Erez Lieberman Aiden
American scientist
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Computer Science Mathematics
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(Suggest an Edit or Addition)According to Wikipedia, Erez Lieberman Aiden is an American research scientist active in multiple fields related to applied mathematics. He is an associate professor at the Baylor College of Medicine, and formerly a fellow at the Harvard Society of Fellows and visiting faculty member at Google. He is an adjunct assistant professor of computer science at Rice University. Using mathematical and computational approaches, he has studied evolution in a range of contexts, including that of networks through evolutionary graph theory and languages in the field of culturomics. He has published scientific articles in a variety of disciplines.
Erez Lieberman Aiden's Published Works
Published Works
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping (2014) (5193)
- Genome-wide maps of chromatin state in pluripotent and lineage-committed cells (2007) (4164)
- Quantitative Analysis of Culture Using Millions of Digitized Books (2011) (2018)
- A simple rule for the evolution of cooperation on graphs and social networks (2006) (1721)
- Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments. (2016) (1405)
- Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes (2015) (1265)
- Evolutionary dynamics on graphs (2005) (1178)
- Cohesin Loss Eliminates All Loop Domains (2017) (1140)
- De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds (2017) (837)
- Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom. (2016) (820)
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping (2015) (480)
- Activity-by-Contact model of enhancer-promoter regulation from thousands of CRISPR perturbations (2019) (415)
- Quantifying the evolutionary dynamics of language (2007) (370)
- The Energetics and Physiological Impact of Cohesin Extrusion (2018) (321)
- Improved reference genome of Aedes aegypti informs arbovirus vector control (2018) (316)
- The expanding scope of DNA sequencing (2012) (305)
- The genome sequence of segmental allotetraploid peanut Arachis hypogaea (2019) (303)
- Genome Organization Drives Chromosome Fragility (2017) (268)
- Transferable model for chromosome architecture (2016) (232)
- Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture (2016) (216)
- Static and dynamic DNA loops form AP-1 bound activation hubs during macrophage development (2017) (195)
- Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling (2018) (191)
- The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000 (2018) (182)
- Juicebox.js Provides a Cloud-Based Visualization System for Hi-C Data (2017) (180)
- De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture (2017) (162)
- Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation. (2017) (147)
- A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers (2019) (137)
- Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map (2017) (126)
- Genetic determinants of co-accessible chromatin regions in activated T cells across humans (2018) (103)
- The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination (2019) (91)
- Uncharted: Big Data as a Lens on Human Culture (2013) (85)
- ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL (2019) (79)
- 3D genomics across the tree of life reveals condensin II as a determinant of architecture type (2021) (71)
- Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus) (2017) (69)
- The Energetics and Physiological Impact of Cohesin Extrusion (2018) (63)
- The Earth BioGenome Project 2020: Starting the clock (2022) (58)
- Multiomic Profiling Identifies cis-Regulatory Networks Underlying Human Pancreatic β Cell Identity and Function (2019) (52)
- Large DNA Methylation Nadirs Anchor Chromatin Loops Maintaining Hematopoietic Stem Cell Identity. (2020) (49)
- Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals (2020) (42)
- The gene-rich genome of the scallop Pecten maximus (2020) (36)
- CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions (2021) (35)
- A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing (2020) (35)
- CTCF looping is established during gastrulation in medaka embryos (2018) (32)
- Robust CTCF-Based Chromatin Architecture Underpins Epigenetic Changes in the Heart Failure Stress–Gene Response (2019) (28)
- Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C (2020) (28)
- Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control (2017) (28)
- Zoom! (2011) (26)
- Chromatin architecture transitions from zebrafish sperm through early embryogenesis (2021) (24)
- Exploring chromosomal structural heterogeneity across multiple cell lines (2020) (24)
- Topologically Associated Domains Delineate Susceptibility to Somatic Hypermutation (2019) (24)
- Chromatin Is Frequently Unknotted at the Megabase Scale (2019) (22)
- Cohesin loss eliminates all loop domains, leading to links among superenhancers and downregulation of nearby genes (2017) (22)
- Cohesin depleted cells rebuild functional nuclear compartments after endomitosis (2019) (20)
- Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations (2019) (18)
- Genome-wide diversity in the California condor tracks its prehistoric abundance and decline (2021) (18)
- Somatic Rearrangement in B Cells: It’s (Mostly) Nuclear Physics (2015) (16)
- Fine-mapping of nuclear compartments using ultra-deep Hi-C shows that active promoter and enhancer elements localize in the active A compartment even when adjacent sequences do not (2021) (16)
- Chromosomal-level genome assembly of the scimitar-horned oryx: insights into diversity and demography of a species extinct in the wild (2019) (16)
- Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome (2020) (16)
- A Cell type-specific Class of Chromatin Loops Anchored at Large DNA Methylation Nadirs (2017) (14)
- Hi-C yields chromosome-length scaffolds for a legume genome, Trifolium subterraneum (2018) (14)
- High-quality reference genome for Clonorchis sinensis. (2021) (13)
- Gene architecture directs splicing outcome in separate nuclear spatial regions. (2022) (11)
- Chromosomal‐level genome assembly of the scimitar‐horned oryx: Insights into diversity and demography of a species extinct in the wild (2020) (11)
- Chromosome size affects sequence divergence between species through the interplay of recombination and selection (2021) (10)
- GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data (2019) (10)
- Polycomb-Mediated Chromatin Loops Revealed by a Sub-Kilobase Resolution Chromatin Interaction Map (2017) (9)
- Essential role of Cp190 in physical and regulatory boundary formation (2022) (9)
- Delineating the Tnt1 Insertion Landscape of the Model Legume Medicago truncatula cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly (2021) (8)
- Chromosome Modeling on Downsampled Hi-C Maps Enhances the Compartmentalization Signal. (2021) (7)
- Juicebox Provides a Visualization System for HiC Contact Maps with Unlimited Zoom Citation (2016) (7)
- Chromosome-level genome of Schistosoma haematobium underpins genome-wide explorations of molecular variation (2022) (7)
- RedChIP identifies noncoding RNAs associated with genomic sites occupied by Polycomb and CTCF proteins (2021) (7)
- Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement (2021) (7)
- Improved reference genome of Aedes aegypti informs arbovirus vector control (2018) (7)
- Somatic structural variant formation is guided by and influences genome architecture (2021) (6)
- Limited Evidence for Parallel Evolution Among Desert-Adapted Peromyscus Deer Mice (2020) (6)
- Genetic determinants of co-accessible chromatin regions in T cell activation across humans (2017) (6)
- Genetic determinants of chromatin accessibility and gene regulation in T cell activation across human individuals (2016) (5)
- Cohesin depleted cells pass through mitosis and reconstitute a functional nuclear architecture (2019) (5)
- Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues (2022) (4)
- The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758 (2020) (4)
- The Australian dingo is an early offshoot of modern breed dogs (2022) (4)
- A Transferable Model For Chromosome Architecture (2016) (4)
- Convergent selection on juvenile hormone signaling is associated with the evolution of eusociality in bees (2021) (3)
- A pan‐genome and chromosome‐length reference genome of narrow‐leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits (2022) (3)
- The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution (2021) (3)
- Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus) (2017) (3)
- MCPH 1 inhibits condensin II during interphase by regulating its SMC 2-kleisin 1 interface 2 3 (3)
- A chromosome-length genome assembly and annotation of blackberry (Rubus argutus, cv. “Hillquist”) (2022) (2)
- Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome (2021) (2)
- De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome (2021) (2)
- Complete vertebrate mitogenomes reveal widespread repeats and gene duplications (2021) (2)
- Nuclear Biology: What’s Been Most Surprising? (2013) (2)
- The Hi-Culfite assay reveals relationships between chromatin contacts and DNA methylation state (2018) (2)
- Cooperation among an anonymous group protected Bitcoin during failures of decentralization (2022) (2)
- A Chromosome-Length Reference Genome for the Endangered Pacific Pocket Mouse Reveals Recent Inbreeding in a Historically Large Population (2022) (2)
- The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758 (2020) (2)
- Evolution and the emergence of structure (2010) (2)
- A chromosome-level genome sequence assembly of the red raspberry (Rubus idaeus L.) (2022) (2)
- The swan genome and transcriptome, it is not all black and white (2022) (2)
- Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater (2022) (2)
- Desert Dingo (Canis lupus dingo) genome provides insights into their role in the Australian ecosystem (2020) (1)
- EndoC-βH1 multi-genomic profiling defines gene regulatory programs governing human pancreatic β cell identity and function (2018) (1)
- In silico simulations of polymer condensation: the fractal globule as a metastable state (2012) (1)
- Clean lighting leads to decreased indoor air pollution and improved respiratory health in rural Uganda (2018) (1)
- The Easter Egg Weevil (Pachyrhynchus) genome reveals synteny in Coleoptera across 200 million years of evolution (2020) (1)
- The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology. (2023) (1)
- The ENCODE Uniform Analysis Pipelines (2023) (1)
- Balanced chromosomal rearrangements offer insights into coding and noncoding genomic features associated with developmental disorders (2022) (1)
- How the genome folds (2012) (1)
- Adding Flexibility to Large-Scale Text Visualization with HathiTrust+Bookworm (2016) (1)
- Multiple evolutionary pathways to achieve thermal adaptation in small mammals (2020) (1)
- Proximity-dependent recruitment of Polycomb Repressive Complexes by the lncRNA Airn (2022) (0)
- Physiological V(D)J Recombination is Mediated by RAG Scanning of Loop-extruded Chromatin (2019) (0)
- Genetic determinants of co-accessible chromatin regions in activated T cells across humans (2018) (0)
- Big-Data Oriented Text Analysis For The Humanities: Pedagogical Use Of The HathiTrust+Bookworm Tool (2017) (0)
- Title : A Transferable Model For Chromosome Architecture (2016) (0)
- Correction to: GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data (2020) (0)
- Response to Bakker et al. (2022) (0)
- Artificial Intelligence Software for Assessing Postural Stability (2013) (0)
- Clover V3 Assembly (2017) (0)
- A 3D code in the human genome (2017) (0)
- PolyGraph: a Polymer Visualization system (2012) (0)
- A Chromosome-Length Assembly of the Hawaiian Monk Seal (Neomonachus schauinslandi): A History of “Genetic Purging” and Genomic Stability (2022) (0)
- Untangling the genome. (2019) (0)
- Three-D Codes in the Human Genome (2019) (0)
- Crispr Engineering in CD34+ Progenitors Reveals Cis-Acting Regulatory Regions Mediating 3D Interactions and Stem Cell Fate Decisions (2016) (0)
- Using Deep Learning and Google Street View to Estimate the De- mographic Makeup of the US (2017) (0)
- Correction to: GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data (2020) (0)
- Multiscale Modeling of Chromatin: Bridging Experiment with Theory (2016) (0)
- Reading and Writing Genomes in 3D: The CTCF Code (2016) (0)
- Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues. (2023) (0)
- Large DNA Methylation Canyons Anchor Chromatin Loops Maintaining Hematopoietic Stem Cell Identity (2018) (0)
- High Order Chromatin Structure Regulates Gene Expression in Hematopoietic Stem Cell Self-Renewal and Erythroid Differentiation (2016) (0)
- GE Prize essay. Zoom! (2011) (0)
- Kilobase-Level Nuclear Compartments Separate Active Regulatory Elements From Adjacent Regions (2022) (0)
- Spatial autocorrelation in fractal and knotted globules (2012) (0)
- A Chromosome-length Assembly of the Black Petaltail (Tanypteryx hageni) Dragonfly (2022) (0)
- Chromosome-length genome assembly of Teladorsagia circumcincta – a globally important helminth parasite in livestock (2023) (0)
- Chromosome-length genome assemblies and cytogenomic analyses of pangolins reveal remarkable chromosome counts and plasticity (2023) (0)
- Convergent and complementary selection shaped gains and losses of eusociality in sweat bees (2023) (0)
- A chromosome-length assembly of the Hawaiian Monk seal (Neomonarchus schauinslandi) confirms genomic stability in the Pinnipeds and a prolonged history of “genetic purging” (2022) (0)
- The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology (2023) (0)
- Title : De Novo Prediction of Human Chromosome Structure s : Epigenetic Marking Patterns Encode Genome Architecture (2017) (0)
- The genome sequence of segmental allotetraploid peanut Arachis hypogaea (2019) (0)
- Acknowledgment of Reviewers, 2017 (2017) (0)
- GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data (2020) (0)
- The fundamental role of chromatin loop extrusion in physiological V(D)J recombination (2019) (0)
- Convergent selection on hormone signaling shaped social evolution in bees (2022) (0)
- Whole genome analysis of clouded leopard species reveals an ancient divergence and distinct demographic histories (2022) (0)
- Acknowledgment to reviewers—2017 (2017) (0)
- Contact probability scaling of the Hilbert curve (2012) (0)
- Tool Juicebox Provides a Visua lization System for HiC Contact Maps with Unlimited Zoom Graphical (0)
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