Edward Trifonov | Academic Influence

Edward Trifonov's AcademicInfluence.com Rankings

Edward Trifonov

Physics

#1681

World Rank

#2566

Historical Rank

Biophysics

#202

World Rank

#212

Historical Rank

physics Degrees

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Physics

Edward Trifonov's Degrees

Bachelors Biophysics University of California, Berkeley
PhD Biophysics Stanford University

Why Is Edward Trifonov Influential?

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According to Wikipedia, Edward Nikolayevich Trifonov is a Russian-born Israeli molecular biophysicist and a founder of Israeli bioinformatics. In his research, he specializes in the recognition of weak signal patterns in biological sequences and is known for his unorthodox scientific methods.

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Edward Trifonov's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

The pitch of chromatin DNA is reflected in its nucleotide sequence. (1980) (487)
Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles. (1991) (438)
A computer algorithm for testing potential prokaryotic terminators. (1984) (304)
Compilation and analysis of eukaryotic POL II promoter sequences. (1986) (293)
Consensus temporal order of amino acids and evolution of the triplet code. (2000) (259)
Curved DNA: design, synthesis, and circularization. (1986) (237)
The Triplet Code From First Principles (2004) (231)
Estimation of wedge components in curved DNA (1987) (213)
Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences. (1996) (211)
Translation framing code and frame-monitoring mechanism as suggested by the analysis of mRNA and 16 S rRNA nucleotide sequences. (1987) (210)
10-11 bp periodicities in complete genomes reflect protein structure and DNA folding (1999) (166)
Linguistics of nucleotide sequences: morphology and comparison of vocabularies. (1986) (166)
The multiple codes of nucleotide sequences. (1989) (165)
Vocabulary of Definitions of Life Suggests a Definition (2011) (147)
Closed loops of nearly standard size: common basic element of protein structure (2000) (145)
CURVATURE: software for the analysis of curved DNA (1993) (144)
Terminators of transcription with RNA polymerase from Escherichia coli: what they look like and how to find them. (1986) (110)
3-, 10.5-, 200- and 400-base periodicities in genome sequences (1998) (107)
Interpreting correlations in biosequences (1998) (98)
What positions nucleosomes? – A model (2002) (91)
Elucidating Sequence Codes: Three Codes for Evolution (1999) (85)
Van der Waals locks: loop-n-lock structure of globular proteins. (2001) (81)
Distinct Stages of Protein Evolution as Suggested by Protein Sequence Analysis (2001) (76)
Sequence-dependent kinks induced in curved DNA. (1990) (75)
Tuning Function of Tandemly Repeating Sequences: A Molecular Device for Fast Adaptation (2004) (72)
Distribution of Rare Triplets Along mRNA and Their Relation to Protein Folding (2002) (72)
[Evolutionary aspects of protein structure and folding]. (2001) (70)
Possibility of nonkinked packing of DNA in chromatin. (1978) (67)
Linguistic complexity of protein sequences as compared to texts of human languages. (1996) (64)
Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure. (1999) (63)
Sequence fossils, triplet expansion, and reconstruction of earliest codons. (1997) (61)
The features of Drosophila core promoters revealed by statistical analysis (2006) (59)
Cracking the chromatin code: precise rule of nucleosome positioning. (2011) (59)
DNA in profile. (1991) (58)
Underlying order in protein sequence organization. (1994) (53)
Gene splice sites correlate with nucleosome positions. (2004) (52)
Linguistic measure of taxonomic and functional relatedness of nucleotide sequences. (1990) (52)
Clustering of thymine dimers in ultraviolet irradiated DNA and the long-range transfer of electronic excitation along the molecule. (1973) (52)
Curved DNA. (1985) (52)
Preferred positions of AA and TT dinucleotides in aligned nucleosomal DNA sequences. (1992) (51)
Interfering contexts of regulatory sequence elements (1996) (50)
Loop Fold Structure of Proteins: Resolution of Levinthal's Paradox (2002) (50)
Protein folding: Looping from hydrophobic nuclei (2001) (49)
Evolution of protein modularity. (2009) (49)
Sequence Structure of Hidden 10.4-base Repeat in the Nucleosomes of C. elegans (2008) (48)
The origin of the genetic code and of the earliest oligopeptides. (2009) (46)
Splice junctions follow a 205-base ladder. (1991) (45)
Sequence Structure of Human Nucleosome DNA (2006) (45)
Gnomic : a dictionary of genetic codes (1986) (42)
Sequence periodicity in complete genomes of archaea suggests positive supercoiling. (1998) (41)
mRNA periodical infrastructure complementary to the proof-reading site in the ribosome. (1992) (41)
The multiple codes of nucleotide sequences (1989) (40)
Yeast Nucleosome DNA Pattern: Deconvolution from Genome Sequences of S. cerevisiae (2005) (39)
Definition of Life: Navigation through Uncertainties (2012) (38)
Repertoires of the Nucleosome-Positioning Dinucleotides (2009) (37)
Visible periodicity of strong nucleosome DNA sequences (2015) (37)
Mammalian retroposons integrate at kinkable DNA sites. (1998) (37)
Dinucleosome DNA of human K562 cells: experimental and computational characterizations. (2003) (36)
Three Sequence Rules for Chromatin (2006) (36)
Sequence-dependent variations of B-DNA structure and protein-DNA recognition. (1983) (36)
Conserved Sequences of Prokaryotic Proteomes and Their Compositional Age (2005) (36)
Open and closed 5 S ribosomal RNA, the only two universal structures encoded in the nucleotide sequences. (1983) (34)
Loop fold nature of globular proteins. (2001) (34)
Nucleosomal DNA sequence database. (1993) (34)
Nucleosome Positioning by Sequence, State of the Art and Apparent Finale (2010) (33)
FineStr: a web server for single-base-resolution nucleosome positioning (2010) (33)
Protein Sequences Yield a Proteomic Code (2003) (33)
Intervening sequences exhibit distinct vocabulary. (1986) (32)
DNA bendability--a novel feature in E. coli promoter recognition. (1999) (32)
Early Detection of G + C Differences in Bacterial Species Inferred from the Comparative Analysis of the Two Completely Sequenced Helicobacter pylori Strains (2001) (31)
CCAAT box revisited: bidirectionality, location and context. (1988) (30)
Compensatory nature of Chargaff’s second parity rule (2013) (29)
Enhancement of the nucleosomal pattern in sequences of lower complexity. (1997) (29)
Primordia Vita. Deconvolution from Modern Sequences. (2007) (28)
Protein Modules Conserved Since LUCA (2006) (28)
Overlapping Messages and Survivability (2004) (28)
Human nucleosomes: special role of CG dinucleotides and Alu-nucleosomes (2011) (27)
Nucleosome DNA sequence structure of isochores (2011) (25)
Inherently curved DNA and its structural elements (1988) (25)
Base pair stacking in nucleosome DNA and bendability sequence pattern. (2010) (24)
Localization of curved DNA and its association with nucleosome phasing in the promoter region of the human estrogen receptor α gene (1999) (24)
Earliest pages of bioinformatics (2000) (24)
Origin and evolution of genes and genomes. Crucial role of triplet expansions (2012) (23)
Flowering Buds of Globular Proteins: Transpiring Simplicity of Protein Organization (2002) (23)
Spelling Protein Structure (2003) (23)
[Genetic level of DNA sequences is determined by superposition of many codes]. (1997) (22)
Thirty Years of Multiple Sequence Codes (2011) (21)
Noninteger pitch and nuclease sensitivity of chromatin DNA. (1979) (20)
Unusual frequencies of certain alternating purine‐pyrimidine runs in natural DNA sequences: relation to Z‐DNA (1985) (20)
Periodic recurrence of methionines: fossil of gene fusion? (1995) (20)
Protein Structure and Folding: A New Start (2001) (20)
Sequence periodicity of Escherichia coli is concentrated in intergenic regions (2004) (18)
Protein Sequence Modules (2005) (18)
Combinations of Ancestral Modules in Proteins (2007) (18)
RNA secondary structure and squence conservation in C1 region of human immunodeficiency virus type 1 env gene. (2002) (17)
Review fifteen years of search for strong nucleosomes (2015) (17)
Imported sequences in the mitochondrial yeast genome identified by nucleotide linguistics. (1992) (16)
Segmented structure of protein sequences and early evolution of genome by combinatorial fusion of DNA elements (1995) (16)
