014) (0)
Abstract IA21: Developing a new functional classification of lung cancer based on tumor acquired vulnerabilities. (2014) (0)
Longitudinal landscapes of serum antibody repertoires after influenza infection and vaccination (2016) (0)
Author response: A liquid-like organelle at the root of motile ciliopathy (2018) (0)
Rapid, Scalable, and Combinatorial Genome Engineering by Markerless Enrichment and Recombination of Genetically Engineered Loci (MERGE) in Yeast (2022) (0)
Reducing MCM loading causes chromosomal aneuploidy (2007) (0)
Molecular complex detection in protein interaction networks through reinforcement learning (2022) (0)
Correction: Single-step Precision Genome Editing in Yeast Using CRISPR-Cas9 (2020) (0)
Rapid, scalable, combinatorial genome engineering by Marker-less Enrichment and Recombination of Genetically Engineered loci (MERGE) (2022) (0)
Prediction of gene-phenotype associations in humans, mice, and plants using phenologs (2013) (0)
Functional redundancy and complementarity of Hoxa5 and Hoxb5 paralogous genes during mouse lung development (2009) (0)
Gene expression profiling of cervical cancer and cell line models (2006) (0)
Author response: Coordinated genomic control of ciliogenesis and cell movement by RFX2 (2013) (0)
BIOINFORMATICS ORIGINAL PAPER Revisiting the negative example sampling problem for predicting protein–protein interactions (2011) (0)
Systems biology analysis of the G(0)-> G(1) commitment point of human primary T cells (2009) (0)
Faculty Opinions recommendation of Controlled enzymatic production of astrocytic hydrogen peroxide protects neurons from oxidative stress via an Nrf2-independent pathway. (2010) (0)
Issue information (2021) (0)
Advisory Board and Contents (2020) (0)
Gene Finding (2001) (0)
Disease Modeling via Large-Scale Network Analysis (2015) (0)
Improving integrative 3D modeling into low- to medium- resolution EM structures with evolutionary couplings (2021) (0)
Reconstructing the functional coupling between yeast proteins (2006) (0)
Application of a new strategy to identify regulators of a signalling pathway in human immune cells (2011) (0)
Interrogating conserved elements of diseases using Boolean combinations of orthologous phenotypes (2015) (0)
The path not taken If known pathways represent preferred paths through global protein networks , large-scale experiments should focus on how to recognize these paths among all of the alternatives (0)
Formation of intracellular glutamine synthetase bodies depends strongly upon cellular age and glucose availability (2014) (0)
RIDDLE: reflective diffusion and local extension reveal functional associations for unannotated gene sets via proximity in a gene network (2012) (0)
'Excess' MCM proteins maintain genomic stability in human cells (2007) (0)

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