Frederick R. Blattner
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Computer Science
Frederick R. Blattner's Degrees
- PhD Computer Science Stanford University
- Masters Computer Science Stanford University
- Bachelors Mathematics University of California, Berkeley
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(Suggest an Edit or Addition)Frederick R. Blattner's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- The complete genome sequence of Escherichia coli K-12. (1997) (7569)
- Mauve: multiple alignment of conserved genomic sequence with rearrangements. (2004) (3624)
- Genome sequence of enterohaemorrhagic Escherichia coli O157:H7 (2001) (2049)
- Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli (2002) (1482)
- On Differential Variability of Expression Ratios: Improving Statistical Inference about Gene Expression Changes from Microarray Data (2001) (805)
- Charon phages: safer derivatives of bacteriophage lambda for DNA cloning. (1977) (706)
- A large-conductance mechanosensitive channel in E. coli encoded by mscL alone (1994) (699)
- Emergent Properties of Reduced-Genome Escherichia coli (2006) (649)
- Genome-wide expression profiling in Escherichia coli K-12. (1999) (617)
- Functional Genomics: Expression Analysis ofEscherichia coli Growing on Minimal and Rich Media (1999) (608)
- Escherichia coli K-12: a cooperatively developed annotation snapshot—2005 (2006) (605)
- Genome Sequence of Yersinia pestis KIM (2002) (522)
- Molecular Evolution of a Pathogenicity Island from Enterohemorrhagic Escherichia coli O157:H7 (1998) (457)
- Complete Genome Sequence and Comparative Genomics of Shigella flexneri Serotype 2a Strain 2457T (2003) (410)
- RNA expression analysis using a 30 base pair resolution Escherichia coli genome array (2000) (383)
- Sequence of Shiga Toxin 2 Phage 933W fromEscherichia coli O157:H7: Shiga Toxin as a Phage Late-Gene Product (1999) (375)
- The Complete Genome Sequence of Escherichia coli DH10B: Insights into the Biology of a Laboratory Workhorse (2008) (369)
- Comparative Genomics of Salmonellaenterica Serovar Typhi Strains Ty2 and CT18 (2003) (365)
- Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale (2006) (365)
- In silico design and adaptive evolution of Escherichia coli for production of lactic acid. (2005) (361)
- Functional Rice Centromeres Are Marked by a Satellite Repeat and a Centromere-Specific Retrotransposon Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.003079. (2002) (353)
- Transcription Profiling of the Stringent Response in Escherichia coli (2007) (351)
- Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes (1993) (341)
- Structural and functional studies of the early T lymphocyte activation 1 (Eta-1) gene. Definition of a novel T cell-dependent response associated with genetic resistance to bacterial infection (1989) (318)
- Engineering a reduced Escherichia coli genome. (2002) (276)
- Genome-Wide Expression Analysis Indicates that FNR of Escherichia coli K-12 Regulates a Large Number of Genes of Unknown Function (2005) (274)
- IscR‐dependent gene expression links iron‐sulphur cluster assembly to the control of O2‐regulated genes in Escherichia coli (2006) (263)
- Markerless gene replacement in Escherichia coli stimulated by a double-strand break in the chromosome. (1999) (257)
- Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes. (1992) (245)
- Genome of Bacteriophage P1 (2004) (241)
- High-Density Microarray-Mediated Gene Expression Profiling of Escherichia coli (2001) (236)
- Global regulation of gene expression in Escherichia coli (1993) (228)
- Iron acquisition in plague: modular logic in enzymatic biogenesis of yersiniabactin by Yersinia pestis. (1998) (219)
- DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication. (1993) (218)
- Versatile insertion plasmids for targeted genome manipulations in bacteria: isolation, deletion, and rescue of the pathogenicity island LEE of the Escherichia coli O157:H7 genome (1997) (216)
- Cloning human fetal gamma globin and mouse alpha-type globin DNA: preparation and screening of shotgun collections. (1978) (211)
- Complete DNA Sequence and Analysis of the Large Virulence Plasmid of Shigella flexneri (2001) (208)
- Global Transcriptional Programs Reveal a Carbon Source Foraging Strategy by Escherichia coli*♦ (2005) (204)
- Identification and Characterization of lpfABCC′DE, a Fimbrial Operon of Enterohemorrhagic Escherichia coli O157:H7 (2002) (194)
- Systematic Mutagenesis of the Escherichia coli Genome (2004) (194)
- Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli. (2003) (184)
- ASAP, a systematic annotation package for community analysis of genomes (2003) (183)
- A new human immunoglobulin VH family preferentially rearranged in immature B-cell tumours (1988) (172)
- Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. (1995) (171)
- Direct evidence for DNA bending at the lambda replication origin. (1987) (169)
- Characterization of twenty-six new heat shock genes of Escherichia coli (1993) (165)
- New map of bacteriophage lambda DNA (1980) (164)
- The Export of Coat Protein from Enteroaggregative Escherichia coli by a Specific ATP-binding Cassette Transporter System* (2003) (164)
- Sequence analysis of four new heat-shock genes constituting the hslTS/ibpAB and hslVU operons in Escherichia coli. (1993) (159)
- Construction of coliphage lambda Charon vectors with BamHI cloning sites. (1980) (158)
- DNA Sequencing and Analysis of the Low-Ca2+-Response Plasmid pCD1 of Yersinia pestis KIM5 (1998) (157)
- Lambda Charon vectors (Ch32, 33, 34 and 35) adapted for DNA cloning in recombination-deficient hosts. (1983) (156)
- Analysis of the boundaries of Salmonella pathogenicity island 2 and the corresponding chromosomal region of Escherichia coli K-12 (1997) (140)
- Mapping of heavy chain genes for mouse immunoglobulins M and D. (1980) (139)
- Complete DNA Sequence and Detailed Analysis of the Yersinia pestis KIM5 Plasmid Encoding Murine Toxin and Capsular Antigen (1998) (138)
- The molecular biology of immunoglobulin D (1984) (130)
- Charons 36 to 40: multi enzyme, high capacity, recombination deficient replacement vectors with polylinkers and polystuffers. (1987) (125)
- Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. (1993) (124)
- Regulatory network of Escherichia coli: consistency between literature knowledge and microarray profiles. (2003) (121)
- Hybridization of labeled RNA to DNA in agarose gels. (1975) (117)
- Structure of genes for membrane and secreted murine IgD heavy chains (1982) (115)
- Metabolic engineering of a reduced-genome strain of Escherichia coli for L-threonine production (2009) (113)
- SspA is required for acid resistance in stationary phase by downregulation of H‐NS in Escherichia coli (2005) (111)
- Sequence-induced DNA curvature at the bacteriophage λ origin of replication (1985) (111)
- Deletions and insertions in the immunity region of coliphage lambda: revised measurement of the promoter-startpoint distance. (1974) (111)
- Recombination between higher plant DNA and the Ti plasmid of Agrobacterium tumefaciens. (1980) (109)
- Genome Sequence of the Plant-Pathogenic Bacterium Dickeya dadantii 3937 (2011) (109)
- Low-mutation-rate, reduced-genome Escherichia coli: an improved host for faithful maintenance of engineered genetic constructs (2012) (108)
- Characterization of Cah, a calcium‐binding and heat‐extractable autotransporter protein of enterohaemorrhagic Escherichia coli (2002) (107)
- Strains of Escherichia coli O157:H7 Differ Primarily by Insertions or Deletions, Not Single-Nucleotide Polymorphisms (2002) (104)
- Reduced evolvability of Escherichia coli MDS42, an IS-less cellular chassis for molecular and synthetic biology applications (2010) (102)
- Construction and characterization of the hybrid bacteriophage lambda Charon vectors for DNA cloning (1979) (101)
- Initiation protein induced helix destabilization at the λ origin: A prepriming step in DNA replication (1988) (100)
- Genome-Scale Analysis of the Uses of the Escherichia coli Genome: Model-Driven Analysis of Heterogeneous Data Sets (2003) (98)
- Mouse immunoglobulin D: messenger RNA and genomic DNA sequences. (1980) (97)
- Human heavy-chain variable region gene family nonrandomly rearranged in familial chronic lymphocytic leukemia. (1987) (93)
- A Genomic Sample Sequence of the Entomopathogenic Bacterium Photorhabdus luminescens W14: Potential Implications for Virulence (2000) (93)
- Uropathogenic Escherichia coli use d‐serine deaminase to modulate infection of the murine urinary tract (2003) (90)
- RNA Synthesis Startpoints in Bacteriophage λ: Are the Promoter and Operator Transcribed? (1972) (90)
- Genomic Interspecies Microarray Hybridization: Rapid Discovery of Three Thousand Genes in the Maize Endophyte,Klebsiella pneumoniae 342, by Microarray Hybridization with Escherichia coli K-12 Open Reading Frames (2001) (90)
- Shotgun optical maps of the whole Escherichia coli O157:H7 genome. (2001) (90)
- Physical structure of the replication origin of bacteriophage lambda. (1977) (88)
- Sequence of the cloned gene for the constant region of murine gamma 2b immunoglobulin heavy chain. (1979) (85)
- Mouse IgA heavy chain gene sequence: implications for evolution of immunoglobulin hinge axons. (1981) (83)
- Global Transcriptional Effects of a Suppressor tRNA and the Inactivation of the Regulator frmR (2004) (81)
- Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes. (1993) (78)
- Predicting bacterial transcription units using sequence and expression data (2003) (74)
- Human immunoglobulin D: genomic sequence of the delta heavy chain. (1985) (72)
- A Whole-Genome Shotgun Optical Map of Yersinia pestis Strain KIM (2002) (72)
- Single-Molecule Approach to Bacterial Genomic Comparisons via Optical Mapping (2004) (70)
- Rapid nucleotide separation by chromatography on cation-exchange columns (1967) (70)
- Restriction maps for twenty-one Charon vector phages (1980) (70)
- Unusual sequences in the murine immunoglobulin μ–δ heavy-chain region (1983) (70)
- Recombinant protein production in an Escherichia coli reduced genome strain. (2007) (68)
- RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12 (2000) (68)
- Indispensability of Horizontally Transferred Genes and Its Impact on Bacterial Genome Streamlining. (2016) (65)
- Simultaneous expression of immunoglobulin mu and delta heavy chains by a cloned B-cell lymphoma: a single copy of the VH gene is shared by two adjacent CH genes. (1982) (62)
- Conditional Lethal Amber Mutations in Essential Escherichia coli Genes (2004) (57)
- J genes for heavy chain immunoglobulins of mouse. (1980) (55)
- Structural analysis of the murine IgG3 constant region gene. (1984) (55)
- APPENDIX I A Molecular Map of Coliphage Lambda (1983) (53)
- Binding and bending of the lambda replication origin by the phage O protein. (1985) (53)
- Mouse immunoglobulin D: construction and characterization of a cloned delta chain cDNA. (1980) (52)
- Complete Genome Sequence and Comparative Genomics of Shigella flexneri Serotype 2 a Strain 2457 T † (2003) (50)
- Immunoglobulin D switching can occur through homologous recombination in human B cells (1990) (49)
- Structure of the constant and 3' untranslated regions of the murine gamma 2b heavy chain messenger RNA. (1979) (48)
- Distance from a Promoter Mutation to an RNA Synthesis Startpoint on Bacteriophage λ DNA (1972) (48)
- Cloning human fetal gamma globin and mouse alpha-type globin DNA: characterization and partial sequencing. (1978) (47)
- Dissection and comparative anatomy of the origins of replication of lambdoid phages. (1979) (46)
- Least-squares method for restriction mapping. (1978) (46)
- Identification and Characterization of a Novel Uropathogenic Escherichia coli-Associated Fimbrial Gene Cluster (2004) (45)
- Urease of Enterohemorrhagic Escherichia coli: Evidence for Regulation by Fur and a trans-Acting Factor (2002) (45)
- Bacteriophage recombineering in the lytic state using the lambda red recombinases (2012) (44)
- Identification and characterization of Escherichia coli RS218-derived islands in the pathogenesis of E. coli meningitis. (2006) (44)
- Genetic structure of the replication origin of bacteriophage lambda. (1977) (42)
- erratum Genome sequence of enterohaemorrhagic Escherichia coli 0157:H7 (2001) (40)
- Nucleotide sequence of the Q gene and the Q to S intergenic region of bacteriophage lambda. (1982) (38)
- The human immunoglobulin Cμ–Cδlocus: complete nucleotide sequence and structural analysis (1989) (38)
- Nucleotide Sequence Analysis of the Enteropathogenic Escherichia coli Adherence Factor Plasmid pMAR7 (2006) (37)
- GRIL: genome rearrangement and inversion locator (2004) (37)
- The repeat sequence of a hermit crab satellite deoxyribonucleic acid is (-T-A-G-G-)n-(-A-T-C-C-)n. (1974) (36)
- Sequence of the gene for the constant region of the mu chain of Balb/c mouse immunoglobulin. (1981) (36)
- Mapping using gene encyclopaedias (1987) (34)
- Development of a Biofilm Production-Deficient Escherichia coli Strain as a Host for Biotechnological Applications (2006) (33)
- APPENDIX II Complete Annotated Lambda Sequence (1983) (32)
- Escherichia coli K1-Specific Bacteriophage CUS-3 Distribution and Function in Phase-Variable Capsular Polysialic Acid O Acetylation (2007) (31)
- Systematic Mutagenesis of the Escherichia coli Genome (2004) (31)
- Illegitimate recombination generates a class switch from C mu to C delta in an IgD-secreting plasmacytoma. (1984) (30)
- Sequence of the promoter-operator proximal region of the major leftward RNA of bacteriophage lambda. (1975) (30)
- Construction of chimeric phages and plasmids containing the origin of replication of bacteriophage lambda. (1977) (30)
- Concerted evolution of the mouse immunoglobulin gamma chain genes. (1984) (30)
- Genome sequencing on both strands: the Janus strategy. (1993) (28)
- Expression of two recombinant chloramphenicol acetyltransferase variants in highly reduced genome Escherichia coli strains (2007) (26)
- Enhancing the Translational Capacity of E. coli by Resolving the Codon Bias. (2018) (26)
- Subdivision of the Escherichia coli K-12 genome for sequencing: manipulation and DNA sequence of transposable elements introducing unique restriction sites. (1998) (26)
- Insertion of DNA carrying ribosomal protein genes of Escherichia coli into Charon vector phages. (1977) (24)
- Identification and Characterization of lpfABCC DE , a Fimbrial Operon of Enterohemorrhagic Escherichia coli O 157 : H 7 (2002) (24)
- Correlation of the genetic and physical maps in the central region of the bacteriophage Mu genome. (1980) (23)
- Homologous recombination catalyzed by mammalian cell extracts in vitro. (1984) (22)
- Initiation protein induced helix destabilization at the lambda origin: a prepriming step in DNA replication. (1988) (22)
- Sequence organization of the origins of DNA replication in lambdoid coliphages. (1981) (20)
- Formal description of a DNA oriented computer language (1982) (20)
- Expression of ribosomal protein genes cloned in Charon vector phages and identification of their promoters. (1977) (20)
- Sequence-induced DNA curvature at the bacteriophage lambda origin of replication. (1985) (20)
- Ultrafast DNA recovery from agarose by centrifugation through a paper slurry. (1994) (20)
- Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution (2006) (19)
- Nucleotide sequence of the chi recombinational hot spot chi +D in bacteriophage lambda (1981) (19)
- Polymorphic Amplified Typing Sequences Provide a Novel Approach to Escherichia coli O157:H7 Strain Typing (2002) (19)
- Complete Genome Sequence and Comparative Genomics of Shigella flexneri Serotype 2a Strain 2457T (2003) (19)
- DNA looping induced by bacteriophage λ O protein: Implications for formation of higher order structures at the gl origin of replication (1989) (19)
- Organization of ribosomal protein genes in Escherichia coli. I. Physical structure of DNA from transducing lambda phages carrying genes from the aroE-str region. (1976) (19)
- Neural network input representations that produce accurate consensus sequences from DNA fragment assemblies (1999) (18)
- Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria (2007) (17)
- Personal access to sequence databases on personal computers (1986) (17)
- Analysis and Comparison of the Mouse and Human Immunoglobulin Heavy Chain JH–Cμ–Cδ Locus (1996) (17)
- Mouse spleen and IgD-secreting plasmacytomas contain multiple IgD δ chain RNAs (1982) (17)
- Q-mediated late gene transcription of bacteriophage lambda: RNA start point and RNase III processing sites in vivo. (1988) (16)
- Metal-binding chimeric antibodies expressed in Escherichia coli. (1992) (15)
- Replication of bacteriophage lambda DNA. Examination of variants containing double origins and observation of a bias in directionality. (1982) (14)
- RNA synthesis startpoints in bacteriophage lambda: are the promoter and operator transcribed? (1972) (13)
- Isolation and characterization of transducing phage coding for sigma subunit of Escherichia coli RNA polymerase. (1979) (13)
- GENETIC ASPECTS OF IgD EXPRESSION: I. ANALYSIS OF THE CµCδ COMPLEX IN COMMITTED AND UNCOMMITTED DNA (1982) (13)
- A new asset for pathogen informatics--the Enteropathogen Resource Integration Center (ERIC), an NIAID Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Disease. (2007) (12)
- A computer package for DNA sequence analysis (1984) (12)
- Rapid detection of antigen binding by antibody fragments expressed in the periplasm of Escherichia coli. (1991) (11)
- Recombinant antibody-metallothionein: design and evaluation for radioimmunoimaging. (1992) (11)
- Enhancing the translational capacity of E. coli by resolving the codon bias (2018) (11)
- Improving the Quality of Automatic DNA Sequence Assembly Using Fluorescent Trace-Data Classifications (1996) (11)
- Interpreting microarray expression data using text annotating the genes (2002) (10)
- GETools: gene expression tool for analysis of transcriptome experiments in E. coli (2002) (10)
- GENETIC ASPECTS OF IgD EXPRESSION: III. FUNCTIONAL IMPLICATIONS OF THE SEQUENCE AND ORGANIZATION OF THE Cδ GENE (1982) (10)
- A Precision Method for Generation of Solvent Gradients. (1966) (8)
- Biological frontiers. (1983) (8)
- Periplasmic Delivery of Biologically Active Human Interleukin-10 in Escherichia coli via a Sec-Dependent Signal Peptide (2012) (7)
- Mapping of Point Mutations on the Physical Map of Coliphage Lambda: Absence of Clustering for Odd-Numbered Exchanges (1974) (7)
- Erratum: Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T (Infection and Immunity (2003) 71:5 (2775-2786)) (2003) (7)
- Asymmetric effects of deletions and substitutions on high negative interference in coliphage lambda. (1982) (7)
- The human immunoglobulin Cμ–Cδ locus: regulation of ,μ and δ RNA expression during B cell development (1989) (6)
- Analysis and comparison of the mouse and human immunoglobulin heavy chain JH-Cmu-Cdelta locus. (1996) (6)
- Increasing Consensus Accuracy in DNA Fragment Assemblies by Incorporating Fluorescent Trace Representations (1997) (5)
- Simultaneous preparation of up to 768 single-stranded DNAs for use as templates in DNA sequencing (1991) (5)
- Nucleotide Sequence Analysis of the Enteropathogenic Escherichia coli Adherence Factor Plasmid pMAR 7 ‡ (2006) (5)
- The human immunoglobulin C mu-C delta locus: complete nucleotide sequence and structural analysis. (1989) (4)
- Field inversion gel electrophoresis applied to the rapid, multi-enzyme restriction mapping of phage lambda clones. (1990) (4)
- DNA looping induced by bacteriophage lambda O protein: implications for formation of higher order structures at the lambda origin of replication. (1989) (4)
- GENETIC ASPECTS OF IgD EXPRESSION: II. MULTIPLE FORMS OF δ CHAIN mRNA IN NORMAL MOUSE SPLEEN, MOUSE B‐CELL LYMPHOMAS AND MOUSE AND HUMAN MYELOMAS * (1982) (4)
- Unusual sequences in the murine immunoglobulin mu-delta heavy-chain region. (1983) (4)
- Cloning and characterization of the Escherichia coli chromosomal region surrounding the dnaG gene, with a correlated physical and genetic map of dnaG generated via transposon Tn5 mutagenesis (2004) (3)
- Definition of T-cell specific DNA-binding factors that interact with a 3'-silencer in the CD4+ T-cell gene Rpt-1. (1989) (3)
- Secretory expression of biologically active human Herpes virus interleukin-10 analogues in Escherichia coli via a modified Sec-dependent transporter construct (2013) (3)
- Identification of phosphate-regulated genes by differential expression in the UV-irradiated host system. (1999) (3)
- DNA Vaccines Free from Mobile DNA (2013) (2)
- Enhancing B-Cell Epitope Predictions by Integrating Protein Sequence and Structural Bioinformatics (2014) (2)
- Mouse spleen and IgD-secreting plasmacytomas contain multiple IgD delta chain RNAs. (1982) (2)
- Distance from a promoter mutation to an RNA synthesis startpoint on bacteriophage lambda DNA. (1972) (2)
- Rapid Bioprocess Culture Characterization (2015) (1)
- Comparative Optical Mapping: A New Approach for Microbial Comparative Genomics (2010) (1)
- Validating NGS-Based Genetic Tests (2015) (1)
- ResearchReduced evolvability of Escherichia coli MDS 42 , an IS-less cellular chassis for molecular and synthetic biology applications (2015) (1)
- Some Considerations Regarding the Structure and Function of Promoter-Operator Regions (1973) (1)
- GENOMIC CLONES FROM UNFRACTIONATED DNA (1979) (1)
- Sequence of lambda ric5b. (1982) (1)
- An efficient method for scoring base pair interactions. (1984) (1)
- AR TICLE The Complete Genome Sequence of Escherichia coli K-12 (2013) (0)
- Bacterial Insertion Sequence Mobilization and Transfer to Plasmids: A Common Source of Cloning Artifacts (2002) (0)
- Discovering Causal Disease Genes with NGS: Software Pipeline for Gene Candidate Identification (2014) (0)
- Micro-organismes a regulation d'oxygene (2006) (0)
- Plasmid DNA PREPARATIONS AND METHODS FOR THE MANUFACTURE OF SAME (2007) (0)
- Construction of coliphage lambda charon vectors with BamH1 cloning sites. 1980. (1992) (0)
- ORGANIZATION OF SEQUENCES AT LAMBDOID BACTERIOPHAGE ORIGINS OF REPLICATION (1980) (0)
- The Typhoid Epidemic in Konigsfelden in the Summer of 1926. (0)
- Genetic aspects of IgD expression: I. Analysis of the Cmu-C delta complex in committed and uncommitted DNA. (1982) (0)
- Nucleic Acids Research (0)
- Cloned delta chain cdna. (1980) (0)
- Secondary dna structures of murine immunoglobulin sequences in the cnu-cdelta gene complex. Abstr. (1982) (0)
- Conditional Lethal Amber Mutations in Essential Escherichia coli Genes (2004) (0)
- The human immunoglobulin C mu-C delta locus: regulation of mu and delta RNA expression during B cell development. (1989) (0)
- Analysis of the Structure and Function of Immunectin (1988) (0)
- Analogue of aspartate and glutamate active at synapses are attractants forEscherichia coli (1995) (0)
- Compositions and methods of amino acid biosynthesis (2009) (0)
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