Towards functional repertoire of the earliest proteins (2013) (16)
Multiple levels of meaning in DNA sequences, and one more (2012) (16)
Molecular evolution from abiotic scratch (2002) (15)
Theory of Early Molecular Evolution: Predictions and Confirmations (2006) (15)
Walking through protein sequence space. (2007) (15)
Closed loops: persistence of the protein chain returns. (2002) (15)
Strong nucleosomes reside in meiotic centromeres of C. elegans (2015) (14)
Sequence-directed Mapping of Nucleosome Positions (2007) (14)
Strong nucleosomes of A. thaliana concentrate in centromere regions (2015) (14)
Role of Everlasting Triplet Expansions in Protein Evolution (2011) (14)
Tracing Life back to elements (2008) (14)
Codes of nucleotide sequences (1988) (13)
Closed Loops of TIM Barrel Protein Fold (2005) (13)
The path to life’s origins. Remaining hurdles (2014) (12)
Walking through the protein sequence space: Towards new generation of the homology modeling (2007) (12)
From protein sequence space to elementary protein modules. (2008) (12)
Spectral analysis of distributions: finding periodic components in eukaryotic enzyme length data. (2002) (12)
Applicability of the multiple alignment algorithm for detection of weak patterns: periodically distributed DNA pattern as a study case (1996) (12)
Gene Splicing: Spatial Separation of Overlapping Messages (1993) (12)
On the Observable Transition to Living Matter (2011) (12)
Nucleosomal TATA-switch: competing orientations of TATA on the nucleosome. (2013) (11)
Hidden messages in the nef gene of human immunodeficiency virus type 1 suggest a novel RNA secondary structure. (2003) (11)
"Anticipated" nucleosome positioning pattern in prokaryotes. (2011) (10)
Back to Units of Protein Folding (2002) (10)
Early Molecular Evolution (2006) (10)
Evolutionary Networks in the Formatted Protein Sequence Space (2007) (9)
Segmented structure of separate and transposable DNA and RNA elements as suggested by their size distributions. (1997) (9)
Superhelicity of nucleosomal DNA changes its double-helical repeat (1983) (9)
Structure of DNA in Chromatin (1981) (9)
Computer-aided mapping of DNA-protein interaction sites (1984) (9)
Specific Selection Pressure at the Third Codon Positions: Contribution to 10- to 11-Base Periodicity in Prokaryotic Genomes (2006) (8)
Codes of Biosequences (2008) (8)
Reading sequence-directed computational nucleosome maps (2015) (8)
Universal full-length nucleosome mapping sequence probe (2015) (8)
Disorder to Order, Nonlife to Life: In the Beginning There Was a Mistake (2012) (8)
High resolution positioning of intron ends on the nucleosomes. (2011) (7)
Nucleosome Positioning Patterns Derived from Human Apoptotic Nucleosomes (2011) (7)
Theory of Early Molecular Evolution (2006) (7)
Tracing Ancient mRNA Hairpins (2006) (7)
An Eye-Opener to Protein Structures (2002) (7)
Segmented Genome: Elementary Units of Genome Structure (2002) (7)
Nucleosomal DNA Structure (1983) (7)
Horizontal transfer - imperative mission of acellular life forms, Acytota (2016) (6)
Hidden Segmentation of Protein Sequences: Structural Connection with DNA (1995) (6)
Nucleosome repeat lengths and columnar chromatin structure (2016) (6)
Apoptotic cleavage of DNA in human lymphocyte chromatin shows high sequence specificity (2012) (5)
Study of low-melting segments in T2 phage DNA by electron microscopy and the kinetic formaldehyde method. (1972) (5)
Proteomic Code (2004) (5)
DNA AS A LANGUAGE (1993) (5)
Strong nucleosomes of mouse genome including recovered centromeric sequences (2015) (5)
Acytota – associated kingdom of neglected life (2016) (5)
Gap mapping: a paradigm for aligning two sequences. (2003) (5)
A Novel Technique for Detecting Putative Horizontal Gene Transfer in the Sequence Space (2010) (4)
On Nussinov's compilation of eukaryotic transcription initiation sites. (1987) (4)
Taxonomy of 5 S Ribosomal RNA by the Linguistic Technique: Probing with Mitochondrial and Mammalian Sequences (1997) (4)
TA-periodic (“601”-like) centromeric nucleosomes of A. thaliana (2016) (4)
Structural relatedness via flow networks in protein sequence space. (2009) (4)
