Eytan Ruppin
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Computer Science
Eytan Ruppin's Degrees
- PhD Computer Science Tel Aviv University
- Masters Computer Science Tel Aviv University
- Bachelors Computer Science Tel Aviv University
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(Suggest an Edit or Addition)Eytan Ruppin's Published Works
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Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Placing search in context: the concept revisited (2002) (1809)
- Associating Genes and Protein Complexes with Disease via Network Propagation (2010) (770)
- Network-based prediction of human tissue-specific metabolism (2008) (652)
- PREDICT: a method for inferring novel drug indications with application to personalized medicine (2011) (595)
- Translation efficiency is determined by both codon bias and folding energy (2010) (515)
- Regulatory on/off minimization of metabolic flux changes after genetic perturbations. (2005) (466)
- Actor-critic models of the basal ganglia: new anatomical and computational perspectives (2002) (461)
- Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase (2011) (437)
- Discovery of SARS-CoV-2 Antivirals through Large-scale Drug Repositioning (2020) (422)
- Competitive and cooperative metabolic interactions in bacterial communities. (2011) (395)
- Glutamine Synthetase activity fuels nucleotide biosynthesis and supports growth of glutamine-restricted glioblastoma (2015) (387)
- Computational reconstruction of tissue-specific metabolic models: application to human liver metabolism (2010) (379)
- Robust prediction of response to immune checkpoint blockade therapy in metastatic melanoma (2018) (356)
- The use of aspirin to prevent pregnancy‐induced hypertension and lower the ratio of thromboxane A2 to prostacyclin in relatively high risk pregnancies (1989) (350)
- Unsupervised learning of natural languages (2009) (324)
- Predicting selective drug targets in cancer through metabolic networks (2011) (278)
- iMAT: an integrative metabolic analysis tool (2010) (257)
- Diversion of aspartate in ASS1-deficient tumors fosters de novo pyrimidine synthesis (2015) (250)
- A genome-scale computational study of the interplay between transcriptional regulation and metabolism (2007) (250)
- Facial Attractiveness: Beauty and the Machine (2006) (247)
- Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model (2010) (246)
- The large-scale organization of the bacterial network of ecological co-occurrence interactions (2010) (236)
- Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity (2011) (234)
- Medical sequencing at the extremes of human body mass. (2006) (228)
- Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect (2011) (225)
- Predicting Cancer-Specific Vulnerability via Data-Driven Detection of Synthetic Lethality (2014) (224)
- Placing search in context: the concept revisited (2001) (223)
- Large-scale reconstruction and phylogenetic analysis of metabolic environments (2008) (216)
- Systems analysis of intracellular pH vulnerabilities for cancer therapy (2018) (209)
- UVB-Induced Tumor Heterogeneity Diminishes Immune Response in Melanoma (2019) (209)
- Multiple knockout analysis of genetic robustness in the yeast metabolic network (2006) (208)
- The evolution of modularity in bacterial metabolic networks (2008) (205)
- Fumarate induces redox-dependent senescence by modifying glutathione metabolism (2015) (204)
- Composite effects of gene determinants on the translation speed and density of ribosomes (2011) (198)
- Discovery of SARS-CoV-2 antiviral drugs through large-scale compound repurposing (2020) (184)
- QPath: a method for querying pathways in a protein-protein interaction network (2006) (181)
- INDI: a computational framework for inferring drug interactions and their associated recommendations (2012) (180)
- Evolution of Reinforcement Learning in Uncertain Environments: A Simple Explanation for Complex Foraging Behaviors (2002) (179)
- Genome-Scale Analysis of Translation Elongation with a Ribosome Flow Model (2011) (174)
- Combining Drug and Gene Similarity Measures for Drug-Target Elucidation (2011) (169)
- Predicting metabolic biomarkers of human inborn errors of metabolism (2009) (166)
- Neuronal Regulation: A Mechanism for Synaptic Pruning During Brain Maturation (1999) (161)
- QNet: A Tool for Querying Protein Interaction Networks (2007) (159)
- Synaptic Pruning in Development: A Computational Account (1998) (158)
- Modeling cancer metabolism on a genome scale (2015) (155)
- Enhancing the Prioritization of Disease-Causing Genes through Tissue Specific Protein Interaction Networks (2012) (151)
- Urea Cycle Dysregulation Generates Clinically Relevant Genomic and Biochemical Signatures (2018) (147)
- A Neural Model of Memory Impairment in Diffuse Cerebral Atrophy (1995) (138)
- A direct comparison of protein interaction confidence assignment schemes (2006) (137)
- Multiomics Prediction of Response Rates to Therapies to Inhibit Programmed Cell Death 1 and Programmed Cell Death 1 Ligand 1. (2019) (134)
- A Platform of Synthetic Lethal Gene Interaction Networks Reveals that the GNAQ Uveal Melanoma Oncogene Controls the Hippo Pathway through FAK. (2019) (133)
- Metabolic associations of reduced proliferation and oxidative stress in advanced breast cancer. (2012) (132)
- Pepitope: epitope mapping from affinity-selected peptides (2007) (127)
- Determinants of Protein Abundance and Translation Efficiency in S. cerevisiae (2007) (127)
- Predicting selective drug targets in cancer through metabolic networks (2011) (126)
- Phenotype-based cell-specific metabolic modeling reveals metabolic liabilities of cancer (2014) (117)
- SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments (2007) (117)
- Evolutionary autonomous agents: A neuroscience perspective (2002) (117)
- Fair Attribution of Functional Contribution in Artificial and Biological Networks (2004) (116)
- Feature Selection Based on the Shapley Value (2005) (114)
- Precision Oncology: The Road Ahead. (2017) (113)
- Identification of bacteria-derived HLA-bound peptides in melanoma (2021) (112)
- Distributed synchrony in a cell assembly of spiking neurons (2001) (111)
- Integrative Genomic Analysis Identifies Isoleucine and CodY as Regulators of Listeria monocytogenes Virulence (2012) (107)
- Epitope mapping using combinatorial phage-display libraries: a graph-based algorithm (2006) (106)
- Harnessing the landscape of microbial culture media to predict new organism–media pairings (2015) (106)
- A computational study of the Warburg effect identifies metabolic targets inhibiting cancer migration (2014) (105)
- Toward accurate reconstruction of functional protein networks (2009) (105)
- Feature Selection via Coalitional Game Theory (2007) (105)
- Network-level architecture and the evolutionary potential of underground metabolism (2014) (103)
- Association between translation efficiency and horizontal gene transfer within microbial communities (2011) (98)
- Predicting Drug Targets and Biomarkers of Cancer via Genome-Scale Metabolic Modeling (2012) (97)
- A Humanlike Predictor of Facial Attractiveness (2006) (93)
- Metabolic-network-driven analysis of bacterial ecological strategies (2009) (92)
