Erik Winfree
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American computer scientist
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Erik Winfreecomputer-science Degrees
Computer Science
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#3641
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#1317
USA Rank
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World Rank
#5833
Historical Rank
#772
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Computer Science
Erik Winfree's Degrees
- PhD Computer Science California Institute of Technology
- Bachelors Computer Science University of Washington
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Why Is Erik Winfree Influential?
(Suggest an Edit or Addition)According to Wikipedia, Erik Winfree is an American applied computer scientist, bioengineer, and professor at California Institute of Technology. He is a leading researcher into DNA computing and DNA nanotechnology. In 1998, Winfree in collaboration with Nadrian Seeman published the creation of two-dimensional lattices of DNA tiles using the "double crossover" motif. These tile-based structures provided the capability to implement DNA computing, which was demonstrated by Winfree and Paul Rothemund in 2004, and for which they shared the 2006 Feynman Prize in Nanotechnology.
Erik Winfree's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Design and self-assembly of two-dimensional DNA crystals (1998) (2451)
- Enzyme-Free Nucleic Acid Logic Circuits (2006) (1259)
- Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades (2011) (1182)
- Control of DNA strand displacement kinetics using toehold exchange. (2009) (1051)
- Engineering Entropy-Driven Reactions and Networks Catalyzed by DNA (2007) (903)
- Neural network computation with DNA strand displacement cascades (2011) (817)
- Algorithmic Self-Assembly of DNA Sierpinski Triangles (2004) (811)
- Molecular robots guided by prescriptive landscapes (2010) (780)
- DNA as a universal substrate for chemical kinetics (2009) (669)
- Construction, analysis, ligation, and self-assembly of DNA triple crossover complexes (2000) (585)
- Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates. (2010) (564)
- Algorithmic Self-Assembly of DNA (2006) (516)
- The program-size complexity of self-assembled squares (extended abstract) (2000) (460)
- Design and characterization of programmable DNA nanotubes. (2004) (400)
- On the biophysics and kinetics of toehold-mediated DNA strand displacement (2013) (352)
- A cargo-sorting DNA robot (2017) (343)
- Thermodynamic Analysis of Interacting Nucleic Acid Strands (2007) (333)
- Synthetic in vitro transcriptional oscillators (2011) (302)
- Construction of an in vitro bistable circuit from synthetic transcriptional switches (2006) (301)
- An autonomous polymerization motor powered by DNA hybridization (2007) (300)
- A simple DNA gate motif for synthesizing large-scale circuits (2009) (278)
- Universal computation via self-assembly of DNA: Some theory and experiments (1996) (257)
- Complexity of Self-Assembled Shapes (2004) (254)
- Protein design is NP-hard. (2002) (253)
- Computation with finite stochastic chemical reaction networks (2008) (245)
- Simulations of Computing by Self-Assembly (1998) (236)
- Two computational primitives for algorithmic self-assembly: copying and counting. (2005) (235)
- An information-bearing seed for nucleating algorithmic self-assembly (2009) (230)
- Enzyme-free nucleic acid dynamical systems (2017) (223)
- Proofreading Tile Sets: Error Correction for Algorithmic Self-Assembly (2003) (220)
- Timing molecular motion and production with a synthetic transcriptional clock (2011) (211)
- On the computational power of DNA annealing and ligation (1995) (208)
- A Sticker-Based Model for DNA Computation (1998) (201)
- Toward reliable algorithmic self-assembly of DNA tiles: a fixed-width cellular automaton pattern. (2008) (200)
- Paradigms for computational nucleic acid design. (2004) (191)
- Integrating DNA strand-displacement circuitry with DNA tile self-assembly (2013) (173)
- On applying molecular computation to the data encryption standard (1999) (167)
- Synthesis of crystals with a programmable kinetic barrier to nucleation (2007) (166)
- Diverse and robust molecular algorithms using reprogrammable DNA self-assembly (2019) (162)
- Catalyzed relaxation of a metastable DNA fuel. (2006) (155)
- Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator. (2014) (150)
- Efficient Turing-Universal Computation with DNA Polymers (2010) (126)
- Programmability of Chemical Reaction Networks (2009) (124)
- Algorithmic Self-Assembly of DNA: Theoretical Motivations and 2D Assembly Experiments (2000) (117)
- Programmable Control of Nucleation for Algorithmic Self-Assembly (2004) (111)
- Self-Assembled Circuit Patterns (2003) (103)
- Robust self-replication of combinatorial information via crystal growth and scission (2012) (103)
- Active self-assembly of algorithmic shapes and patterns in polylogarithmic time (2013) (100)
- Self-healing Tile Sets (2006) (94)
- Experimental progress in computation by self-assembly of DNA tilings (1999) (93)
- Robustness and modularity properties of a non-covalent DNA catalytic reaction (2010) (91)
- Neural Network Computation by In Vitro Transcriptional Circuits (2004) (80)
- Effective design principles for leakless strand displacement systems (2018) (78)
- Complexity of Compact Proofreading for Self-assembled Patterns (2005) (69)
- Evolution as Computation (2002) (67)
- Dynamic allosteric control of noncovalent DNA catalysis reactions. (2008) (66)
- Reducing facet nucleation during algorithmic self-assembly. (2007) (64)
- DNA Computing by Self-Assembly (2003) (61)
- DNA Based Computers V (2000) (61)
- Algorithmic Bioprocesses (2009) (58)
- String Tile Models for DNA Computing by Self-Assembly (2000) (57)
- A sticker based model for DNA computation (1996) (57)
- Leakless DNA Strand Displacement Systems (2015) (54)
- Organizing centers in a cellular excitable medium (1985) (53)
- Parallel and Scalable Computation and Spatial Dynamics with DNA-Based Chemical Reaction Networks on a Surface (2014) (53)
- Whiplash PCR for O(1) Computing (1998) (50)
- Physical principles for DNA tile self-assembly. (2017) (46)
- Ensemble Bayesian analysis of bistability in a synthetic transcriptional switch. (2012) (43)
- Complexity of restricted and unrestricted models of molecular computation (1995) (43)
- Error suppression mechanisms for DNA tile self-assembly and their simulation (2009) (41)
- Stochastic Simulation of the Kinetics of Multiple Interacting Nucleic Acid Strands (2015) (40)
- A General-Purpose CRN-to-DSD Compiler with Formal Verification, Optimization, and Simulation Capabilities (2017) (34)
- Self-replication and Evolution of DNA Crystals (2005) (33)
- Bistability of an In Vitro Synthetic Autoregulatory Switch (2011) (31)
- One Dimensional Boundaries for DNA Tile Self-Assembly (2003) (31)
- Direct atomic force microscopy observation of DNA tile crystal growth at the single-molecule level. (2012) (30)
- Combining self-healing and proofreading in self-assembly (2008) (30)
- The computational power of Benenson automata (2004) (26)
- Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator (2014) (25)
- Chemical Boltzmann Machines (2017) (24)
- On the Reduction of Errors in DNA Computation (1999) (23)
- DNA Hybridization Catalysts and Catalyst Circuits (2004) (23)
- Determining hydrodynamic forces in bursting bubbles using DNA nanotube mechanics (2015) (21)
- Verifying Chemical Reaction Network Implementations: A Bisimulation Approach (2016) (21)
- A domain-level DNA strand displacement reaction enumerator allowing arbitrary non-pseudoknotted secondary structures (2015) (21)
- TileSoft: Sequence Optimization Software for Designing DNA Secondary Structures (2004) (21)
- DNA Sticky End Design and Assignment for Robust Algorithmic Self-assembly (2013) (18)
- Programming and simulating chemical reaction networks on a surface (2020) (18)
- Universal Computation and Optimal Construction in the Chemical Reaction Network-Controlled Tile Assembly Model (2015) (17)
- Two Dimensions and Two States in DNA Nanotechnology (2000) (14)
- Verifying Chemical Reaction Network Implementations: A Pathway Decomposition Approach (2014) (14)
- How crystals that sense and respond to their environments could evolve (2008) (13)
- Stable vortex rings of excitation in neuroelectric media (1988) (13)
- Automated sequence-level analysis of kinetics and thermodynamics for domain-level DNA strand-displacement systems (2018) (11)
- Error correction in DNA computing: Misclassification and strand loss (1999) (11)
- Increasing Redundancy Exponentially Reduces Error Rates during Algorithmic Self-Assembly. (2015) (10)
- Stochastic Chemical Reaction Networks for Robustly Approximating Arbitrary Probability Distributions (2018) (9)
- Inferring Parameters for an Elementary Step Model of DNA Structure Kinetics with Locally Context-Dependent Arrhenius Rates (2017) (9)
- Computational Matter (2018) (9)
- Erratum: Toward reliable algorithmic self-assembly of DNA tiles: A fixed-width cellular automaton pattern (Nano Letters (2008) 8: 10 (1791)) (2008) (8)
- Simple evolution of complex crystal species (2010) (8)
- Chemical Reaction Networks and Stochastic Local Search (2019) (8)
- Toward molecular programming with DNA (2008) (6)
- Complexity of Self-assembled Shapes ( Extended Abstract ) (6)
- Reversible Computation Using Swap Reactions on a Surface (2019) (5)
- Time Complexity of Computation and Construction in the Chemical Reaction Network-Controlled Tile Assembly Model (2016) (5)
- Error Correction for DNA Self-Assembly : Preventing Facet Nucleation (2005) (4)
- Diverse and robust molecular algorithms using reprogrammable DNA self-assembly (2019) (4)
- DNA based computers V : DIMACS Workshop DNA Based Computers V, June 14-15, 1999, Massachusetts Institute of Technology (2000) (4)
- Efficient Parameter Estimation for DNA Kinetics Modeled as Continuous-Time Markov Chains (2019) (4)
- Molecules computing: self-assembled nanostructures, molecular automata, and chemical reaction networks (2008) (3)
- Verifying polymer reaction networks using bisimulation (2020) (3)
- Supplementary material from "Automated sequence-level analysis of kinetics and thermodynamics for domain-level DNA strand-displacement systems" (2018) (2)
- Toward De Novo Recapitulation of Cytoskeleton Dynamics with DNA Nanotubes (2010) (2)
- Optimizing Tile Set Size While Preserving Proofreading with a DNA Self-assembly Compiler (2018) (2)
- Evolution as computation : DIMACS workshop, Princeton, January 1999 (2002) (2)
- The computational power ofBenenson automata (2005) (2)
- Pattern recognition in the nucleation kinetics of non-equilibrium self-assembly (2022) (1)
- Supporting Online Material Materials and Methods Som Text Figs. S1 to S6 Table S1 References Enzyme-free Nucleic Acid Logic Circuits (1)
- Detailed Balanced Chemical Reaction Networks as Generalized Boltzmann Machines (2022) (1)
- Efficient Turing-universal computation with DNA polymers ( extended abstract ) (2010) (1)
- Correction to "Design and Characterization of Programmable DNA Nanotubes" (2013) (1)
- Erratum to "The computational power of Benenson automata" [Theoret. Comput. Sci. 344 (2005) 279-297] (2011) (1)
- Two-dimensional tile displacement can simulate cellular automata (2023) (1)
- Research Note - Biochemical Logic: Submerged Circuits of Floating DNA (2007) (1)
- Whiplash Pcr for O1 Computing (1998) (1)
- Single-Molecule Tracking of Nanorobots on Pseudo-One-Dimensional DNA Origami Tracks (2010) (0)
- Lulu Qian Displacement Cascades Scaling Up Digital Circuit Computation with DNA Strand (2012) (0)
- The Computer Science of Molecular Programming (2011) (0)
- Predicting DNA kinetics with a truncated continuous-time Markov chain method. (2023) (0)
- Self-assembly of Carbon Nanotube Based Devices on Programmable DNA Crystals (2008) (0)
- The Tall Thin Molecular Programmer (2023) (0)
- Wood. In vitro selection for a Max 1s DNA genetic algorithm. In David Gifford and Erik (0)
- Material for Enzyme-Free Nucleic Acid Logic Circuits (2006) (0)
- The pathway elaboration method for mean first passage time estimation in large continuous-time Markov chains with applications to nucleic acid kinetics (2021) (0)
- Author Correction: Diverse and robust molecular algorithms using reprogrammable DNA self-assembly (2019) (0)
- Erik Winfree is an assistant profes- sor in computer science and com- (2004) (0)
- PNAS Plus Significance Statements (2015) (0)
- Programming a DNA World (2007) (0)
- A Sticker Based Mod el for DNA Comp utation (0)
- Driving DNA Tweezers with an in vitro Transcriptional Oscillator (2010) (0)
- Biomolecular Computing by In Vitro Transcriptional Networks (2004) (0)
- Design and Characterization of Programmable DNA Nanotubes Correction to Supporting Information (2013) (0)
- Joint DAC/IWBDA special session design and synthesis of biological circuits (2011) (0)
- and kinetics of DNA nanotube polymerization from single-fi lament measurements † (2015) (0)
- Proceedings Machines, Computations and Universality 2013: Ludicrously fast universal computation and construction with reconfigurable molecular robots (2013) (0)
- Molecular Programming with DNA (2009) (0)
- Design and Characterization of Programmable DNA Nanotubes Supporting Information (2004) (0)
- DNA Based Nanomechanical Devices 1 NSF (2002) (0)
- Enzyme Free DNA Amplification (2008) (0)
- Fault-Tolerance in Biochemical Systems (2006) (0)
- Simple evolution of complex crystal species (2012) (0)
- CamSURF Progress Report (2008) (0)
- In-vitro Transcriptional Circuits (2000) (0)
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What Schools Are Affiliated With Erik Winfree?
Erik Winfree is affiliated with the following schools:
