Eugene Wimberly Myers
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Eugene Wimberly Myersbiology Degrees
Biology
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#4955
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Bioinformatics
#30
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#30
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Computational Biology
#31
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#31
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Biology
Eugene Wimberly Myers's Degrees
- PhD Biochemistry University of California, Berkeley
- Bachelors Chemistry University of California, Berkeley
Why Is Eugene Wimberly Myers Influential?
(Suggest an Edit or Addition)Eugene Wimberly Myers's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Basic local alignment search tool. (1990) (83318)
- Genome sequencing in microfabricated high-density picolitre reactors (2005) (7808)
- The Sequence of the Human Genome (2001) (6572)
- The genome sequence of Drosophila melanogaster. (2000) (6125)
- Suffix arrays: a new method for on-line string searches (1993) (2410)
- Basic local alignment search tool. Journal of Molecular Biology (1990) (2131)
- The Genome Sequence of the Malaria Mosquito Anopheles gambiae (2002) (2020)
- A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation (2015) (1752)
- The whole genome assembly of Drosophila (2000) (1617)
- Recent Segmental Duplications in the Human Genome (2002) (1350)
- Optimal alignments in linear space (1988) (1268)
- A GAL4-driver line resource for Drosophila neurobiology. (2012) (1127)
- Content-aware image restoration: pushing the limits of fluorescence microscopy (2018) (639)
- Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans (2007) (635)
- The complete sequence of a human genome (2021) (622)
- Towards complete and error-free genome assemblies of all vertebrate species (2020) (557)
- Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencing (2007) (525)
- PILER: identification and classification of genomic repeats (2005) (515)
- A fast bit-vector algorithm for approximate string matching based on dynamic programming (1998) (494)
- Cell Detection with Star-convex Polygons (2018) (450)
- The fragment assembly string graph (2005) (430)
- Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence (2002) (426)
- A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome (2002) (389)
- Human whole-genome shotgun sequencing. (1997) (321)
- A platform for brain-wide imaging and reconstruction of individual neurons (2015) (312)
- AnO(ND) difference algorithm and its variations (1986) (292)
- Vibrissa-Based Object Localization in Head-Fixed Mice (2010) (284)
- Toward Simplifying and Accurately Formulating Fragment Assembly (1995) (264)
- Author Correction: The axolotl genome and the evolution of key tissue formation regulators (2018) (263)
- Heterochromatic sequences in a Drosophila whole-genome shotgun assembly (2002) (260)
- Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data (2014) (260)
- mGRASP enables mapping mammalian synaptic connectivity with light microscopy (2011) (224)
- A precise inter-procedural data flow algorithm (1981) (216)
- A file comparison program (1985) (211)
- Efficient Bayesian-based multiview deconvolution (2013) (210)
- Combinatorial algorithms for DNA sequence assembly (1995) (210)
- Whole-genome shotgun assembly and comparison of human genome assemblies (2004) (195)
- Computability of Models for Sequence Assembly (2007) (187)
- A 3D Digital Atlas of C. elegans and Its Application To Single-Cell Analyses (2009) (185)
- Finding All Spanning Trees of Directed and Undirected Graphs (1978) (182)
- Limiting Amounts of Centrosome Material Set Centrosome Size in C. elegans Embryos (2011) (181)
- Incremental String Comparison (1998) (181)
- Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms (2016) (181)
- Sequence comparison with concave weighting functions. (1988) (175)
- Star-convex Polyhedra for 3D Object Detection and Segmentation in Microscopy (2019) (174)
- Approximate matching of regular expressions. (1989) (163)
- Efficient Local Alignment Discovery amongst Noisy Long Reads (2014) (160)
- BrainAligner: 3D Registration Atlases of Drosophila Brains (2011) (148)
- Automatic 3D neuron tracing using all-path pruning (2011) (142)
- A Four Russians algorithm for regular expression pattern matching (1992) (140)
- Automated Tracking of Whiskers in Videos of Head Fixed Rodents (2012) (135)
- Six reference-quality genomes reveal evolution of bat adaptations (2020) (133)
- Analysis of Cell Fate from Single-Cell Gene Expression Profiles in C. elegans (2009) (132)
- ClearVolume: open-source live 3D visualization for light-sheet microscopy (2015) (132)
- An O(NP) Sequence Comparison Algorithm (1990) (129)
- A sublinear algorithm for approximate keyword searching (1994) (129)
- The genome of S. mediterranea and the evolution of cellular core mechanisms (2018) (124)
- Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for All Living Bat Species. (2018) (122)
- Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length (2005) (121)
- Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models (2011) (117)
- The Mechanical Variables Underlying Object Localization along the Axis of the Whisker (2013) (115)
- Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis (2014) (110)
- Analyzing and compressing assembly code (1984) (106)
- The greedy path-merging algorithm for contig scaffolding (2002) (98)
- Contrasting signatures of genomic divergence during sympatric speciation (2020) (89)
- Improved repeat identification and masking in Dipterans. (2007) (88)
- A tunable refractive index matching medium for live imaging cells, tissues and model organisms (2017) (83)
- Differential lateral and basal tension drive folding of Drosophila wing discs through two distinct mechanisms (2018) (79)
- Whole-genome DNA sequencing (1999) (76)
- CLIJ: GPU-accelerated image processing for everyone (2019) (76)
- Cell dynamics underlying oriented growth of the Drosophila wing imaginal disc (2017) (74)
- Efficient q-Gram Filters for Finding All-Matches Over a Given Length (2005) (73)
- ReAligner: a program for refining DNA sequence multi-alignments (1997) (73)
- Automatic image analysis for gene expression patterns of fly embryos (2007) (72)
- Thalamocortical input onto layer 5 pyramidal neurons measured using quantitative large-scale array tomography (2013) (67)
- Isotropic reconstruction of 3D fluorescence microscopy images using convolutional neural networks (2017) (67)
- A Dataset Generator for Whole Genome Shotgun Sequencing (1999) (66)
- Straightening Caenorhabditis elegans images (2007) (64)
- The Balance of Prickle/Spiny-Legs Isoforms Controls the Amount of Coupling between Core and Fat PCP Systems (2014) (63)
- Design of a compartmentalized shotgun assembler for the human genome (2001) (63)
- Efficient applicative data types (1984) (63)
- The Earth BioGenome Project 2020: Starting the clock (2022) (58)
- On the sequencing and assembly of the human genome (2002) (56)
- Chaining multiple-alignment fragments in sub-quadratic time (1995) (56)
- A subquadratic algorithm for approximate limited expression matching (2005) (55)
- Comparing in situ mRNA expression patterns of drosophila embryos (2004) (55)
- Fast and robust optical flow for time-lapse microscopy using super-voxels (2012) (55)
- Towards Interpretable Semantic Segmentation via Gradient-weighted Class Activation Mapping (2020) (54)
- Progressive multiple alignment with constraints (1997) (53)
- BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies (2015) (53)
- Corrigendum: Genome sequencing in microfabricated high-density picolitre reactors (2006) (52)
- Proof-editing is the Bottleneck Of 3D Neuron Reconstruction: The Problem and Solutions (2011) (51)
- Y Chromosome and Other Heterochromatic Sequences of the Drosophila Melanogaster Genome: How Far can we go? (2003) (51)
- A Subquadratic Algorithm for Approximate Regular Expression Matching (1995) (50)
- The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms (2018) (49)
- Identifying Satellites and Periodic Repetitions in Biological Sequences (1998) (49)
- Approximate matching of regular expressions (1989) (43)
- Approximately Matching Context-Free Languages (1995) (42)
- An editor for revision control (1987) (41)
- Complete vertebrate mitogenomes reveal widespread repeats and gene duplications (2021) (41)
- AUTOMATIC SEGMENTATION OF NUCLEI IN 3D MICROSCOPY IMAGES OF C.ELEGANS (2007) (39)
- Nuclear accessibility of β-actin mRNA is measured by 3D single-molecule real-time tracking (2015) (39)
- An Algorithm for Locating Nonoverlapping Regions of Maximum Alignment Score (1996) (37)
- EASI-FISH for thick tissue defines lateral hypothalamus spatio-molecular organization (2021) (36)
- Approximate Matching of Network Expressions with Spacers (1992) (36)
- An Algorithm for Locating Non-Overlapping Regions of Maximum Alignment Score (1993) (35)
- Active Graph Matching for Automatic Joint Segmentation and Annotation of C. elegans (2014) (33)
- Relating Cascaded Random Forests to Deep Convolutional Neural Networks for Semantic Segmentation (2015) (33)
- Optimal Joint Segmentation and Tracking of Escherichia Coli in the Mother Machine (2014) (33)
- An Applicative Random-Access Stack (1983) (32)
- Atlas-builder software and the eNeuro atlas: resources for developmental biology and neuroscience (2014) (32)
- Simultaneous recognition and segmentation of cells: application in C.elegans (2011) (32)
- Anisotropic path searching for automatic neuron reconstruction (2011) (32)
- Automated tracking and analysis of centrosomes in early Caenorhabditis elegans embryos (2010) (31)
- Two algorithms for LCS Consecutive Suffix Alignment (2004) (31)
- Non Hybrid Long Read Consensus Using Local De Bruijn Graph Assembly (2017) (31)
- Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos (2016) (30)
- VANO: a volume-object image annotation system (2009) (30)
- A history of DNA sequence assembly (2016) (30)
- Alignment Metric Accuracy (2005) (30)
- The independence of our genome assemblies (2003) (28)
- Identifying satellites in nucleic acid sequences (1998) (28)
- Algorithms for computing and integrating physical maps using unique probes (1997) (28)
- Comparing Assemblies Using Fragments and Mate-Pairs (2001) (27)
- The greedy path-merging algorithm for sequence assembly (2001) (26)
- Error Tolerant Indexing and Alignment of Short Reads with Covering Template Families (2010) (25)
- Clustering gene expression patterns of fly embryos (2006) (25)
- PreMosa: extracting 2D surfaces from 3D microscopy mosaics (2017) (25)
- Six new reference-quality bat genomes illuminate the molecular basis and evolution of bat adaptations (2019) (24)
- Automatic Neuron Tracing in Volumetric Microscopy Images with Anisotropic Path Searching (2010) (24)
- An Overview of Sequence Comparison Algorithms in Molecular Biology (2004) (23)
- Row replacement algorithms for screen editors (1989) (23)
- Reporting Exact and Approximate Regular Expression Matches (1998) (22)
- Estimating the Probability of Approximate Matches (1997) (21)
- Automatic Recognition of Cells (ARC) for 3D Images of C. elegans (2008) (20)
- A motif-based framework for recognizing sequence families (2005) (20)
- Practical sensorless aberration estimation for 3D microscopy with deep learning (2020) (20)
- Large‐scale genome sampling reveals unique immunity and metabolic adaptations in bats (2021) (20)
- Xlandscape: the graphical display of word frequencies in sequences (1998) (19)
- Biobeam—Multiplexed wave-optical simulations of light-sheet microscopy (2017) (19)
- An O (N2 log N) restriction map comparison and search algorithm. (1992) (18)
- Interpreting anonymous DNA samples from mass disasters - probabilistic forensic inference using genetic markers (2006) (18)
- Algorithms for whole genome shotgun sequencing (1999) (18)
- Uncertainty-Driven Forest Predictors for Vertebra Localization and Segmentation (2015) (17)
- Rod nuclear architecture determines contrast transmission of the retina and behavioral sensitivity in mice (2019) (15)
- ALGORITHMIC ADVANCES FOR SEARCHING BIOSEQUENCE DATABASES (1994) (15)
- Approximate regular expression pattern matching with concave gap penalties (1992) (15)
- Dynamic Polarization of the Multiciliated Planarian Epidermis between Body Plan Landmarks. (2019) (15)
- Unsupervised segmentation of noisy electron microscopy images using salient watersheds and region merging (2013) (15)
- Mapping Stacked Decision Forests to Deep and Sparse Convolutional Neural Networks for Semantic Segmentation (2015) (14)
- An O(E log E + I) Expected Time Algorithm for the Planar Segment Intersection Problem (1985) (14)
- Moral Lineage Tracing (2015) (13)
- A Table-Driven, Full-Sensitivity Similarity Search Algorithm (2003) (13)
- The genome reconstruction manager: a software environment for supporting high-throughput DNA sequencing. (1994) (12)
- Merfin: improved variant filtering and polishing via k-mer validation (2021) (12)
- Computer program for the IBM personal computer which searches for approximate matches to short oligonucleotide sequences in long target DNA sequences (1986) (12)
- 3D Neuron Tip Detection in Volumetric Microscopy Images (2011) (12)
- Mapping Auto-context Decision Forests to Deep ConvNets for Semantic Segmentation (2015) (12)
- Crowd sourcing image segmentation with iaSTAPLE (2017) (11)
- Rapid and ongoing evolution of repetitive sequence structures in human centromeres (2020) (11)
- A Precise and Efficient Algorithm for Determining Existential Summary Data Flow Information (1980) (11)
- Interactive design of GPU-accelerated Image Data Flow Graphs and cross-platform deployment using multi-lingual code generation (2020) (11)
- A software tool for finding locally optimal alignments in protein and nucleic acid sequences (1988) (10)
- Efficient Algorithms for Moral Lineage Tracing (2017) (10)
- Super-pattern matching (1995) (10)
- CHAPTER THIRTY-TWO – Advances in Sequence Assembly (1994) (10)
- D-CRACKING: PAVEMENT DESIGN AND CONSTRUCTION VARIABLES (1982) (10)
- Is Whole Human Genome Sequencing Feasible (1997) (9)
- Seamless HPC Integration of Data-Intensive KNIME Workflows via UNICORE (2016) (9)
- Supplemental information PreMosa : Extracting 2 D surfaces from 3 D microscopy mosaics (2017) (9)
- Corrigendum: Genome sequencing in microfabricated high-density picolitre reactors (2006) (8)
- An Interface for a Fragment Assembly Kernel (1996) (8)
- Interactions of cosmic strings. (1988) (7)
- Segmentation of center brains and optic lobes in 3D confocal images of adult fruit fly brains. (2010) (7)
- Complete vertebrate mitogenomes reveal widespread gene duplications and repeats (2020) (7)
- What's Behind Blast (2013) (6)
- Voices in methods development (2019) (6)
- Expansion-Assisted Iterative-FISH defines lateral hypothalamus spatio-molecular organization (2021) (5)
- Contextual grouping in a concept : a multistage decision strategy for EM segmentation (2012) (5)
- Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories (2022) (4)
- Next Generation Sequencing (Dagstuhl Seminar 16351) (2016) (4)
- A Note on Scoring Clones Given a Probe Ordering (1995) (4)
- A simple row‐replacement method (1988) (4)
- Bidirectional neuronal migration coordinates retinal morphogenesis by preventing spatial competition (2021) (4)
- Proceedings of the 7th Annual Symposium on Combinatorial Pattern Matching (1996) (4)
- Investigating Neural Circuitry Using a Compartment-Level Connectivity Map of the Adult Drosophila Brain (2010) (3)
- Side‐effects in Automatic File Updating (1986) (3)
- BIGMAC II: A FORTRAN language augmentation tool (1981) (3)
- Efficient bayesian multi-view deconvolution (2013) (3)
- Guest Editor's Foreword: Special Issue on Computational Molecular Biology. (1995) (3)
- AnO(N2 logN) restriction map comparison and search algorithm (1992) (2)
- Author response: A tunable refractive index matching medium for live imaging cells, tissues and model organisms (2017) (2)
- Bridging scales in scattering tissues via multifocal two-photon microscopy (2020) (2)
- Invited Lecture - Accelerating Smith-Waterman Searches (2002) (2)
- A preliminary comparison of the mouse and human genomes (2002) (2)
- Unsupervised segmentation of noisy electron microscopy images using salient watersheds and region merging (2013) (1)
- CLIJ: Enabling GPU-accelerated image processing in Fiji (2019) (1)
- Sequence comparison with concave weighting functions (1988) (1)
- Special RECOMB 2002 Issue (2003) (1)
- Multi-scale coordination of planar cell polarity in planarians (2018) (1)
- Recognizing genes and other components of genomic structure (1991) (1)
- STRAIGHTENING WORM IMAGES (2007) (1)
- Annual Review of Animal Biosciences Bat Biology , Genomes , and the Bat 1 K Project : To Generate Chromosome-Level Genomes for All Living Bat Species (2018) (1)
- Constructing 5D developing gene expression patterns without live animal imaging (2014) (1)
- Finding long tandem repeats in long noisy reads (2020) (1)
- Archeological Evidence of Parasitic Infection from the 19th Century Company Town of Fayette, Michigan (2000) (1)
- Supplementary document for Practical sensorless aberration estimation for 3D microscopy with deep learning - 4780517.pdf (2020) (0)
- IMPROVING THE RUNNING TIMES FOR SOME STRING-MATCHING PROBLEMS (2013) (0)
- Constructing 5D developing gene expression patterns without live animal imaging (2014) (0)
- RECONSTRUCTION OF MULTIFOCAL MICROSCOPY DATA (2014) (0)
- Imaging-Based Systems Biology (2006) (0)
- Identifying features in biological sequences: Sixth workshop report (1995) (0)
- Parallelizing and Analyzing the Behavior of Sequence Alignment Algorithm on a Cluster of Workstations for Large Datasets (2015) (0)
- Data Mining Straightening C . elegans Images (2007) (0)
- Estimation of Optical Aberrations in 3D Microscopic Bioimages (2022) (0)
- A Sublinear Algorithm for Approximate Keyword Searching 1 (2003) (0)
- A Whole Genome Assembler for Drosophila (1999) (0)
- Merging Sorted Lists of Similar Strings (2022) (0)
- The Assembly of the Human and Mouse Genomes (2002) (0)
- ISMB 2003 - Editorial (2003) (0)
- BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies (2015) (0)
- Advances in DNA sequencing (2003) (0)
- Discrete Methods for Image Analysis Applied to Molecular Biology (2013) (0)
- Accurate k-mer Classification Using Read Profiles (2022) (0)
- On bioimage informatics and decoding genomes (2012) (0)
- Invited Talk: Imaging-Based Systems Biology (2006) (0)
- Comparing sequence scaffolds (2001) (0)
- FLAT: A FORTRAN Language Augmentation Tool, (1980) (0)
- Xlandscape: a Tool for the Graphical Display of Word Frequencies in Sequences (1997) (0)
- APBC 2010. The Eighth Asia Pacific Bioinformatics Conference Bangalore, India, 18-21 January 2010 (2010) (0)
- Fast and accurate aberration estimation from 3D bead images using convolutional neural networks (2020) (0)
- Genome Recent Segmental Duplications in the Human (2008) (0)
- Progress toward the whole-genome shotgun sequencing of Drosophila (abstract) (1999) (0)
- Touch Distance of Contact During Active Vibrissal Responses of Trigeminal Ganglion Neurons to the (2006) (0)
- Whole genome sequencing, comparative genomics, and systems biology (2004) (0)
- Biobeam – Rigorous wave-optical simulations of light- sheet microscopy (2017) (0)
- Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos (2016) (0)
- Application of the Megaruptor® for shearing of ultra-long DNA fragments in the context of Long Read Sequencing using 3rd Gen Sequencing Technologies (2016) (0)
- BIGMAC II: A FORTRAN Languages Augmentation Tool ; CU-CS-179-80 (1980) (0)
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What Schools Are Affiliated With Eugene Wimberly Myers?
Eugene Wimberly Myers is affiliated with the following schools:
