Emmanuel Paradis

Q: What Schools Are Affiliated With Emmanuel Paradis

Emmanuel Paradis is affiliated with the following schools: University of California, Berkeley, University of East Anglia, Université Paris Cité, University of Montpellier, Stanford University

Emmanuel Paradis's AcademicInfluence.com Rankings

Emmanuel Paradis

Biology

#11659

World Rank

#15071

Historical Rank

Genetics

#1267

World Rank

#1369

Historical Rank

biology Degrees

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Biology

Emmanuel Paradis's Degrees

PhD Biology Université Paris Cité
Masters Genetics Université Paris Cité
Bachelors Biochemistry Université Paris Cité

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Emmanuel Paradis's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

APE: Analyses of Phylogenetics and Evolution in R language (2004) (10496)
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R (2018) (3624)
pegas: an R package for population genetics with an integrated-modular approach (2010) (1561)
Patterns of natal and breeding dispersal in birds (1998) (760)
Analysis of Phylogenetics and Evolution with R (2006) (323)
Beyond the Mediterranean peninsulas: evidence of central European glacial refugia for a temperate forest mammal species, the bank vole (Clethrionomys glareolus) (2005) (250)
ape 3.0: New tools for distance-based phylogenetics and evolutionary analysis in R (2012) (248)
Analysis of comparative data using generalized estimating equations. (2002) (241)
Revealing the demographic histories of species using DNA sequences (2001) (190)
Mitochondrial phylogeography of the Woodmouse (Apodemus sylvaticus) in the Western Palearctic region (2003) (189)
Effects of phylogenetic reconstruction method on the robustness of species delimitation using single-locus data (2014) (171)
Independence between developmental stability and canalization in the skull of the house mouse (2000) (162)
Dispersal and spatial scale affect synchrony in spatial population dynamics (1999) (141)
Molecular dating of phylogenies by likelihood methods: a comparison of models and a new information criterion. (2013) (139)
Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts (2014) (133)
A geometric morphometric assessment of the effects of environment and cladogenesis on the evolution of the turtle shell (2003) (131)
Population Genetic Structure (2020) (127)
Phylogenetic Analysis in R (2015) (120)
The evolutionary radiation of Arvicolinae rodents (voles and lemmings): relative contribution of nuclear and mitochondrial DNA phylogenies (2006) (118)
Ecological correlates and evolutionary divergence in the skull of turtles: a geometric morphometric assessment. (2004) (114)
Phylogeographic history of the yellow-necked fieldmouse (Apodemus flavicollis) in Europe and in the Near and Middle East. (2004) (114)
Consequences of large‐scale processes for the conservation of bird populations (2000) (110)
SPATIAL SYNCHRONY IN POPULATIONS OF BIRDS: EFFECTS OF HABITAT, POPULATION TREND, AND SPATIAL SCALE (2000) (101)
Assessing temporal variations in diversification rates from phylogenies: estimation and hypothesis testing (1997) (100)
STATISTICAL ANALYSIS OF DIVERSIFICATION WITH SPECIES TRAITS (2005) (93)
Modeling large-scale dispersal distances (2002) (92)
Analyses of Phylogenetics and Evolution (2015) (65)
Can extinction rates be estimated without fossils? (2004) (65)
The virtues of gaps: xenarthran (Edentate) monophyly supported by a unique deletion in alpha A-crystallin. (1999) (61)
Large‐scale spatial variation in the breeding performance of song thrushes Turdus philomelos and blackbirds T. merula in Britain (2000) (60)
Detecting Shifts in Diversification Rates without Fossils (1998) (60)
Phylogeography of Toxoplasma gondii points to a South American origin. (2017) (49)
Cryptic Diversity in Indo-Australian Rainbowfishes Revealed by DNA Barcoding: Implications for Conservation in a Biodiversity Hotspot Candidate (2012) (48)
Timetree of Aselloidea reveals species diversification dynamics in groundwater. (2013) (44)
Moran’s Autocorrelation Coeﬃcient in Comparative Methods (2009) (43)
Parallel life history evolution in mouthbrooding cichlids from the African Great Lakes (2008) (42)
Survival, immigration and habitat quality in the Mediterranean pine vole (1995) (38)
Analysis of haplotype networks: The randomized minimum spanning tree method (2018) (38)
Community assembly and diversification in Indo-Pacific coral reef fishes (2011) (34)
Analysis of diversification: combining phylogenetic and taxonomic data (2003) (33)
TIME‐DEPENDENT SPECIATION AND EXTINCTION FROM PHYLOGENIES: A LEAST SQUARES APPROACH (2011) (33)
Explaining global‐scale diversification patterns in actinopterygian fishes (2017) (32)
The phylogenetic structure of habitat shift and morphological convergence in Asian Clarias (Teleostei, Siluriformes: Clariidae) (2009) (31)
Testing for Constant Diversification Rates Using Molecular Phylogenies: A General Approach Based on Statistical Tests for Goodness of Fit (1998) (31)
ESTIMATION OF SEX-AND AGE-RELATED SURVIVAL RATES IN A MICROTINE POPULATION (1993) (31)
Exploring density‐dependent relationships in demographic parameters in populations of birds at a large spatial scale (2002) (30)
ASYMMETRIES IN PHYLOGENETIC DIVERSIFICATION AND CHARACTER CHANGE CAN BE UNTANGLED (2007) (28)
Interactions between spatial and temporal scales in the evolution of dispersal rate (2019) (27)
An Introduction to the Phylogenetic Comparative Method (2014) (26)
SHIFT IN DIVERSIFICATION IN SISTER‐CLADE COMPARISONS: A MORE POWERFUL TEST (2012) (26)
Description of Melanotaenia fasinensis, a new species of rainbowfish (Melanotaeniidae) from West Papua, Indonesia with comments on the rediscovery of M. ajamaruensis and the endangered status of M. parva (2010) (22)
apex: phylogenetics with multiple genes (2016) (20)
Demography of a mediterranean microtine: the Mediterranean pine vole,Microtus duodecimcostatus (1993) (20)
Metapopulations and Chaos: On the Stabilizing Influence of Dispersal (1997) (20)
DNA Metabarcoding of Amazonian Ichthyoplankton Swarms (2017) (17)
Linking genomics and population genetics with R (2017) (17)
Mitochondrial genomic divergence in coelacanths (Latimeria): slow rate of evolution or recent speciation? (2010) (17)
Homogeneity of fossil assemblages extracted from mine dumps: an analysis of Plio-Pleistocene fauna from South African caves (2005) (15)
Capture-recapture study of a population of the Mediterranean Pine vole (Microtus duodecimcostatus) in Southern France (1992) (14)
Nonlinear relationship between biodiversity and human population density: evidence from Southeast Asia (2018) (13)
Evaluating alternative explanations for an association of extinction risk and evolutionary uniqueness in multiple insular lineages (2018) (12)
Assessment of habitat quality in the Mediterranean pine vole (Microtus duodecimcostatus) by the study of survival rates (1995) (12)
Multidimensional Scaling With Very Large Datasets (2018) (11)
pegas: Population and Evolutionary Genetics Analysis System (2020) (11)
Towards an integrated ecosystem of R packages for the analysis of population genetic data (2017) (11)
A thirteen-million-year divergence between two lineages of Indonesian coelacanths (2020) (11)
Population and Evolutionary Genetics Analysis System (2015) (11)
The distribution of branch lengths in phylogenetic trees. (2016) (7)
Random phylogenies and the distribution of branching times. (2015) (7)
Tempo and rates of diversification in the South American cichlid genus Apistogramma (Teleostei: Perciformes: Cichlidae) (2017) (7)
Forest gains and losses in Southeast Asia over 27 years: The slow convergence towards reforestation (2021) (7)
Analyses of Phylogenetics and Evolution [R package ape version 5.4-1] (2020) (6)
Body mass dynamics in the Mediterranean pine vole Microtus duodecimcostatus (1998) (6)
Simulation of Phylogenetic Data (2014) (5)
Large-scale reptile extinctions following European colonization of the Guadeloupe Islands (2021) (5)
Modelling transition in land cover highlights forest losses and gains in Southeast Asia (2020) (5)
QUANTIFYING VARIATION IN SPECIATION AND EXTINCTION RATES WITH CLADE DATA (2013) (4)
Phylogenetic Data in R (2012) (4)
Patterns and drivers of genetic diversity among Felidae species (2021) (3)
Chaos and scale. (1995) (3)
Modelling the geographical distributions of one native and two introduced species of crayfish in the French Alps (2020) (3)
Population Genomics with R (2020) (3)
Seed Size Variation of Trees and Lianas in a Tropical Forest of Southeast Asia: Allometry, Phylogeny, and Seed Trait - Plant Functional Trait Relationships (2022) (3)
Probabilistic unsupervised classification for large-scale analysis of spectral imaging data (2022) (2)
A review of computer tools for prediction of ecosystems and populations: We need more open-source software (2020) (2)
Confidence intervals in molecular dating by maximum likelihood. (2022) (2)
Geographical Structure (2020) (2)
Analysis of Macroevolution with Phylogenies (2012) (2)
INVESTIGATION ON BIODIVERSITY AND CONSERVATION OF FRESHWATER FISHES IN INDONESIA (2012) (1)
Publisher Correction: A thirteen-million-year divergence between two lineages of Indonesian coelacanths (2020) (1)
Correction for Debat et al., Independence between developmental stability and canalization in the skull of the house mouse (2001) (1)
Long lifespan in a population of Microtus (Pitymys) duodecimcostatus (1992) (1)
Linkage Disequilibrium and Haplotype Structure (2020) (0)
General Biology (2010) (0)
Population and Evolutionary Genetics Analysis System [R package pegas version 0.14] (2020) (0)
Developing and Implementing Phylogenetic Methods in R (2012) (0)
A thirteen-million-year divergence between two lineages of Indonesian coelacanths (2020) (0)
Information-energy equivalence and the emergence of self-replicating biological systems. (2023) (0)
Reduced multidimensional scaling (2021) (0)
Reduced multidimensional scaling (2021) (0)
MCMC Algorithms for the Coalescent [R package coalescentMCMC version 0.4-1] (2015) (0)
Diversification of terrestrial and marine biotas in the Southwest Indian Ocean (Program ANR BIOTAS) (2008) (0)
Date/Publication 2013-01-21 14:52:45 (2013) (0)
Simulating Phylogenies and Evolutionary Data (2012) (0)
Natural Selection (2020) (0)
van Dijk et al Data Set (2009) (0)
First Steps in R for Phylogeneticists (2012) (0)
Data Exploration and Summaries (2020) (0)
Comparative methods in R hackathon (2008) (0)
Past Demographic Events (2020) (0)
Nonlinear relationship between biodiversity and human population density: evidence from Southeast Asia (2018) (0)
Running Coalescent Analyses With coalescentMCMC (2012) (0)
MCMC Algorithms for the Coalescent (2015) (0)
Modelling transition in land cover highlights forest losses and gains in Southeast Asia (2020) (0)
Reconstructing Evolution: New Mathematical and Computational Advances edited by Gascuel, O. and Steel, M. (2008) (0)
Data Acquisition (2020) (0)
Data from: DNA metabarcoding of Amazonian ichthyoplankton swarms (2016) (0)
A predictive model of the impact of urbanization on bacterial loads in watersheds (2021) (0)
Data Manipulation (2020) (0)
Genomic Data in R (2020) (0)

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What Schools Are Affiliated With Emmanuel Paradis?

Emmanuel Paradis is affiliated with the following schools: