Elodie Ghedin
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Canadian American parasitologist and virologist
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Parasitology
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Virology
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Biology
Elodie Ghedin's Degrees
- Bachelors Microbiology McGill University
Why Is Elodie Ghedin Influential?
(Suggest an Edit or Addition)According to Wikipedia, Elodie Ghedin is a Canadian parasitologist and virologist as well as a professor at the New York University Center for Genomics and Systems Biology. Her work focuses on the molecular biology and genomics of the parasites that cause diseases such as elephantiasis, and river blindness, and on the evolution of the influenza virus. She was named a 2011 MacArthur Fellow, a 2012 Kavli Frontier of Science Fellow, and a 2017 American Academy of Microbiology Fellow. She also was Awarded the Chancellor’s Distinguished Research Award in 2010.
Elodie Ghedin's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- The Genome of the African Trypanosome Trypanosoma brucei (2005) (1633)
- The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease (2005) (1341)
- The genome of the blood fluke Schistosoma mansoni (2009) (992)
- Widespread Lateral Gene Transfer from Intracellular Bacteria to Multicellular Eukaryotes (2007) (768)
- Comparative Genomics of Trypanosomatid Parasitic Protozoa (2005) (762)
- Draft Genome of the Filarial Nematode Parasite Brugia malayi (2007) (639)
- Comparison of the respiratory microbiome in healthy nonsmokers and smokers. (2013) (614)
- The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode (2005) (588)
- Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution (2005) (484)
- Whole-Genome Analysis of Human Influenza A Virus Reveals Multiple Persistent Lineages and Reassortment among Recent H3N2 Viruses (2005) (397)
- Taxonomy of the order Mononegavirales: update 2016 (2016) (389)
- The Evolutionary Genetics and Emergence of Avian Influenza Viruses in Wild Birds (2008) (383)
- Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype (2016) (369)
- Viral genome sequencing by random priming methods (2008) (293)
- The human mycobiome in health and disease (2013) (276)
- Multiple Reassortment Events in the Evolutionary History of H1N1 Influenza A Virus Since 1918 (2008) (272)
- Taxonomy of the order Mononegavirales: update 2017 (2017) (236)
- Genome Analysis Linking Recent European and African Influenza (H5N1) Viruses (2007) (228)
- Stochastic Processes Are Key Determinants of Short-Term Evolution in Influenza A Virus (2006) (170)
- Widespread colonization of the lung by Tropheryma whipplei in HIV infection. (2013) (165)
- Quantifying influenza virus diversity and transmission in humans (2016) (163)
- Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans (2011) (157)
- Taxonomy of the order Mononegavirales: update 2018 (2018) (155)
- Global phylogeography and ancient evolution of the widespread human gut virus crAssphage (2019) (148)
- The early diversification of influenza A/H1N1pdm (2009) (147)
- Identification and overexpression of the A2 amastigote-specific protein in Leishmania donovani. (1996) (143)
- Sequence Analysis of In Vivo Defective Interfering-Like RNA of Influenza A H1N1 Pandemic Virus (2013) (138)
- A rapid and label-free platform for virus capture and identification from clinical samples (2019) (125)
- Fungi stabilize connectivity in the lung and skin microbial ecosystems (2018) (122)
- Deep sequencing reveals mixed infection with 2009 pandemic influenza A (H1N1) virus strains and the emergence of oseltamivir resistance. (2011) (118)
- Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals. (2015) (113)
- Topographic diversity of the respiratory tract mycobiome and alteration in HIV and lung disease. (2015) (111)
- Gene synteny and evolution of genome architecture in trypanosomatids. (2004) (110)
- Mixed Infection and the Genesis of Influenza Virus Diversity (2009) (107)
- The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report (2016) (105)
- Molecular Epidemiology of A/H3N2 and A/H1N1 Influenza Virus during a Single Epidemic Season in the United States (2008) (105)
- Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus (2017) (105)
- Role of viral regulatory and accessory proteins in HIV-1 replication. (2004) (105)
- Mimivirus relatives in the Sargasso sea (2005) (104)
- Members of a Large Retroposon Family Are Determinants of Post-Transcriptional Gene Expression in Leishmania (2007) (103)
- A gene family of cathepsin L-like proteases of filarial nematodes are associated with larval molting and cuticle and eggshell remodeling. (2004) (100)
- Biologic, Antigenic, and Full-Length Genomic Characterization of a Bovine-Like Coronavirus Isolated from a Giraffe (2007) (98)
- First sequenced genome of a parasitic nematode. (2004) (98)
- Stage-specific proteomic expression patterns of the human filarial parasite Brugia malayi and its endosymbiont Wolbachia (2011) (98)
- Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds. (2012) (96)
- Helminth Genomics: The Implications for Human Health (2009) (95)
- Mining Predicted Essential Genes of Brugia malayi for Nematode Drug Targets (2007) (95)
- Evolutionary History and Attenuation of Myxoma Virus on Two Continents (2012) (94)
- A Deep Sequencing Approach to Comparatively Analyze the Transcriptome of Lifecycle Stages of the Filarial Worm, Brugia malayi (2011) (92)
- Deliberate Attenuation of Chikungunya Virus by Adaptation to Heparan Sulfate-Dependent Infectivity: A Model for Rational Arboviral Vaccine Design (2014) (86)
- Antibody response against a Leishmania donovani amastigote-stage-specific protein in patients with visceral leishmaniasis (1997) (86)
- The genome of Onchocerca volvulus, agent of river blindness (2016) (86)
- The microbiome and the lung. (2014) (85)
- Bovine-Like Coronaviruses Isolated from Four Species of Captive Wild Ruminants Are Homologous to Bovine Coronaviruses, Based on Complete Genomic Sequences (2006) (84)
- Development of high-yield influenza A virus vaccine viruses (2015) (78)
- Correlation of the lung microbiota with metabolic profiles in bronchoalveolar lavage fluid in HIV infection (2016) (77)
- Genomic and Protein Structural Maps of Adaptive Evolution of Human Influenza A Virus to Increased Virulence in the Mouse (2011) (77)
- Secretory and Endocytic Pathways Converge in a Dynamic Endosomal System in a Primitive Protozoan (2001) (73)
- The sequence and analysis of Trypanosoma brucei chromosome II. (2003) (72)
- Identification of mammalian-adapting mutations in the polymerase complex of an avian H5N1 influenza virus (2015) (72)
- Myxoma Virus and the Leporipoxviruses: An Evolutionary Paradigm (2015) (72)
- A Dynamic Model of Guard Cell Abscisic Acid Signaling (2006) (69)
- Presence of oseltamivir-resistant pandemic A/H1N1 minor variants before drug therapy with subsequent selection and transmission. (2012) (69)
- Microbial signatures in the lower airways of mechanically ventilated COVID-19 patients associated with poor clinical outcome (2021) (67)
- Phylogeography of the Spring and Fall Waves of the H1N1/09 Pandemic Influenza Virus in the United States (2010) (67)
- Taxonomy of the order Mononegavirales: second update 2018 (2019) (66)
- Quasispecies of bovine enteric and respiratory coronaviruses based on complete genome sequences and genetic changes after tissue culture adaptation (2007) (62)
- Mesoniviruses are mosquito-specific viruses with extensive geographic distribution and host range (2014) (62)
- The lung mycobiome in the next-generation sequencing era (2017) (58)
- Defining the risk of SARS-CoV-2 variants on immune protection (2022) (58)
- The administration of intranasal live attenuated influenza vaccine induces changes in the nasal microbiota and nasal epithelium gene expression profiles (2015) (57)
- Intrahost Dynamics of Antiviral Resistance in Influenza A Virus Reflect Complex Patterns of Segment Linkage, Reassortment, and Natural Selection (2015) (57)
- Dissection of the Functional Domains of theLeishmania Surface Membrane 3′-Nucleotidase/Nuclease, a Unique Member of the Class I Nuclease Family* (2000) (56)
- Complete genomic sequences, a key residue in the spike protein and deletions in nonstructural protein 3b of US strains of the virulent and attenuated coronaviruses, transmissible gastroenteritis virus and porcine respiratory coronavirus (2006) (55)
- The genome of Brugia malayi - all worms are not created equal. (2009) (53)
- Molecular characterization of a new species in the genus Alphacoronavirus associated with mink epizootic catarrhal gastroenteritis. (2011) (51)
- Identification of non-autonomous non-LTR retrotransposons in the genome of Trypanosoma cruzi. (2002) (51)
- Cyclic Avian Mass Mortality in the Northeastern United States Is Associated with a Novel Orthomyxovirus (2014) (46)
- Brugia malayi Gene Expression in Response to the Targeting of the Wolbachia Endosymbiont by Tetracycline Treatment (2009) (46)
- Stage-Specific Transcriptome and Proteome Analyses of the Filarial Parasite Onchocerca volvulus and Its Wolbachia Endosymbiont (2016) (43)
- Arboretum and Puerto Almendras viruses: two novel rhabdoviruses isolated from mosquitoes in Peru. (2014) (42)
- Transcriptomes and pathways associated with infectivity, survival and immunogenicity in Brugia malayi L3 (2009) (41)
- Extensive Geographical Mixing of 2009 Human H1N1 Influenza A Virus in a Single University Community (2011) (40)
- Evolution of non-LTR retrotransposons in the trypanosomatid genomes: Leishmania major has lost the active elements. (2006) (39)
- Role of transposable elements in trypanosomatids. (2008) (39)
- Molecular Dissection of the Functional Domains of a Unique, Tartrate-resistant, Surface Membrane Acid Phosphatase in the Primitive Human Pathogen Leishmania donovani * (2002) (37)
- Longitudinal analysis of the lung microbiota of cynomolgous macaques during long-term SHIV infection (2016) (37)
- The ingi and RIME non-LTR retrotransposons are not randomly distributed in the genome of Trypanosoma brucei. (2003) (37)
- Defining Brugia malayi and Wolbachia symbiosis by stage-specific dual RNA-seq (2017) (37)
- Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection (2020) (34)
- Use of bronchoalveolar lavage to assess the respiratory microbiome: signal in the noise. (2013) (34)
- Inducible Expression of Suicide Genes in Leishmania donovani Amastigotes* (1998) (33)
- A Potential Role for the Interaction of Wolbachia Surface Proteins with the Brugia malayi Glycolytic Enzymes and Cytoskeleton in Maintenance of Endosymbiosis (2013) (33)
- A large-scale immuno-epidemiological simulation of influenza A epidemics (2014) (32)
- Genome Scale Evolution of Myxoma Virus Reveals Host-Pathogen Adaptation and Rapid Geographic Spread (2013) (32)
- The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion. (2006) (31)
- Cell-to-Cell Variation in Defective Virus Expression and Effects on Host Responses during Influenza Virus Infection (2018) (30)
- Differential HHV‐6A gene expression in T cells and primary human astrocytes based on multi‐virus array analysis (2006) (30)
- The role of RNA folding free energy in the evolution of the polymerase genes of the influenza A virus (2009) (29)
- Yearlong COVID-19 Infection Reveals Within-Host Evolution of SARS-CoV-2 in a Patient With B-Cell Depletion (2021) (28)
- Mammalian Adaptation in the PB2 Gene of Avian H5N1 Influenza Virus (2013) (27)
- Microbial Composition of the Human Nasopharynx Varies According to Influenza Virus Type and Vaccination Status (2019) (27)
- Sex chromosome evolution in parasitic nematodes of humans (2020) (27)
- In vivo transfection of developmentally competent Brugia malayi infective larvae. (2011) (26)
- Evolution and Cryo-electron Microscopy Capsid Structure of a North American Bat Adenovirus and Its Relationship to Other Mastadenoviruses (2016) (26)
- Niakha virus: a novel member of the family Rhabdoviridae isolated from phlebotomine sandflies in Senegal. (2013) (26)
- Mechanisms of HTLV-1 transformation. (2004) (26)
- GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database (2009) (26)
- Multiplex Reverse Transcription-PCR for Simultaneous Surveillance of Influenza A and B Viruses (2017) (25)
- Glucose and Glycogen Metabolism in Brugia malayi Is Associated with Wolbachia Symbiont Fitness (2016) (25)
- Correction: Stochastic Processes Are Key Determinants of Short-Term Evolution in Influenza A Virus (2006) (24)
- Filarial and Wolbachia genomics (2012) (24)
- Viral evolution: beyond drift and shift. (2015) (23)
- Year-long COVID-19 infection reveals within-host evolution of SARS-CoV-2 in a patient with B cell depletion (2021) (23)
- Unseasonal Transmission of H3N2 Influenza A Virus During the Swine-Origin H1N1 Pandemic (2010) (22)
- Kolente virus, a rhabdovirus species isolated from ticks and bats in the Republic of Guinea. (2013) (22)
- Comparative Analysis of the Complete Genome Sequence of the California MSW Strain of Myxoma Virus Reveals Potential Host Adaptations (2013) (22)
- Translating microbiome futures (2018) (22)
- Getting the flu: 5 key facts about influenza virus evolution (2017) (21)
- An early warning system for emerging SARS-CoV-2 variants (2022) (19)
- Genomic and phenotypic characterization of myxoma virus from Great Britain reveals multiple evolutionary pathways distinct from those in Australia (2017) (19)
- Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials. (2016) (19)
- Functional lower airways genomic profiling of the microbiome to capture active microbial metabolism (2021) (19)
- Initial Mapping of the New York City Wastewater Virome (2020) (19)
- Erratum: Stochastic processes are key determinants of short-term evolution in influenza A virus (PLoS pathogens 2, 12 DOI: 10.1371/journal.ppat.0020125) (2006) (18)
- Comparison of the nasopharynx microbiome between influenza and non‐influenza cases of severe acute respiratory infections: A pilot study (2018) (18)
- Use of a multi-virus array for the study of human viral and retroviral pathogens: gene expression studies and ChIP-chip analysis (2004) (17)
- Potential involvement of Brugia malayi cysteine proteases in the maintenance of the endosymbiotic relationship with Wolbachia (2014) (17)
- Network inference from multimodal data: A review of approaches from infectious disease transmission (2016) (16)
- Sequences necessary for trans-splicing in transiently transfected Brugia malayi. (2007) (16)
- Profiling the airway in the macaque model of tuberculosis reveals variable microbial dysbiosis and alteration of community structure (2018) (16)
- CRISPR-mediated Transfection of Brugia malayi (2020) (16)
- Interaction of a Wolbachia WSP-like protein with a nuclear-encoded protein of Brugia malayi. (2011) (16)
- Clinical, Virologic, and Immunologic Evaluation of Symptomatic Coronavirus Disease 2019 Rebound Following Nirmatrelvir/Ritonavir Treatment (2022) (15)
- Prediction pipeline for discovery of regulatory motifs associated with Brugia malayi molting (2019) (15)
- A2rel: a constitutively expressed Leishmania gene linked to an amastigote-stage-specific gene. (1998) (15)
- Evolution of Influenza B Virus in Kuala Lumpur, Malaysia, between 1995 and 2008 (2015) (14)
- Functional analysis of putative operons in Brugia malayi. (2010) (14)
- Pyruvate produced by Brugia spp. via glycolysis is essential for maintaining the mutualistic association between the parasite and its endosymbiont, Wolbachia (2019) (14)
- Glycomic analysis of host response reveals high mannose as a key mediator of influenza severity (2020) (14)
- Integrative gene network analysis identifies key signatures, intrinsic networks and host factors for influenza virus A infections (2017) (13)
- Age-related pathology associated with H1N1 A/California/07/2009 influenza virus infection. (2019) (13)
- Characterization of five unclassified orthobunyaviruses (Bunyaviridae) from Africa and the Americas. (2017) (12)
- iGenomics: Comprehensive DNA sequence analysis on your Smartphone (2020) (12)
- A virus with big ambitions. (2005) (12)
- Lessons from the genomes and transcriptomes of filarial nematodes. (2017) (11)
- The role of 'omics' in the quest to eliminate human filariasis (2017) (11)
- Glycomic analysis of host-response reveals high mannose as a key mediator of influenza severity (2020) (11)
- Genes encoding putative biogenic amine receptors in the parasitic nematode Brugia malayi (2007) (11)
- Whole genome analysis of sierra nevada virus, a novel mononegavirus in the family nyamiviridae. (2014) (11)
- Genetic diversity of the 2013–14 human isolates of influenza H7N9 in China (2015) (10)
- The symbiotic relationship between filarial parasitic nematodes and their Wolbachia endosymbionts - a resource for a new generation of control measures. (2008) (10)
- Accurate virus identification with interpretable Raman signatures by machine learning (2021) (9)
- Shared data are key to beating threat from flu (2006) (9)
- Age-Dependent Glycomic Response to the 2009 Pandemic H1N1 Influenza Virus and Its Association with Disease Severity (2020) (9)
- Quantifying between-Host Transmission in Influenza Virus Infections. (2019) (9)
- Nearly Complete Genome Sequence of Brugia malayi Strain FR3 (2020) (8)
- LdARF1 in Trafficking and Structural Maintenance of the trans‐Golgi Cisternal Network in the Protozoan Pathogen Leishmania donovani (2004) (8)
- Development and Characterization of a Reverse-Genetics System for Influenza D Virus (2019) (8)
- COVID-19 redux: clinical, virologic, and immunologic evaluation of clinical rebound after nirmatrelvir/ritonavir (2022) (8)
- Taxonomy of the order Mononegavirales: second update 2018 (2019) (7)
- Using Clinical Research Networks to Assess Severity of an Emerging Influenza Pandemic (2018) (7)
- New Proteomic Signatures to Distinguish Between Zika and Dengue Infections (2021) (7)
- The early diversification of influenza A / H 1 N 1 pdm November 5 , 2009 (2017) (7)
- Functional analysis of microRNA activity in Brugia malayi. (2015) (7)
- Detection of HHV-6B in post-mortem central nervous system tissue of a post-bone marrow transplant recipient: a multi-virus array analysis (2006) (7)
- Comparison Of The Respiratory Microbiome In HIV-Infected And HIV-Uninfected Individuals (2012) (7)
- Tropheryma whipplei colonization in HIV-infected individuals is not associated with lung function or inflammation (2018) (6)
- Emerging and resistant infections. (2014) (6)
- Modeling the metabolic interplay between a parasitic worm and its bacterial endosymbiont allows the identification of novel drug targets (2019) (6)
- Mapping the evolutionary landscape of Zika virus infection in immunocompromised mice (2019) (6)
- Genomic and proteomic approaches for Chagas’ disease: critical analysis of diagnostic methods (2005) (5)
- Correction: Molecular Epidemiology of A/H3N2 and A/H1N1 Influenza Virus during a Single Epidemic Season in the United States (2008) (5)
- Analysis of transcriptional regulation of tetracycline responsive genes in Brugia malayi. (2011) (5)
- Panning for molecular gold in whipworm genomes (2014) (5)
- Large-scale sequencing and the natural history of model human RNA viruses. (2012) (4)
- Measuring associations between the microbiota and repeated measures of continuous clinical variables using a lasso-penalized generalized linear mixed model (2018) (4)
- ICTV Virus Taxonomy Profile: Nyamiviridae (2017) (4)
- Gemina: A Web-Based Epidemiology and Genomic Metadata System Designed to Identify Infectious Agents (2007) (4)
- Correction for Sobel Leonard et al., “Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus” (2019) (3)
- Identification and analysis of ingi-related retroposons in the trypanosomatid genomes. (2015) (3)
- Reply to ‘Reconciling disparate estimates of viral genetic diversity during human influenza infections’ (2019) (3)
- Quality of drinking water sources in two sub-desert sahelian areas in north-western Senegal (1993) (3)
- Microbial signatures in the lower airways of mechanically ventilated COVID19 patients associated with poor clinical outcome (2021) (3)
- Host response: Pregnancy impairs flu defences (2017) (3)
- Evaluation of determinants of the serological response to the quadrivalent split‐inactivated influenza vaccine (2022) (3)
- Structurally Conserved Domains between Flavivirus and Alphavirus Fusion Glycoproteins Contribute to Replication and Infectious-Virion Production (2021) (3)
- Mesoniviruses are mosquito-specific viruses with extensive geographic distribution and host range (2014) (2)
- Diversity and selection of SARS-CoV-2 minority variants in the early New York City outbreak (2021) (2)
- The Human Lung Microbiome (2010) (2)
- Common and species-specific molecular signatures, networks, and regulators of influenza virus infection in mice, ferrets, and humans (2022) (2)
- Sex disparities in influenza: A multiscale network analysis (2021) (2)
- A Meta-Analysis of Wolbachia Transcriptomics Reveals a Stage-Specific Wolbachia Transcriptional Response Shared Across Different Hosts (2020) (2)
- How Does Large-Scale Genomic Analysis Shape Our Understanding of COVID Variants in Real Time? (2021) (2)
- Fungi stabilize connectivity in the lung and skin microbial ecosystems (2018) (1)
- Abstracts of NEMASYM: The Third Nematode-Bacteria Symbioses Research Coordination Network Meeting (2011) (1)
- Trypanosoma brucei The Genome of the African Trypanosome (2007) (1)
- The human mycobiome in health and disease (2013) (1)
- Longitudinal analysis of the lung microbiota of cynomolgous macaques during long-term SHIV infection (2016) (1)
- Influenza A virus reassortment is strain dependent (2022) (1)
- Within-host genetic diversity of SARS-CoV-2 in the context of large-scale hospital-associated genomic surveillance (2022) (1)
- The administration of intranasal live attenuated influenza vaccine induces changes in the nasal microbiota and nasal epithelium gene expression profiles (2015) (1)
- Detection of SARS-CoV2 variants by Mesa Accula (2021) (1)
- High-resolution proteomics identifies potential new markers of Zika and dengue infections (2019) (1)
- Sex-specific glycosylation of secreted immunomodulatory proteins in the filarial nematode Brugia malayi (2021) (1)
- Human H1N1 Influenza A Virus in a Single Extensive Geographical Mixing of 2009 (2011) (0)
- Taxonomy of the order Mononegavirales: update 2017 (2017) (0)
- Additional file 2: Figure S2. of The administration of intranasal live attenuated influenza vaccine induces changes in the nasal microbiota and nasal epithelium gene expression profiles (2015) (0)
- Miniature spatial transcriptomics for studying parasite-endosymbiont relationships at the micro scale (2022) (0)
- Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection (2020) (0)
- Evaluation of determinants of the serological response to the split-inactivated influenza vaccine (2021) (0)
- Arbovirus Genomics and Metagenomics (2016) (0)
- US National Institutes of Health Prioritization of SARS-CoV-2 Variants (2023) (0)
- Rapid Geographic Spread Reveals Host-Pathogen Adaptation and Genome Scale Evolution of Myxoma Virus (2013) (0)
- Additional file 1: Figure S1. of The administration of intranasal live attenuated influenza vaccine induces changes in the nasal microbiota and nasal epithelium gene expression profiles (2015) (0)
- Profiling the airway in the macaque model of tuberculosis reveals variable microbial dysbiosis and alteration of community structure (2018) (0)
- Evaluation of the Airway Viral Load in Acute SARS-CoV2 Infection as a Predictor of Clinical Outcome (2021) (0)
- It's a small world after all-viral genomics and the global dominance of viruses. (2011) (0)
- Sex chromosome evolution in parasitic nematodes of humans (2020) (0)
- Principle component analysis of biological replicates based on stage-specific expression. (2020) (0)
- How antibiotic resistance is shaped by host-microbiome interactions in influenza (2020) (0)
- Global phylogeography and ancient evolution of the widespread human gut virus crAssphage (2019) (0)
- Author's response to reviews Title:A large-scale immuno-epidemiological simulation of influenza A epidemics Authors: (2014) (0)
- Sequential Transmission of Influenza Viruses in Ferrets Does Not Enhance Infectivity and Does Not Predict Transmissibility in Humans (2022) (0)
- 100-year-old pandemic flu viruses yield new genomes (2022) (0)
- Structurally conserved domains between flavivirus and alphavirus fusion glycoproteins contribute to replication in mammals and infectious virion production (2021) (0)
- Evaluation of the Lower Airway Microbiota in Patients with Severe SARS-CoV2 (2021) (0)
- Author response: Modeling the metabolic interplay between a parasitic worm and its bacterial endosymbiont allows the identification of novel drug targets (2019) (0)
- Bordetella bronchiseptica-Mediated Interference Prevents Influenza A Virus Replication in the Murine Nasal Cavity (2023) (0)
- Metagenomic sequencing of the bronchoalveolar lavage extracellular virome and cellular transcriptome of sarcoidosis patients does not detect rubella virus (2022) (0)
- Successful lung transplantation using an allograft from a COVID-19–recovered donor: a potential role for subgenomic RNA to guide organ utilization (2023) (0)
- Linking population-level and host-level models of influenza A virus (2012) (0)
- Vaccination History, Body Mass Index, Age, and Baseline Gene Expression Predict Influenza Vaccination Outcomes (2022) (0)
- Inferring natural influenza transmission bottleneck sizes from sequencing data (2018) (0)
- Correlation of the lung microbiota with metabolic profiles in bronchoalveolar lavage fluid in HIV infection (2016) (0)
- CRISPR arrays as high-resolution markers to track microbial transmission during influenza infection (2022) (0)
- Integrative gene network analysis identifies key signatures, intrinsic networks and host factors for influenza virus A infections (2017) (0)
- The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report (2016) (0)
- High-Throughput Sequencing Of MicroRNA In Idiopathic Pulmonary Fibrosis (2011) (0)
- List of statistically significant de novo motifs identified. (2020) (0)
- Taxonomy of the order Mononegavirales: update 2018 (2018) (0)
- Metatranscriptomic Reveals Functional Abnormalities of Lower Airway Dysbiosis Signatures Identified in Humans (2019) (0)
- Functional Microbiomic Approaches Using Lower Airway Samples Identify a Subset of Lung Microbial Communities with Evidence of Active Microbial Metabolism (2020) (0)
- Additional file 4: Figure S4. of The administration of intranasal live attenuated influenza vaccine induces changes in the nasal microbiota and nasal epithelium gene expression profiles (2015) (0)
- Taxonomy of the order Mononegavirales: update 2016 (2016) (0)
- Title Genetic diversity of the 2013 – 14 human isolates of influenzaH 7 N 9 in China (2015) (0)
- Predicting seasonal influenza vaccine response using systemic gene expression profiling (2022) (0)
- Reduced inflammatory response and promoted multiciliated cell differentiation in mice protected by defective interfering influenza virus (2022) (0)
- Appendix (2018) (0)
- Measuring associations between the microbiota and repeated measures of continuous clinical variables using a lasso-penalized generalized linear mixed model (2018) (0)
- A multi-reservoir model of influenza evolution. (2009) (0)
- Tracking the emergence of antigenic variants in influenza A virus epidemics in Brazil (2023) (0)
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