Columnar structure of SV40 minichromosome (2015) (4)
Genetic Code: Evolution (2008) (3)
Self-inflicted Fear of Evolution (2007) (3)
[Evolution of the genetic code and earliest proteins. Reconstruction from the current sequences]. (2002) (3)
[Relation of polyphenylalanine synthesis in a cell-free system to the proportion of bivalent and monovalent cations]. (1970) (3)
Construction of an algorithm for locating splicing junctions (1984) (3)
Hidden ancient repeats in DNA: mapping and quantification. (2013) (3)
SMOOTH BENDING OF DNA IN CHROMATIN (1983) (2)
Excessive Clustering of Third Codon Position Pyrimidines in Prokaryotes (2008) (2)
Detection of low-melting sites in the phage T2 DNA molecule. (1971) (2)
Valery (Chrom) Ivanov In memoriam (2013) (2)
[Effect of ionizing electromagnetic radiation on DNA in solution and on white blood cells]. (1975) (2)
Reply to commentNucleosome positioning rules: Soft and hard disagreements: Reply to comments on “Cracking the chromatin code: Precise rule of nucleosome positioning” by Edward N. Trifonov (2011) (2)
On the recombinational origin of protein-sequence-subunit structure (1994) (2)
Searching for codes in the sequences (1989) (2)
MS2 RNA has a potential to form an unusually large number of stable hairpins. (1980) (2)
Sequence structure of Lowary/Widom clones forming strong nucleosomes (2016) (2)
Columnar structure of SV 40 minichromosome (2015) (1)
One common structural feature of “words” in protein sequences and human texts (2014) (1)
Towards clarity in a very complex matter: comment on "Sequence-dependent collective properties of DNAs and their role in biological systems" by De Santis and Scipioni. (2013) (1)
[Study by the kinetic formaldehyde method of DNA following gamma-irradiation in vitro]. (1972) (1)
Transcription factors operate TATA switches via rotational remodeling of local columnar chromatin structure (2016) (1)
Strong nucleosomes of mouse genome in recovered centromeric sequences (2016) (1)
Long-range Migration of Electron Excitation Energy Through a DNA Molecule (1972) (1)
Protective rotational positioning of splice junctions in nucleosomes (2010) (1)
Informational structure of genetic sequences (1991) (1)
Sequence Markers of Segmented Protein Structure (1995) (1)
INHERENTLY ClJR\lED DNA AND ITS STRlCIURAL ELEMENTS (1988) (0)
Weak Signal Carried by Chromatin DNA Sequences: Zooming In and Sobering Surprises (2016) (0)
Evolutionary Aspects of Protein Structure and Folding (2004) (0)
Dependence of Poly U-Directed Cell-Free System on Ratios of Divalent and Monovalent Cations (1972) (0)
Editorial Board (2014) (0)
Invited: poetry and prose of the sequences (2003) (0)
Minireview Molecular evolution from abiotic scratch (2002) (0)
[Molecular evolution more than three billion years ago]. (2000) (0)
Sequence sizes of eukaryotic enzymes. (1996) (0)
[DNA structural damage in the tissues of gamma-irradiated animals]. (1973) (0)
Effect of ionizing electromagnetic radiations on DNA in solution and on white blood cells. [X and gamma radiation] (1975) (0)
Periodical sequence pattern hidden in chromatin dna (1991) (0)
Kinetic formaldehyde method to study DNA irradiated in vitro (1972) (0)
Structure ofDNA in Chromatin (1981) (0)
1 Codes of biosequences (0)
Informational structure of genetic sequences and nature of gene splicing (2008) (0)
Henryk (Heini) Eisenberg (1921-2009): From polymer chemistry to halophilic enzymes to chromatin and back. (2013) (0)
Jon Widom, the Scientist (2011) (0)
"601" - like sequences of A. thaliana (2013) (0)
Nucleic Acids Research (2011) (0)
Possibility of nonkinked packing o (2016) (0)
Possibility ofnonkinked packing ofDNA inchromatin (1978) (0)
Nucleosomal TATA-switch (2013) (0)
The long shadow of Lysenko (1983) (0)
Sequence Periodicities in Complete Genomes Reflect Supercoiling (1998) (0)
22 Text segmentation approach reveals simple repeat “fossils” in genomic sequences (2013) (0)
Strong nucleosomes of yeasts (2016) (0)
Gap mapping : A new paradigm for aligning two sequences (2001) (0)
Imperfect complementarity and RNA structure (1985) (0)
Damage to the structure of DNA in the tissues of $gamma$-irradiated animals (1973) (0)

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