- Structural robustness of metabolic networks with respect to multiple knockouts. (2008) (92)
- Environmental Stresses Disrupt Telomere Length Homeostasis (2013) (91)
- Genome-scale study reveals reduced metabolic adaptability in patients with non-alcoholic fatty liver disease (2016) (91)
- ANAT: A Tool for Constructing and Analyzing Functional Protein Networks (2011) (90)
- Common and specific signatures of gene expression and protein–protein interactions in autoimmune diseases (2012) (88)
- Predicting selective drug targets in cancer through metabolic networks (2011) (87)
- Metabolic reconstruction, constraint-based analysis and game theory to probe genome-scale metabolic networks. (2010) (87)
- Model-based identification of drug targets that revert disrupted metabolism and its application to ageing (2013) (86)
- Harnessing synthetic lethality to predict the response to cancer treatment (2018) (86)
- A genome-wide screen for essential yeast genes that affect telomere length maintenance (2009) (86)
- Gut microbiota dependent anti-tumor immunity restricts melanoma growth in Rnf5−/− mice (2019) (85)
- Direct evolution of genetic robustness in microRNA. (2006) (85)
- Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly (2018) (84)
- Systematic identification of gene annotation errors in the widely used yeast mutation collections (2012) (81)
- Large-scale study of antibody titer decay following BNT162b2 mRNA vaccine or SARS-CoV-2 infection (2021) (78)
- Proteomics-Based Metabolic Modeling Reveals That Fatty Acid Oxidation (FAO) Controls Endothelial Cell (EC) Permeability* (2015) (77)
- Targeting the Warburg effect via LDHA inhibition engages ATF4 signaling for cancer cell survival (2018) (77)
- A computational study of the Warburg effect identifies metabolic targets inhibiting cancer migration (2014) (76)
- The effect of phenotypic plasticity on evolution in multipeaked fitness landscapes (2006) (75)
- System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis. (2016) (74)
- A method for inferring medical diagnoses from patient similarities (2013) (73)
- Mitochondrial Regulation of the Hippocampal Firing Rate Set Point and Seizure Susceptibility (2019) (72)
- Immunoproteasome expression is associated with better prognosis and response to checkpoint therapies in melanoma (2020) (72)
- Translation efficiency in humans: tissue specificity, global optimization and differences between developmental stages (2010) (71)
- Metabolic Network Prediction of Drug Side Effects. (2016) (71)
- Amphiphilic nanocarrier-induced modulation of PLK1 and miR-34a leads to improved therapeutic response in pancreatic cancer (2018) (69)
- p53 promotes the expression of gluconeogenesis-related genes and enhances hepatic glucose production (2013) (68)
- 24 Combined analysis of antigen presentation and T cell recognition reveals restricted immune responses in melanoma (2018) (68)
- Neural Network Modeling of Memory Deterioration in Alzheimer's Disease (1993) (67)
- Elapsed time since BNT162b2 vaccine and risk of SARS-CoV-2 infection: test negative design study (2021) (65)
- Elapsed time since BNT162b2 vaccine and risk of SARS-CoV-2 infection in a large cohort (2021) (65)
- Integrated proteotranscriptomics of breast cancer reveals globally increased protein-mRNA concordance associated with subtypes and survival (2018) (63)
- Memory Maintenance via Neuronal Regulation (1998) (61)
- A systems-level approach to mapping the telomere length maintenance gene circuitry (2008) (60)
- Co-evolving architectures for cellular machines (1997) (60)
- Co-targeting the tumor endothelium and P-selectin-expressing glioblastoma cells leads to a remarkable therapeutic outcome (2017) (59)
- A machine learning predictor of facial attractiveness revealing human-like psychophysical biases (2008) (59)
- Gene Expression of Caenorhabditis elegans Neurons Carries Information on Their Synaptic Connectivity (2006) (58)
- Reconstructing ancestral gene content by coevolution. (2010) (57)
- Gene Expression in the Rodent Brain is Associated with Its Regional Connectivity (2011) (55)
- Neuronal-Based Synaptic Compensation: A Computational Study in Alzheimer's Disease (1996) (55)
- Spreading Depression in Focal Ischemia: A Computational Study (1998) (54)
- Properties of untranslated regions of the S. cerevisiae genome (2009) (52)
- A computational model of acute focal cortical lesions. (1997) (51)
- Integrating Transcriptomics with Metabolic Modeling Predicts Biomarkers and Drug Targets for Alzheimer's Disease (2014) (51)
- Neural Modeling of Brain and Cognitive Disorders (1996) (50)
- A systems level strategy for analyzing the cell death network: implication in exploring the apoptosis/autophagy connection (2010) (49)
- Translational Reprogramming Marks Adaptation to Asparagine Restriction in Cancer (2019) (49)
- Selection for Translation Efficiency on Synonymous Polymorphisms in Recent Human Evolution (2011) (49)
- Network-based prediction of metabolic enzymes' subcellular localization (2009) (49)
- Can single knockouts accurately single out gene functions? (2008) (49)
- Localization of Function via Lesion Analysis (2003) (48)
- Pathogenesis of schizophrenic delusions and hallucinations: a neural model. (1996) (48)
- Tumor methionine metabolism drives T-cell exhaustion in hepatocellular carcinoma (2021) (47)
- Large-Scale Study of Antibody Titer Decay following BNT162b2 mRNA Vaccine or SARS-CoV-2 Infection (2021) (47)
- Synthetic dosage lethality in the human metabolic network is highly predictive of tumor growth and cancer patient survival (2015) (46)
- Improved evidence-based genome-scale metabolic models for maize leaf, embryo, and endosperm (2015) (45)
- The evolution of imitation and mirror neurons in adaptive agents (2005) (45)
- Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States (2006) (45)
- Axiomatic Scalable Neurocontroller Analysis via the Shapley Value (2006) (44)
- Emergence of Memory-Driven Command Neurons in Evolved Artificial Agents (2001) (43)
- The tumour microenvironment shapes innate lymphoid cells in patients with hepatocellular carcinoma (2021) (43)
- Automatic Acquisition and Efficient Representation of Syntactic Structures (2002) (43)
- Evolutionary conservation and over-representation of functionally enriched network patterns in the yeast regulatory network (2007) (43)
- PRINCIPLE: a tool for associating genes with diseases via network propagation (2011) (42)
- Synthetic lethal combination targeting BET uncovered intrinsic susceptibility of TNBC to ferroptosis (2020) (42)
- Meta-analysis of gene expression data: a predictor-based approach (2007) (41)
- Examining the volume efficiency of the cortical architecture in a multi-processor network model (1993) (41)
- Flux balance analysis accounting for metabolite dilution (2010) (40)
- Enhancing Autonomous Agents Evolution with Learning by Imitation (2003) (39)
- Glycan Degradation (GlyDeR) Analysis Predicts Mammalian Gut Microbiota Abundance and Host Diet-Specific Adaptations (2014) (39)
- Disorders of Brain, Behavior, and Cognition: The Neurocomputational Perspective (1999) (39)
- Metabolically re-modeling the drug pipeline. (2013) (38)
- An integrated computational and experimental study uncovers FUT9 as a metabolic driver of colorectal cancer (2017) (38)
- Large-Scale Elucidation of Drug Response Pathways in Humans (2012) (37)
- Increased MicroRNA Activity in Human Cancers (2009) (37)
- Evolution of delayed resistance to immunotherapy in a melanoma responder (2021) (37)
- Diet‐induced changes of redox potential underlie compositional shifts in the rumen archaeal community (2017) (36)
- Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species (2010) (36)
- A joint analysis of transcriptomic and metabolomic data uncovers enhanced enzyme-metabolite coupling in breast cancer (2016) (36)
- Quantitative Analysis of Genetic and Neuronal Multi-Perturbation Experiments (2005) (35)
- Compensatory Mechanisms in an Attractor Neural Network Model of Schizophrenia (1995) (35)
- Motif extraction and protein classification (2005) (35)
- Characterization of HLH-Like Manifestations as a CRS Variant in Patients Receiving CD22 CAR T-Cells. (2021) (35)
- Metabolic modeling of endosymbiont genome reduction on a temporal scale (2011) (35)
- Evolutionary rate and gene expression across different brain regions (2008) (34)
- Transcriptional Regulation by CHIP/LDB Complexes (2010) (34)
- Synthetic lethality-mediated precision oncology via the tumor transcriptome (2021) (34)
- A complex-centric view of protein network evolution (2009) (34)
- A neural model of the dynamic activation of memory (1993) (33)
- Systematic Investigation of Cytokine Signaling Activity at the Tissue and Single-Cell Level (2021) (32)
- In vitro and in vivo identification of clinically approved drugs that modify ACE2 expression (2020) (32)
- Unsupervised Context Sensitive Language Acquisition from a Large Corpus (2003) (32)
- Cooperation and cheating in microbial exoenzyme production--theoretical analysis for biotechnological applications. (2010) (32)
- Detecting similar binding pockets to enable systems polypharmacology (2017) (31)
- Neural modelling of psychiatric disorders (1995) (31)
- Acid-Induced Downregulation of ASS1 Contributes to the Maintenance of Intracellular pH in Cancer. (2018) (30)
- MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data (2010) (29)
- Predicting tissue-specific gene expression from whole blood transcriptome (2020) (29)
- Targeting purine synthesis in ASS1-expressing tumors enhances the response to immune checkpoint inhibitors (2020) (29)
- Beyond Synthetic Lethality: Charting the Landscape of Pairwise Gene Expression States Associated with Survival in Cancer. (2019) (28)
- Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes (2006) (28)
- Drugs that reverse disease transcriptomic signatures are more effective in a mouse model of dyslipidemia (2015) (27)
- A Novel Nutritional Predictor Links Microbial Fastidiousness with Lowered Ubiquity, Growth Rate, and Cooperativeness (2014) (27)
- Distributed Synchrony of Spiking Neurons in a Hebbian Cell Assembly (1999) (27)
- Patterns of Functional Damage in Neural Network Models of Associative Memory (1995) (27)
- Mutation–selection balance and compensatory mechanisms in tumour evolution (2020) (27)
- Effective Neuronal Learning with Ineffective Hebbian Learning Rules (2001) (26)
- Associative Memory in a Multimodular Network (1999) (26)
- Neural Processing of Counting in Evolved Spiking and McCulloch-Pitts Agents (2006) (26)
- A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data (2007) (26)
- Multi-knockout genetic network analysis: the Rad6 example (2004) (25)
- Systematic Cell Line-Based Identification of Drugs Modifying ACE2 Expression (2020) (25)
- Identification of drugs associated with reduced severity of COVID-19: A case-control study in a large population (2020) (25)
- Insulin-like growth factor 1 receptor activation promotes mammary gland tumor development by increasing glycolysis and promoting biomass production (2017) (24)
- Higher prevalence of homologous recombination deficiency in tumors from African Americans versus European Americans (2020) (24)
- Functional Representation of Enzymes by Specific Peptides (2007) (24)
- Therapeutic relevance of the protein phosphatase 2A in cancer (2016) (23)
- Criticality in tumor evolution and clinical outcome (2018) (23)
- Pyrvinium Pamoate Induces Death of Triple-Negative Breast Cancer Stem–Like Cells and Reduces Metastases through Effects on Lipid Anabolism (2020) (23)
- A Genome-Wide Systematic Analysis Reveals Different and Predictive Proliferation Expression Signatures of Cancerous vs. Non-Cancerous Cells (2013) (23)
- Causal Localization of Neural Function: The Shapley Value Method (2003) (22)
- Systematic condition-dependent annotation of metabolic genes. (2007) (22)
- Migration rather than proliferation transcriptomic signatures are strongly associated with breast cancer patient survival (2018) (22)
- Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5’-Phosphate Production in E. coli (2016) (22)
- Global map of physical interactions among differentially expressed genes in multiple sclerosis relapses and remissions. (2011) (21)
- Co-evolutionary networks of genes and cellular processes across fungal species (2009) (21)
- Computational evaluation of cellular metabolic costs successfully predicts genes whose expression is deleterious (2013) (21)
- Co-evolving cellular architectures by cellular programming (1996) (20)
- Synaptic Runaway in Associative Networks and the Pathogenesis of Schizophrenia (1998) (20)
- Evolution of reinforcement learning in foraging bees: a simple explanation for risk averse behavior (2002) (20)
- New Role for Interleukin‐13 Receptor α1 in Myocardial Homeostasis and Heart Failure (2017) (20)
- Genome‐wide prediction of synthetic rescue mediators of resistance to targeted and immunotherapy (2019) (19)
- Modeling Brain Energy Metabolism and Function: A Multiparametric Monitoring Approach (2006) (18)
- Unsupervised Efficient Learning and Representation of Language Structure (2003) (18)
- Recall and Recognition in an Attractor Neural Network Model of Memory Retrieval (1991) (18)
- Impact of the methylation classifier and ancillary methods on CNS tumor diagnostics. (2021) (17)
- Large population study identifies drugs associated with reduced COVID-19 severity. (2020) (17)
- TP53 cancerous mutations exhibit selection for translation efficiency. (2009) (17)
- Network-Free Inference of Knockout Effects in Yeast (2010) (17)
- Constraint-based functional similarity of metabolic genes: going beyond network topology (2007) (17)
- Learning Syntactic Constructions from Raw Corpora (2004) (16)
- The effects of telomere shortening on cancer cells: a network model of proteomic and microRNA analysis. (2015) (16)
- Nucleotide variation of regulatory motifs may lead to distinct expression patterns (2007) (16)
- Pathogenic mechanisms in ischemic damage: a computational study (1999) (16)
- PD-L1 recruits phospholipase C and enhances tumorigenicity of lung tumors harboring mutant forms of EGFR (2021) (15)
- Big data in basic and translational cancer research (2022) (15)
- Bridging computational, formal and psycholinguistic approaches to language (2004) (15)
- The Role of Temporal Trends in Growing Networks (2016) (14)
- A systematic genome-wide mapping of oncogenic mutation selection during CRISPR-Cas9 genome editing (2021) (14)
- Boosting Unsupervised Grammar Induction by Splitting Complex Sentences on Function Words (2007) (14)
- Neuronal regulation versus synaptic unlearning in memory maintenance mechanisms. (1998) (14)
- A single-iteration threshold Hamming network (1995) (14)
- Met Kinetic Signature Derived from the Response to HGF/SF in a Cellular Model Predicts Breast Cancer Patient Survival (2012) (14)
- Division of labor between YAP and TAZ in non-small cell lung cancer (2020) (13)
- Similarity in Perception: A Window to Brain Organization (2001) (13)
- Tumor methionine metabolism drives T-cell exhaustion in hepatocellular carcinoma (2020) (13)
- Evolutionary Conservation of Bacterial Essential Metabolic Genes across All Bacterial Culture Media (2015) (13)
- Synaptic pruning in development: a novel account in neural terms (1998) (13)
- A Division of Labor between YAP and TAZ in Non–Small Cell Lung Cancer (2020) (13)
- Reverting the molecular fingerprint of tumor dormancy as a therapeutic strategy for glioblastoma (2018) (13)
- Fair localization of function via multi-lesion analysis (2007) (12)
- The landscape of tiered regulation of breast cancer cell metabolism (2019) (12)
- Evolution of Reinforcement Learning in Uncertain Environments (2001) (12)
- Drugs that reverse disease transcriptomic signatures are more effective in a mouse model of dyslipidemia (2015) (12)
- MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data (2010) (12)
- Publisher Correction: Robust prediction of response to immune checkpoint blockade therapy in metastatic melanoma (2018) (12)
- Controlled analysis of neurocontrollers with informational lesioning (2003) (12)
- Inferring Functional Pathways from Multi-Perturbation Data (2006) (11)
- Functional Genomic Complexity Defines Intratumor Heterogeneity and Tumor Aggressiveness in Liver Cancer (2019) (11)
- Multiperturbation analysis of distributed neural networks: The case of spatial neglect (2009) (11)
- The ubiquitin ligase RNF5 determines acute myeloid leukemia growth and susceptibility to histone deacetylase inhibitors (2021) (10)
- Clinical outcomes of prexasertib monotherapy in recurrent BRCA wild-type high-grade serous ovarian cancer involve innate and adaptive immune responses (2020) (10)
- A Linearized Constraint-Based Approach for Modeling Signaling Networks (2012) (10)
- Seeking order in disorder: computational studies of neurologic and psychiatric diseases (1998) (10)
- The role of branched chain amino acid and tryptophan metabolism in rat’s behavioral diversity: Intertwined peripheral and brain effects (2015) (10)
- Maximal Sum of Metabolic Exchange Fluxes Outperforms Biomass Yield as a Predictor of Growth Rate of Microorganisms (2014) (10)
- Genome-scale metabolic modeling reveals SARS-CoV-2-induced metabolic changes and antiviral targets (2021) (10)
- Cysteine and Folate Metabolism Are Targetable Vulnerabilities of Metastatic Colorectal Cancer (2021) (9)
- Regulation of eIF2α by RNF4 promotes melanoma tumorigenesis and therapy resistance. (2020) (9)
- An attractor neural network model of semantic fact retrieval (1990) (9)
- A network-based method for predicting gene-nutrient interactions and its application to yeast amino-acid metabolism. (2009) (9)
- Higher-Order Genomic Organization of Cellular Functions in Yeast (2009) (9)
- Computer modeling: a new approach to the investigation of disease. (1997) (9)
- NMDA receptor delayed maturation and schizophrenia. (2000) (9)
- Optimal Signalling in Attractor Neural Networks (1993) (9)
- A Novel HMM-Based Method for Detecting Enriched Transcription Factor Binding Sites Reveals RUNX3 as a Potential Target in Pancreatic Cancer Biology (2010) (9)
- Serine Biosynthesis Is a Metabolic Vulnerability in IDH2-Driven Breast Cancer Progression (2021) (9)
- Predicting cancer prognosis and drug response from the tumor microbiome (2020) (9)
- From parallel to serial processing: A computational study of visual search (1999) (8)
- Associative memory in a multi-modular network. (1999) (8)
- MODELING BRAIN AND COGNITIVE DISORDERS (1996) (8)
- Reply to: ‘IMPRES does not reproducibly predict response to immune checkpoint blockade therapy in metastatic melanoma’ (2019) (8)
- Cancer-type specific aneuploidies hard-wire chromosome-wide gene expression patterns of their tissue of origin (2019) (8)
- Neuronal regulation: A biologically plausible mechanism for efficient synaptic pruning in development (1999) (8)
- Evolutionary Network Minimization: Adaptive Implicit Pruning of Successful Agents (2003) (8)
- Data-Driven Metabolic Pathway Compositions Enhance Cancer Survival Prediction (2016) (8)
- Evolution of Reinforcement Learning in Uncertain Environments: Emergence of Risk-Aversion and Matching (2001) (8)
- Immune Determinants of the Association between Tumor Mutational Burden and Immunotherapy Response across Cancer Types (2021) (8)
- COMPUTATIONAL STUDIES OF SYNAPTIC ALTERATIONS IN ALZHEIMER'S DISEASE (1996) (8)
- Cortical spreading depression and the pathogenesis of brain disorders: A computational and neural network-based investigation (2001) (8)
- Spikes that count: rethinking spikiness in neurally embedded systems (2004) (8)
- Hippocampus neuronal metabolic gene expression outperforms whole tissue data in accurately predicting Alzheimer's disease progression (2012) (8)
- Putative functional genes in idiopathic dilated cardiomyopathy (2018) (7)
- CAPN1 is a novel binding partner and regulator of the tumor suppressor NF1 in melanoma (2018) (7)
- Race is a key determinant of the human intratumor microbiome. (2022) (7)
- High-Dimensional Analysis of Evolutionary Autonomous Agents (2002) (7)
- Modeling Post-Stroke Cortical Map Reorganization (1996) (7)
- Genome‐scale metabolic modeling reveals SARS‐CoV‐2‐induced metabolic changes and antiviral targets (2021) (7)
- Single-Cell–Derived Primary Rectal Carcinoma Cell Lines Reflect Intratumor Heterogeneity Associated with Treatment Response (2020) (7)
- Synthetic lethality across normal tissues is strongly associated with cancer risk, onset, and tumor suppressor specificity (2019) (7)
- Understanding brain and cognitive disorders: the computational perspective. (1999) (6)
- History-Dependent Attractor Neural Networks (1992) (6)
- Localization of function in neurocontrollers (2002) (6)
- Identification of drugs associated with reduced severity of COVID-19 – a case-control study in a large population (2021) (6)
- Genetic interactions in yeast: is robustness going bust? (2007) (6)
- A Transcriptionally Distinct Subpopulation of Healthy Acinar Cells Exhibit Features of Pancreatic Progenitors and PDAC (2021) (6)
- Astrocyte immunometabolic regulation of the tumour microenvironment drives glioblastoma pathogenicity. (2022) (6)
- Extra-pyramidal symptoms in Alzheimer's disease: a hypothesis. (1992) (6)
- Understanding the Agent's Brain: A Quantitative Approach (2001) (6)
- NCI Think-Tank Meeting Report on Proteomic Cartography and Biomarkers at the Single-Cell Level: Interrogation of Premalignant Lesions. (2020) (6)
- Distributed synchrony in an attractor of spiking neurons (2000) (6)
- Strain level microbial detection and quantification with applications to single cell metagenomics (2020) (5)
- Global vs. local processing of compressed representations: A computational model of visual search (2000) (5)
- Analyzing Gene Expression from Whole Tissue vs. Different Cell Types Reveals the Central Role of Neurons in Predicting Severity of Alzheimer’s Disease (2012) (5)
- Comparison of Protein-Protein Interaction Confidence Assignment Schemes (2005) (5)
- AXL and Error-Prone DNA Replication Confer Drug Resistance and Offer Strategies to Treat EGFR-Mutant Lung Cancer (2022) (5)
- Author response: Phenotype-based cell-specific metabolic modeling reveals metabolic liabilities of cancer (2014) (5)
- Unsupervised language acquisition: syntax from plain corpus (2004) (5)
- The landscape of receptor-mediated precision cancer combination therapy via a single-cell perspective (2020) (5)
- Are There Representations in Embodied Evolved Agents? Taking Measures (2003) (5)
- Deconvolving clinically relevant cellular immune crosstalk from bulk gene expression using CODEFACS and LIRICS stratifies melanoma patients to anti-PD-1 therapy. (2022) (5)
- Learning Facial Attractiveness (2004) (5)
- Gut microbiota dependent anti-tumor immunity restricts melanoma growth in Rnf5−/− mice (2019) (4)
- Clinically oriented prediction of patient response to targeted and immunotherapies from the tumor transcriptome (2022) (4)
- Prediction and Subtyping of Hypertension from Pan-Tissue Transcriptomic and Genetic Analyses (2017) (4)
- A Neural Model of Delusions and Hallucinations in Schizophrenia (1994) (4)
- Integration of adeno-associated virus (AAV) into the genomes of most Thai and Mongolian liver cancer patients does not induce oncogenesis (2021) (4)
- Essential Genes Embody Increased Mutational Robustness to Compensate for the Lack of Backup Genetic Redundancy (2016) (4)
- The evolutionary link between mirror neurons and imitation: An evolutionary adaptive agents model (2005) (4)
- Solving a Delayed Response Task with Spiking (2003) (4)
- Effective Learning Requires Neuronal Remodeling of Hebbian Synapses (1999) (4)
- Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies (2021) (4)
- Integrated computational and experimental identification of p53, KRAS and VHL mutant selection associated with CRISPR-Cas9 editing (2018) (4)
- Constraint-Based Modelling Of Perturbed Organisms: A ROOM for improvement (2004) (4)
- Neural Modeling of Psychiatric Disorders (2004) (4)
- Reconstructing Ancestral Genomic Sequences by Co-Evolution: Formal Definitions, Computational Issues, and Biological Examples (2010) (3)
- Functional Alignment of Metabolic Networks. (2016) (3)
- p53 promotes the expression of gluconeogenesis-related genes and enhances hepatic glucose production (2013) (3)
- Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk (2022) (3)
- Spontaneous Evolution of Command Neurons, Place Cells and Memory Mechanisms in Autonomous Agents (1999) (3)
- Synthetic lethality-based prediction of anti-SARS-CoV-2 targets (2022) (3)
- Publisher Correction: Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly (2019) (3)
- Evolving Imitating Agents and the Emergence of a Neural Mirror System (2004) (3)
- A systematic genome-wide mapping of the oncogenic risks associated with CRISPR-Cas9 editing (2018) (3)
- Who Does What? A Novel Algorithm to Determine Function Localization (2000) (3)
- Rich Syntax from a Raw Corpus: Unsupervised Does It (2003) (3)
- The GENDULF algorithm: mining transcriptomics to uncover modifier genes for monogenic diseases (2020) (3)
- MPAPASS software enables stitched multiplex, multidimensional EV repertoire analysis and a standard framework for reporting bead-based assays (2022) (3)
- CSI-Microbes: Identifying cell-type specific intracellular microbes from single-cell RNA-seq data (2020) (3)
- Small is beautiful: near minimal evolutionary neurocontrollers obtained with self-organizing compressed encoding (2002) (3)
- A Calculator for COVID-19 Severity Prediction Based on Patient Risk Factors and Number of Vaccines Received (2022) (3)
- A comprehensive map of alternative polyadenylation in African American and European American lung cancer patients (2021) (3)
- Proteomics-based metabolic modelling reveals that fatty acid oxidation controls endothelial cell permeability (2014) (3)
- Nucleoporin-93 reveals a common feature of aggressive breast cancers: robust nucleocytoplasmic transport of transcription factors. (2022) (3)
- Fast computation in hamming and hopfield networks (1998) (2)
- National Cancer Institute Think-Tank Meeting Report on Proteomic Cartography and Biomarkers at the Single-Cell Level: Interrogation of Premalignant Lesions (2020) (2)
- [Some criteria of diagnostic ultrasound in pelvic tumours (author's transl)]. (1974) (2)
- The importance of nonlinear dendritic processing in multimodular memory networks (1999) (2)
- Cross-Species Analysis of Protein-protein Interaction Networks (2008) (2)
- Gene-expression profiles of pretreatment biopsies predict complete response of rectal cancer patients to preoperative chemoradiotherapy (2022) (2)
- [A double blind study of the treatment of threatened abortion with fenoterol hydrobromide (author's transl)]. (1981) (2)
- A landscape of synergistic drug combinations in non-small-cell lung cancer (2021) (2)
- Using a recently approved tumor mutational burden biomarker to stratify patients for immunotherapy may introduce a sex bias (2021) (2)
- Penumbral tissue damage following acute stroke: a computational investigation. (1999) (2)
- Multi-modular Associative Memory (1997) (2)
- Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples (2009) (2)
- Identifying the Landscape of Intratumoral Microbes via a Single Cell Transcriptomic Analysis (2020) (2)
- Synthetic lethality-based prediction of anti-SARS-CoV-2 targets (2021) (2)
- Deconvolving clinically relevant cellular immune crosstalk from bulk gene expression using CODEFACS and LIRICS (2021) (2)
- NRF2 mediates melanoma addiction to GCDH by modulating apoptotic signalling (2022) (2)
- A Ribosome Flow Model for Analyzing Translation Elongation - (Extended Abstract) (2011) (2)
- Metabolically remodeling the drug pipeline (2013) (2)
- Neuronal normalization provides effective learning through ineffective synaptic learning rules (2000) (2)
- Optimal firing in sparsely-connected low-activity attractor networks (1996) (2)
- CAPN 1 is a novel binding partner and regulator of the tumor suppressor NF 1 in melanoma (2019) (2)
- Taming the complexity of large models (2013) (2)
- Predicting patient treatment response and resistance via single-cell transcriptomics of their tumors (2022) (1)
- [Significance of hormones in the amniotic fluid. 1. Insulin and C-peptide]. (1984) (1)
- Unsupervised context sensitive language acquisition from large, untagged corpora (2003) (1)
- [Are products of the Maillard-reaction in babyfood toxic for the newborn? (AUTHOR'S TRANSL)]. (1976) (1)
- Correction: CAPN1 is a novel binding partner and regulator of the tumor suppressor NF1 in melanoma (2019) (1)
- Fraction of copy-number alterations significantly predicts survival following immunotherapy in a few cancers (2022) (1)
- Faculty Opinions recommendation of Tumor microbiome diversity and composition influence pancreatic cancer outcomes. (2019) (1)
- Abstract 968: Targeting FAK inhibits YAP-dependent tumor growth in uveal melanoma (2018) (1)
- Emerging command neuron circuitry in evolved autonomous agents (2001) (1)
- Abstract A69: Mutagenicity of urea cycle dysregulation and its implications for cancer immunotherapy (2018) (1)
- Neuronal Regulation and Hebbian Learning (2000) (1)
- Beyond Hebbian plasticity : Effective learning with ineffective Hebbian learning rules (1999) (1)
- Faculty Opinions recommendation of Exploring genetic suppression interactions on a global scale. (2017) (1)
- Publisher Correction: Mutation–selection balance and compensatory mechanisms in tumour evolution (2020) (1)
- Abstract SY26-02: Sherlock-Lung: Tracing lung cancer mutational processes in never smokers (2019) (1)
- Abstract 1527: Integrated computational and experimental analysis identifies the mitochondrial uncoupling protein 2 (Ucp2) as a key regulator of T cell anti-tumor function (2021) (1)
- Functional Alignment of Metabolic Networks (2015) (1)
- Deep characterization of cancer drugs mechanism of action by integrating large-scale genetic and drug screens (2022) (1)
- Evolution of language diversity : the survival of the fitness (2002) (1)
- Cross-species identification of cancer-resistance associated genes uncovers their relevance to human cancer risk (2021) (1)
- Flux-Based vs. Topology-Based Similarity of Metabolic Genes (2006) (1)
- Neurocontroller Analysis via Evolutionary Network Minimization (2006) (1)
- Predicting COVID-19 severity using major risk factors and received vaccines (2022) (1)
- Abstract IA02: Regulating amino acid metabolism can improve response to immunotherapy (2020) (1)
- Hebbian learning and neuronal regulation (2002) (1)
- Genome-Scale Metabolic Modeling Predicting Drug Targets and Biomarkers of Cancer via (2012) (1)
- [The syndrome of acute fatty liver in pregnancy]. (1979) (1)
- Multimodular networks and semantic memory impairments. (1999) (1)
- Synaptic Deletion and Compensation in Alzheimer’s Disease: a Neural Model (1993) (1)
- Amphiphilic nanocarrier-induced modulation of PLK1 and miR-34a leads to improved therapeutic response in pancreatic cancer (2018) (1)
- Genome-wide prediction of synthetic rescue mediators of resistance to targeted and immunotherapy (2018) (1)
- ENLIGHT: Pancancer response prediction to targeted and immunotherapies via tumor transcriptomics. (2022) (1)
- Author Correction: A systematic genome-wide mapping of oncogenic mutation selection during CRISPR-Cas9 genome editing (2022) (1)
- A SSIM Guided cGAN Architecture For Clinically Driven Generative Image Synthesis of Multiplexed Spatial Proteomics Channels (2022) (1)
- Using a Recently Approved Tumor Mutational Burden Biomarker to Stratify Patients for Immunotherapy May Introduce a Sex Bias. (2021) (1)
- [Blood gas analysis, electrocardiographic and cardiotokographic findings in a case of serius intrauterine asphyxia]. (1971) (1)
- [A comparison between so-called triple-diagnosis and surgical biopsy in diagnosis of the female breast (author's transl)]. (1976) (1)
- Chapter 4 Multimodular networks and semantic memory impairments (1999) (1)
- [Diagnosis of postpartum fetal conditions following cesarean section]. (1971) (1)
- Foraging Behaviors Evolution of Reinforcement Learning in Uncertain Environments : A Simple Explanation for Complex (2002) (1)
- Abstract 2711: Repurposing CAR targets in solid tumors from pan-cancer single-cell RNA-seq data (2022) (1)
- Toward the Educated Design of Bacterial Communities (2012) (1)
- [Influence of psychologic birth preparation on acid-base metabolism in mother and child]. (1971) (1)
- Dynamic memory maintenance (1998) (1)
- Nucleoporin-93 overexpression overcomes multiple nucleocytoplsamic trafficking bottlenecks to permit robust metastasis (2020) (1)
- VARIABILITY IN THE PATHOGENESIS OF ALZHEIMER DISEASE: ANALYTICAL RESULTS (1992) (1)
- Evolving Small Neurocontrollers with Self-Organized Compact Encoding (2003) (1)
- Abstract 5000: Cell cycle checkpoint kinase (CHK)1 inhibition induces immune modulation in recurrentBRCAwild-type high-grade serous ovarian cancer (HGSOC) patients (2019) (1)
- Whole exome precision oncology targeting synthetic lethal vulnerabilities across the tumor transcriptome (2020) (1)
- An Attractor Neural Network Model of Recall and Recognition (1990) (1)
- Supporting Online Material (2003) (1)
- Genomic and transcriptomic analyses identify a prognostic gene signature and predict response to therapy in pleural and peritoneal mesothelioma (2023) (0)
- Abstract 2914: Analyzing the tumor microbiome to predict cancer patient survival and drug response (2021) (0)
- Abstract 667: Genomic and transcriptomic profiling of malignant mesothelioma patients identifies gene signatures predictive of survival and response to immuno and chemotherapy (2021) (0)
- Abstract IA21: Blocking purine synthesis in cancer promotes response to immunotherapy (2020) (0)
- Ubiquitin ligases Siah1a/2 control alveolar macrophage functions to limit carcinogen-induced lung adenocarcinoma. (2023) (0)
- RNF5 Regulation of RBBP4 Defines Acute Myeloid Leukemia Growth and Susceptibility to Histone Deacetylase Inhibitors (2020) (0)
- FUNCTIONAL VERSUS STRUCTURAL DAMAGE IN MULTI-INFARCT DEMENTIA: A COMPUTATIONAL STUDY (1996) (0)
- Beyond synthetic lethality: charting the landscape of clinically relevant genetic interactions in cancer (2019) (0)
- Abstract SY26-02:Sherlock-Lung: Tracing lung cancer mutational processes in never smokers (2019) (0)
- Faculty Opinions recommendation of Synergistic drug combinations for cancer identified in a CRISPR screen for pairwise genetic interactions. (2017) (0)
- Moving ahead on harnessing synthetic lethality to fight cancer (2015) (0)
- Abstract 985: Is the transcriptome of primary and metastatic cancers closer to their origin or target tissues (2022) (0)
- MCP-1/CCR2 axis inhibition sensitizes the brain microenvironment against melanoma brain metastasis progression (2022) (0)
- Abstract 2039: Predicting abundance and expression of immune cells in patients’ head & neck tumor microenvironment from blood single-cell transcriptomics (2023) (0)
- Gene-expression profiles of pretreatment biopsies predict complete response of rectal cancer patients to preoperative chemoradiotherapy (2022) (0)
- Abstract B56: Tracing synthetic rescue reprogramming to counteract cancer resistance (2015) (0)
- Reconstructing ancestral gene content by coevolution Material (2009) (0)
- PD-L1 Recruits Phospholipase C and Enhances EGFR Signaling: Relevance to Resistance of EGFR-Mutated Lung Tumors to Immunotherapy (2020) (0)
- Single-iteration Threshold Hamming (2003) (0)
- Predicting patient response to cancer therapy via histopathology images. (2022) (0)
- Contribution of synthetic lethality to cancer risk, onset age, and tumor suppressor specificity across human tissues (2019) (0)
- Abstract 1906: Single cell precision oncology: A proof of principle (2022) (0)
- Abstract CC01-01: The landscape of precision cancer combination therapy: A single-cell perspective (2021) (0)
- Faculty of 1000 evaluation for Gene Essentiality Profiling Reveals Gene Networks and Synthetic Lethal Interactions with Oncogenic Ras. (2017) (0)
- Faculty Opinions recommendation of Exploring genetic interaction manifolds constructed from rich single-cell phenotypes. (2019) (0)
- Repurposing CAR targets in solid tumors via a pan-cancer single-cell transcriptome analysis (2021) (0)
- Faculty Opinions recommendation of Poly(ADP-ribose) drives pathologic α-synuclein neurodegeneration in Parkinson's disease. (2019) (0)
- Decoupling the correlation between cytotoxic and exhausted T lymphocyte transcriptomic signatures enhances melanoma immunotherapy response prediction (2023) (0)
- Localization of Function via Multi-Lesion Analysis: Theory And Applications (2007) (0)
- Insulin-like growth factor 1 receptor activation promotes mammary gland tumor development by increasing glycolysis and promoting biomass production (2017) (0)
- Abstract 946: A silver jubilee for synthetic lethality in cancer treatment: where do we stand (2023) (0)
- Faculty Opinions recommendation of The impact of sex on gene expression across human tissues. (2020) (0)
- Synaptic Pruning with Neuronal RegulationGal (2007) (0)
- Abstract PR05: Aspartate metabolism links the urea cycle with nucleic acid synthesis in cancerous proliferation (2016) (0)
- Altered gene expression in excitatory neurons is associated with Alzheimer's disease and its higher incidence in women (2023) (0)
- Harnessing synthetic lethality to predict the response to cancer treatment (2018) (0)
- Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression models (2023) (0)
- Abstract 700: CellSig: A data-driven model of cytokine activity identifies therapeutic targets for severe COVID-19 and cancer immunotherapy-induced colitis (2021) (0)
- Beyond synthetic lethality: multiple gene interaction types play a key functional role in cancer (2018) (0)
- Abstract B17: In-depth proteomics unveils fatty acid oxidation role in controlling vascular permeability (2015) (0)
- Abstract 3947: Intratumor heterogeneity impacts treatment response in rectal carcinoma (2017) (0)
- Spontaneous Evolution of Command Neurons , Pla e Cells and Memory Me hanisms inAutonomous (1999) (0)
- Evolutionary Network Minimization : Adaptive Impli it Pruning of Su essful (2003) (0)
- Abstract 4355: Prediction of cancer treatment response from histopathology images for a broad set of treatments and indications (2023) (0)
- Reviewers of Volume 12 (2006) (0)
- Integration of adeno-associated virus (AAV) into the genomes of most Thai and Mongolian liver cancer patients does not induce oncogenesis (2021) (0)
- Faculty Opinions recommendation of Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer. (2017) (0)
- Fibrolamellar carcinoma transcriptomic-based treatment prediction: complete response after nivolumab and ipilimumab (2022) (0)
- Faculty Opinions recommendation of Prioritization of cancer therapeutic targets using CRISPR-Cas9 screens. (2019) (0)
- Abstract 3115: Predicting in-depth mechanism of action of cancer drugs (2023) (0)
- Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly (2018) (0)
- Clinical and Laboratory Features in the Israeli Population with COVID-19 Infection after Pfizer-BioNTech mRNA Booster Vaccination (2022) (0)
- [On the use of fenoterolhydrobromide in the treatment of imminent abortion (author's transl)]. (1978) (0)
- On Parallel versus Serial Processing: A Computational Study of Visual Search (1997) (0)
- Single-Iteration Threshold Hamming Networks (1992) (0)
- Systems analysis of intracellular pH vulnerabilities for cancer therapy (2018) (0)
- Faculty Opinions recommendation of Off-target toxicity is a common mechanism of action of cancer drugs undergoing clinical trials. (2019) (0)
- Pan-cancer analysis of patient tumor single-cell transcriptomes identifies promising selective and safe CAR targets in head and neck cancer (2023) (0)
- Melanoma Addiction to GCDH is Mediated by NRF2 Tumor Suppressor Function (2021) (0)
- Abstract 3179: Deconvolving bulk gene expression to chart the immune activity and crosstalk in the tumor microenvironment (2021) (0)
- MPA PASS Enables Stitched Multiplex Multi-Dimensional EV Repertoire Analysis (2021) (0)
- Abstract 543: Harnessing synthetic lethality to predict clinical outcomes of cancer treatment (2017) (0)
- Abstract 3169: Decoupling the correlation between cytotoxic and exhausted T lymphocyte transcriptomic signatures in melanoma enhances immunotherapy response prediction (2023) (0)
- Abstract 1407: Next generation transcriptomics-based precision oncology (2023) (0)
- Abstract 473: GeneMasking: A new approach for inferring the functional role of cancer driver genes and its application in prostate cancer (2022) (0)
- Author response: Co-targeting the tumor endothelium and P-selectin-expressing glioblastoma cells leads to a remarkable therapeutic outcome (2017) (0)
- Abstract 3583: Identifying and testing cancer-derived synthetic-lethal anti-SARS-CoV-2 targets (2022) (0)
- Patterns of damage in neural networks: The effects of lesion area, shape and number (1994) (0)
- Publisher Correction: Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly (2019) (0)
- Putative functional genes in idiopathic dilated cardiomyopathy (2018) (0)
- Abstract 2658: Oncogenicity of adeno-associated virus (AAV) integration into the genomes of liver cancer patients depends on the overlap between the AAV integration site and the AAV X gene (2021) (0)
- Abstract LB-149: Genome-wide prediction of synthetic rescue mediators of resistance to targeted and immunotherapy (2019) (0)
- RNF5 Defines Acute Myeloid Leukemia Growth and Susceptibility to Histone Deacetylase Inhibitors (2020) (0)
- Building the KOMODO media database (2015) (0)
- Higher prevalence of homologous recombination-deficiency in lung squamous carcinoma from African Americans (2019) (0)
- Predicting tumor immune microenvironment and checkpoint therapy response of head & neck cancer patients from blood immune single-cell transcriptomics (2023) (0)
- A Detection by Compression Theory of "Visual Search" (2000) (0)
- Abstract A188: Harnessing synthetic lethality to predict the response to cancer treatments (2018) (0)
- Localization of Function Via Lesion (2004) (0)
- A Network for Semantic and Episodic Associations Showing Disturbances Due to Neural Loss (1993) (0)
- Faculty Opinions recommendation of Genome-wide CRISPR screen reveals host genes that regulate SARS-CoV-2 infection. (2020) (0)
- Effective And Optimal Storage of Memory Patterns With Variable Coding Levels (1999) (0)
- Faculty Opinions recommendation of Immune-centric network of cytokines and cells in disease context identified by computational mining of PubMed. (2019) (0)
- Correction: Transcriptional Regulation by CHIP/LDB Complexes (2011) (0)
- PATH-46. DIAGNOSTIC IMPACT OF THE CNS TUMOR METHYLATION PROFILING IN A NEUROPATHOLOGY CONSULT PRACTICE (2021) (0)
- 3030 – THE EPIGENETIC REGULATOR LANDSCAPE OF STEMNESS NETWORKS IN ACUTE MYELOID LEUKEMIA (2022) (0)
- Publisher Correction: Robust prediction of response to immune checkpoint blockade therapy in metastatic melanoma (2018) (0)
- Transcriptomics based prediction of survival and response to therapy in malignant mesothelioma (2022) (0)
- Sex Biases in Cancer and Autoimmune Disease Incidence Are Strongly Positively Correlated with Mitochondrial Gene Expression across Human Tissues (2022) (0)
- Abstract IA07: UVB-induced tumor heterogeneity directs immune response in melanoma (2020) (0)
- Nucleoporin-93 Overcomes Multiple Nucleocytoplasmic Trafficking Bottlenecks and Permits Robust Metastasis (2021) (0)
- Are Scale-Free Networks Functionally Robust ? (2004) (0)
- Abstract 1053: A large cellular screen charting the landscape of synergistic drug combinations in lung cancer (2021) (0)
- stress in advanced breast cancer Metabolic associations of reduced proliferation and oxidative Updated (2012) (0)
- Translational reprogramming marks adaptation to asparagine restriction in cancer (2019) (0)
- A Neural Model for a Randomized Frequency-Spatial Transformation (1993) (0)
- Abstract SY45-02: Harnessing genetic interactions to advance whole-exome precision cancer treatment (2019) (0)
- Comparing Acceptability in Magnitude Estimation Tests to an Unsupervised Model of Language Acquisition (2004) (0)
- Abstract 4987: ASS1 downregulation facilitates cancer cell survival in acidic environment (2017) (0)
- Neuronal Regulation Implements Efficient Synaptic Pruning (1998) (0)
- Abstract 957: Prediction of patient response to targeted and immunotherapies from the tumor transcriptome in a wide set of indications and clinical trials (2023) (0)
- Faculty Opinions recommendation of Systematic analysis of drug vulnerabilities conferred by tumor suppressor loss. (2019) (0)
- Lawrence Berkeley National Laboratory Lawrence Berkeley National Laboratory Title Medical Sequencing at the extremes of Human Body Mass Permalink (0)
- Systematic analysis of electronic health records identifies drugs reducing risk of COVID-19 hospitalization and severity (2020) (0)
- Control of alveolar macrophage differentiation by Siah1a/2 ubiquitin ligases limits carcinogen-induced lung adenocarcinoma (2022) (0)
- Abstract 3155: Harnessing synthetic rescues to evaluate and mitigate resistance to cancer therapy (2017) (0)
- Frequency-Spatial Transformation: A Proposal for Parsimonious Intra-Cortical Communication (1996) (0)
- Abstract PO093: Identifying the landscape of intratumoral microbes via a single cell transcriptomic analysis (2021) (0)
- 536 Decoupling cytotoxic T lymphocyte and exhausted T lymphocyte transcriptomic signatures enhances immune checkpoint inhibitors response prediction in melanoma (2022) (0)
- Abstract 1558: Data-driven approach to detecting novel gene interactions in cancer with applications to drug response prediction and cancer stratification (2017) (0)
- Synthetic lethality-based prediction of cancer treatment response from histopathology images (2022) (0)
- Abstract LB-017: Combining tumor mutational burden, CD8+ T-cell abundance and PD1 mRNA expression accurately predicts response to anti-PD1/PDL1 therapy across cancers (2019) (0)
- PO-267 PHGDH and PSAT confer metabolic vulnerability to IDH2-driven reprogramming in breast cancer (2018) (0)
- Preclinical optimization of a GPC2-targeting CAR T-cell therapy for neuroblastoma (2023) (0)
- Abstract LB062: Identifying novel targets for CAR-T therapies from single cell RNA-sequencing data (2023) (0)
- scRNA-seq analysis of colon and esophageal tumors uncovers abundant microbial reads in myeloid cells undergoing proinflammatory transcriptional alterations (2023) (0)
- A neural network model for a randomized frequency-spatial transformation (1991) (0)
- Genome-Scale Modeling of Tissue and Cancer Metabolism (2014) (0)
- Abstract 3048: CSI-Microbes: Identifying cell-type specific intracellular microbes from single-cell RNA-seq data (2022) (0)
- A New Gene Expression Meta‐Analysis Technique and its Application to Co‐Analyze Three Independent Lung Cancer Datasets (2010) (0)
- High-Dimensional Analysis of EvolutionaryAutonomous (2003) (0)
- Correction: Analyzing Gene Expression from Whole Tissue vs. Different Cell Types Reveals the Central Role of Neurons in Predicting Severity of Alzheimer’s Disease (2012) (0)
- Abstract 2688: The landscape of precision cancer combination therapy: a single-cell perspective (2021) (0)
- High Density Domain-Focused CRISPR Screens Reveal Novel Epigenetic Regulators of HOX/MEIS Activation in Acute Myeloid Leukemia (2023) (0)
- Dopaminergic Modulation and Neural Fatigue in Discrete Time Sigmoidal Networks (1993) (0)
- Reconstructing ancestral gene content by coevolution Material Supplemental (2009) (0)
- Abstract PR09: Harnessing synthetic lethality to predict clinical outcomes of cancer treatment (2017) (0)
- Abstract LB200: A transcriptionally distinct subpopulation of healthy acinar cells exhibit features of pancreatic progenitors and pancreatic ductal adeno carcinoma (2021) (0)
- Faculty Opinions recommendation of Massively multiplex chemical transcriptomics at single-cell resolution. (2020) (0)
- Abstract A20: Gαq controls the Hippo pathway through MOB1 tyrosine phosphorylation by FAK (2020) (0)
- Metabolic modeling predicts perturbations extending lifespan in yeast and counteracting aging in mammalian muscle (2012) (0)
- Transcriptomic Profiling of Plasma Extracellular Vesicles Enables Reliable Annotation of the Cancer-specific Transcriptome and Molecular Subtype (2023) (0)
- Integrated proteotranscriptomics of breast cancer reveals globally increased protein-mRNA concordance associated with subtypes and survival (2018) (0)
- Abstract 29: The recently approved high-TMB criteria may introduce a sex bias in response to PD1 inhibitors (2021) (0)
- Phylogenetic analysis of longitudinal melanoma samples to reveal convergent evolution and markers of immunotherapy resistance. (2018) (0)
- Abstract A46: Charting the synthetic lethality landscape in pediatric cancer to advance whole-exome precision-based treatments (2020) (0)
- Abstract PR004: High-density CRISPR screens reveal mechanisms of chromatin regulation of stemness networks in acute myeloid leukemia (2022) (0)
- Abstract A32: Systematic reconstruction of the cancer synthetic lethal network and its application for the identification of selective cancer drug targets (2013) (0)
- Glucose-6-Phosphate Dehydrogenase (G6PD) Deficiency and Long-Term Risk of Immune-Related diseases (2023) (0)
- Analyzing the tumor microbiome to predict cancer patient survival and drug response (2020) (0)
- Epigenomic tumor evolution modeling with single-cell methylation data profiling (2021) (0)
- Immunoproteasome expression is associated with better prognosis and response to checkpoint therapies in melanoma (2020) (0)
- Abstract A023: Cell migration is a stronger predictor of patient survival in breast cancer than cell proliferation (2018) (0)
- The landscape of tiered regulation of breast cancer cell metabolism (2019) (0)
- 1155 CO-TARGETING MAPK SIGNALING AND ASPARAGINE METABOLISM BY MEK INHIBITOR + L-ASPARAGINASE COMBINATION IN PANCREATIC CANCER (2020) (0)
- Prediction of cancer treatment response from histopathology images through imputed transcriptomics (2022) (0)
- Faculty Opinions recommendation of Loss of heterozygosity of essential genes represents a widespread class of potential cancer vulnerabilities. (2020) (0)
- Sex biases in cancer and autoimmune disease incidence are correlated across human tissues (2021) (0)
- Robust prediction of response to immune checkpoint blockade therapy in metastatic melanoma (2018) (0)
- Neuronal homeostasis and rem sleep (1996) (0)
- Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies (2021) (0)
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What Schools Are Affiliated With Eytan Ruppin?
Eytan Ruppin is affiliated with the following schools:
