Frederick R. Blattner

Frederick R. Blattner's AcademicInfluence.com Rankings

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Computer Science

Frederick R. Blattner's Degrees

PhD Computer Science Stanford University
Masters Computer Science Stanford University
Bachelors Mathematics University of California, Berkeley

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Frederick R. Blattner's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

The complete genome sequence of Escherichia coli K-12. (1997) (7569)
Mauve: multiple alignment of conserved genomic sequence with rearrangements. (2004) (3624)
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7 (2001) (2049)
Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli (2002) (1482)
On Differential Variability of Expression Ratios: Improving Statistical Inference about Gene Expression Changes from Microarray Data (2001) (805)
Charon phages: safer derivatives of bacteriophage lambda for DNA cloning. (1977) (706)
A large-conductance mechanosensitive channel in E. coli encoded by mscL alone (1994) (699)
Emergent Properties of Reduced-Genome Escherichia coli (2006) (649)
Genome-wide expression profiling in Escherichia coli K-12. (1999) (617)
Functional Genomics: Expression Analysis ofEscherichia coli Growing on Minimal and Rich Media (1999) (608)
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005 (2006) (605)
Genome Sequence of Yersinia pestis KIM (2002) (522)
Molecular Evolution of a Pathogenicity Island from Enterohemorrhagic Escherichia coli O157:H7 (1998) (457)
Complete Genome Sequence and Comparative Genomics of Shigella flexneri Serotype 2a Strain 2457T (2003) (410)
RNA expression analysis using a 30 base pair resolution Escherichia coli genome array (2000) (383)
Sequence of Shiga Toxin 2 Phage 933W fromEscherichia coli O157:H7: Shiga Toxin as a Phage Late-Gene Product (1999) (375)
The Complete Genome Sequence of Escherichia coli DH10B: Insights into the Biology of a Laboratory Workhorse (2008) (369)
Comparative Genomics of Salmonellaenterica Serovar Typhi Strains Ty2 and CT18 (2003) (365)
Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale (2006) (365)
In silico design and adaptive evolution of Escherichia coli for production of lactic acid. (2005) (361)
Functional Rice Centromeres Are Marked by a Satellite Repeat and a Centromere-Specific Retrotransposon Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.003079. (2002) (353)
Transcription Profiling of the Stringent Response in Escherichia coli (2007) (351)
Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes (1993) (341)
Structural and functional studies of the early T lymphocyte activation 1 (Eta-1) gene. Definition of a novel T cell-dependent response associated with genetic resistance to bacterial infection (1989) (318)
Engineering a reduced Escherichia coli genome. (2002) (276)
Genome-Wide Expression Analysis Indicates that FNR of Escherichia coli K-12 Regulates a Large Number of Genes of Unknown Function (2005) (274)
IscR‐dependent gene expression links iron‐sulphur cluster assembly to the control of O2‐regulated genes in Escherichia coli (2006) (263)
Markerless gene replacement in Escherichia coli stimulated by a double-strand break in the chromosome. (1999) (257)
Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes. (1992) (245)
Genome of Bacteriophage P1 (2004) (241)
High-Density Microarray-Mediated Gene Expression Profiling of Escherichia coli (2001) (236)
Global regulation of gene expression in Escherichia coli (1993) (228)
Iron acquisition in plague: modular logic in enzymatic biogenesis of yersiniabactin by Yersinia pestis. (1998) (219)
DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication. (1993) (218)
Versatile insertion plasmids for targeted genome manipulations in bacteria: isolation, deletion, and rescue of the pathogenicity island LEE of the Escherichia coli O157:H7 genome (1997) (216)
Cloning human fetal gamma globin and mouse alpha-type globin DNA: preparation and screening of shotgun collections. (1978) (211)
Complete DNA Sequence and Analysis of the Large Virulence Plasmid of Shigella flexneri (2001) (208)
Global Transcriptional Programs Reveal a Carbon Source Foraging Strategy by Escherichia coli*♦ (2005) (204)
Identification and Characterization of lpfABCC′DE, a Fimbrial Operon of Enterohemorrhagic Escherichia coli O157:H7 (2002) (194)
Systematic Mutagenesis of the Escherichia coli Genome (2004) (194)
Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli. (2003) (184)
ASAP, a systematic annotation package for community analysis of genomes (2003) (183)
A new human immunoglobulin VH family preferentially rearranged in immature B-cell tumours (1988) (172)
Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. (1995) (171)
Direct evidence for DNA bending at the lambda replication origin. (1987) (169)
Characterization of twenty-six new heat shock genes of Escherichia coli (1993) (165)
New map of bacteriophage lambda DNA (1980) (164)
The Export of Coat Protein from Enteroaggregative Escherichia coli by a Specific ATP-binding Cassette Transporter System* (2003) (164)
Sequence analysis of four new heat-shock genes constituting the hslTS/ibpAB and hslVU operons in Escherichia coli. (1993) (159)
Construction of coliphage lambda Charon vectors with BamHI cloning sites. (1980) (158)
DNA Sequencing and Analysis of the Low-Ca2+-Response Plasmid pCD1 of Yersinia pestis KIM5 (1998) (157)
Lambda Charon vectors (Ch32, 33, 34 and 35) adapted for DNA cloning in recombination-deficient hosts. (1983) (156)
Analysis of the boundaries of Salmonella pathogenicity island 2 and the corresponding chromosomal region of Escherichia coli K-12 (1997) (140)
Mapping of heavy chain genes for mouse immunoglobulins M and D. (1980) (139)
Complete DNA Sequence and Detailed Analysis of the Yersinia pestis KIM5 Plasmid Encoding Murine Toxin and Capsular Antigen (1998) (138)
The molecular biology of immunoglobulin D (1984) (130)
Charons 36 to 40: multi enzyme, high capacity, recombination deficient replacement vectors with polylinkers and polystuffers. (1987) (125)
Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. (1993) (124)
Regulatory network of Escherichia coli: consistency between literature knowledge and microarray profiles. (2003) (121)
Hybridization of labeled RNA to DNA in agarose gels. (1975) (117)
Structure of genes for membrane and secreted murine IgD heavy chains (1982) (115)
Metabolic engineering of a reduced-genome strain of Escherichia coli for L-threonine production (2009) (113)
SspA is required for acid resistance in stationary phase by downregulation of H‐NS in Escherichia coli (2005) (111)
Sequence-induced DNA curvature at the bacteriophage λ origin of replication (1985) (111)
Deletions and insertions in the immunity region of coliphage lambda: revised measurement of the promoter-startpoint distance. (1974) (111)
Recombination between higher plant DNA and the Ti plasmid of Agrobacterium tumefaciens. (1980) (109)
Genome Sequence of the Plant-Pathogenic Bacterium Dickeya dadantii 3937 (2011) (109)
Low-mutation-rate, reduced-genome Escherichia coli: an improved host for faithful maintenance of engineered genetic constructs (2012) (108)
Characterization of Cah, a calcium‐binding and heat‐extractable autotransporter protein of enterohaemorrhagic Escherichia coli (2002) (107)
Strains of Escherichia coli O157:H7 Differ Primarily by Insertions or Deletions, Not Single-Nucleotide Polymorphisms (2002) (104)
Reduced evolvability of Escherichia coli MDS42, an IS-less cellular chassis for molecular and synthetic biology applications (2010) (102)
Construction and characterization of the hybrid bacteriophage lambda Charon vectors for DNA cloning (1979) (101)
Initiation protein induced helix destabilization at the λ origin: A prepriming step in DNA replication (1988) (100)
Genome-Scale Analysis of the Uses of the Escherichia coli Genome: Model-Driven Analysis of Heterogeneous Data Sets (2003) (98)
Mouse immunoglobulin D: messenger RNA and genomic DNA sequences. (1980) (97)
Human heavy-chain variable region gene family nonrandomly rearranged in familial chronic lymphocytic leukemia. (1987) (93)
A Genomic Sample Sequence of the Entomopathogenic Bacterium Photorhabdus luminescens W14: Potential Implications for Virulence (2000) (93)
Uropathogenic Escherichia coli use d‐serine deaminase to modulate infection of the murine urinary tract (2003) (90)
RNA Synthesis Startpoints in Bacteriophage λ: Are the Promoter and Operator Transcribed? (1972) (90)
Genomic Interspecies Microarray Hybridization: Rapid Discovery of Three Thousand Genes in the Maize Endophyte,Klebsiella pneumoniae 342, by Microarray Hybridization with Escherichia coli K-12 Open Reading Frames (2001) (90)
Shotgun optical maps of the whole Escherichia coli O157:H7 genome. (2001) (90)
Physical structure of the replication origin of bacteriophage lambda. (1977) (88)
Sequence of the cloned gene for the constant region of murine gamma 2b immunoglobulin heavy chain. (1979) (85)
Mouse IgA heavy chain gene sequence: implications for evolution of immunoglobulin hinge axons. (1981) (83)
Global Transcriptional Effects of a Suppressor tRNA and the Inactivation of the Regulator frmR (2004) (81)
Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes. (1993) (78)
Predicting bacterial transcription units using sequence and expression data (2003) (74)
Human immunoglobulin D: genomic sequence of the delta heavy chain. (1985) (72)
A Whole-Genome Shotgun Optical Map of Yersinia pestis Strain KIM (2002) (72)
Single-Molecule Approach to Bacterial Genomic Comparisons via Optical Mapping (2004) (70)
Rapid nucleotide separation by chromatography on cation-exchange columns (1967) (70)
Restriction maps for twenty-one Charon vector phages (1980) (70)
Unusual sequences in the murine immunoglobulin μ–δ heavy-chain region (1983) (70)
Recombinant protein production in an Escherichia coli reduced genome strain. (2007) (68)
RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12 (2000) (68)
Indispensability of Horizontally Transferred Genes and Its Impact on Bacterial Genome Streamlining. (2016) (65)
Simultaneous expression of immunoglobulin mu and delta heavy chains by a cloned B-cell lymphoma: a single copy of the VH gene is shared by two adjacent CH genes. (1982) (62)
Conditional Lethal Amber Mutations in Essential Escherichia coli Genes (2004) (57)
J genes for heavy chain immunoglobulins of mouse. (1980) (55)
Structural analysis of the murine IgG3 constant region gene. (1984) (55)
APPENDIX I A Molecular Map of Coliphage Lambda (1983) (53)
Binding and bending of the lambda replication origin by the phage O protein. (1985) (53)
Mouse immunoglobulin D: construction and characterization of a cloned delta chain cDNA. (1980) (52)
Complete Genome Sequence and Comparative Genomics of Shigella flexneri Serotype 2 a Strain 2457 T † (2003) (50)
Immunoglobulin D switching can occur through homologous recombination in human B cells (1990) (49)
Structure of the constant and 3' untranslated regions of the murine gamma 2b heavy chain messenger RNA. (1979) (48)
Distance from a Promoter Mutation to an RNA Synthesis Startpoint on Bacteriophage λ DNA (1972) (48)
Cloning human fetal gamma globin and mouse alpha-type globin DNA: characterization and partial sequencing. (1978) (47)
Dissection and comparative anatomy of the origins of replication of lambdoid phages. (1979) (46)
Least-squares method for restriction mapping. (1978) (46)
Identification and Characterization of a Novel Uropathogenic Escherichia coli-Associated Fimbrial Gene Cluster (2004) (45)
Urease of Enterohemorrhagic Escherichia coli: Evidence for Regulation by Fur and a trans-Acting Factor (2002) (45)
Bacteriophage recombineering in the lytic state using the lambda red recombinases (2012) (44)
Identification and characterization of Escherichia coli RS218-derived islands in the pathogenesis of E. coli meningitis. (2006) (44)
Genetic structure of the replication origin of bacteriophage lambda. (1977) (42)
erratum Genome sequence of enterohaemorrhagic Escherichia coli 0157:H7 (2001) (40)
Nucleotide sequence of the Q gene and the Q to S intergenic region of bacteriophage lambda. (1982) (38)
The human immunoglobulin Cμ–Cδlocus: complete nucleotide sequence and structural analysis (1989) (38)
Nucleotide Sequence Analysis of the Enteropathogenic Escherichia coli Adherence Factor Plasmid pMAR7 (2006) (37)
GRIL: genome rearrangement and inversion locator (2004) (37)
The repeat sequence of a hermit crab satellite deoxyribonucleic acid is (-T-A-G-G-)n-(-A-T-C-C-)n. (1974) (36)
Sequence of the gene for the constant region of the mu chain of Balb/c mouse immunoglobulin. (1981) (36)
Mapping using gene encyclopaedias (1987) (34)
Development of a Biofilm Production-Deficient Escherichia coli Strain as a Host for Biotechnological Applications (2006) (33)
APPENDIX II Complete Annotated Lambda Sequence (1983) (32)
Escherichia coli K1-Specific Bacteriophage CUS-3 Distribution and Function in Phase-Variable Capsular Polysialic Acid O Acetylation (2007) (31)
Systematic Mutagenesis of the Escherichia coli Genome (2004) (31)
Illegitimate recombination generates a class switch from C mu to C delta in an IgD-secreting plasmacytoma. (1984) (30)
Sequence of the promoter-operator proximal region of the major leftward RNA of bacteriophage lambda. (1975) (30)
Construction of chimeric phages and plasmids containing the origin of replication of bacteriophage lambda. (1977) (30)
Concerted evolution of the mouse immunoglobulin gamma chain genes. (1984) (30)
Genome sequencing on both strands: the Janus strategy. (1993) (28)
Expression of two recombinant chloramphenicol acetyltransferase variants in highly reduced genome Escherichia coli strains (2007) (26)
Enhancing the Translational Capacity of E. coli by Resolving the Codon Bias. (2018) (26)
Subdivision of the Escherichia coli K-12 genome for sequencing: manipulation and DNA sequence of transposable elements introducing unique restriction sites. (1998) (26)
Insertion of DNA carrying ribosomal protein genes of Escherichia coli into Charon vector phages. (1977) (24)
Identification and Characterization of lpfABCC DE , a Fimbrial Operon of Enterohemorrhagic Escherichia coli O 157 : H 7 (2002) (24)
Correlation of the genetic and physical maps in the central region of the bacteriophage Mu genome. (1980) (23)
Homologous recombination catalyzed by mammalian cell extracts in vitro. (1984) (22)
Initiation protein induced helix destabilization at the lambda origin: a prepriming step in DNA replication. (1988) (22)
Sequence organization of the origins of DNA replication in lambdoid coliphages. (1981) (20)
Formal description of a DNA oriented computer language (1982) (20)
Expression of ribosomal protein genes cloned in Charon vector phages and identification of their promoters. (1977) (20)
Sequence-induced DNA curvature at the bacteriophage lambda origin of replication. (1985) (20)
Ultrafast DNA recovery from agarose by centrifugation through a paper slurry. (1994) (20)
Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution (2006) (19)
Nucleotide sequence of the chi recombinational hot spot chi +D in bacteriophage lambda (1981) (19)
Polymorphic Amplified Typing Sequences Provide a Novel Approach to Escherichia coli O157:H7 Strain Typing (2002) (19)
Complete Genome Sequence and Comparative Genomics of Shigella flexneri Serotype 2a Strain 2457T (2003) (19)
DNA looping induced by bacteriophage λ O protein: Implications for formation of higher order structures at the gl origin of replication (1989) (19)
Organization of ribosomal protein genes in Escherichia coli. I. Physical structure of DNA from transducing lambda phages carrying genes from the aroE-str region. (1976) (19)
Neural network input representations that produce accurate consensus sequences from DNA fragment assemblies (1999) (18)
Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria (2007) (17)
Personal access to sequence databases on personal computers (1986) (17)
Analysis and Comparison of the Mouse and Human Immunoglobulin Heavy Chain JH–Cμ–Cδ Locus (1996) (17)
Mouse spleen and IgD-secreting plasmacytomas contain multiple IgD δ chain RNAs (1982) (17)
Q-mediated late gene transcription of bacteriophage lambda: RNA start point and RNase III processing sites in vivo. (1988) (16)
Metal-binding chimeric antibodies expressed in Escherichia coli. (1992) (15)
Replication of bacteriophage lambda DNA. Examination of variants containing double origins and observation of a bias in directionality. (1982) (14)
RNA synthesis startpoints in bacteriophage lambda: are the promoter and operator transcribed? (1972) (13)
Isolation and characterization of transducing phage coding for sigma subunit of Escherichia coli RNA polymerase. (1979) (13)
GENETIC ASPECTS OF IgD EXPRESSION: I. ANALYSIS OF THE CµCδ COMPLEX IN COMMITTED AND UNCOMMITTED DNA (1982) (13)
A new asset for pathogen informatics--the Enteropathogen Resource Integration Center (ERIC), an NIAID Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Disease. (2007) (12)
A computer package for DNA sequence analysis (1984) (12)
Rapid detection of antigen binding by antibody fragments expressed in the periplasm of Escherichia coli. (1991) (11)
Recombinant antibody-metallothionein: design and evaluation for radioimmunoimaging. (1992) (11)
Enhancing the translational capacity of E. coli by resolving the codon bias (2018) (11)
Improving the Quality of Automatic DNA Sequence Assembly Using Fluorescent Trace-Data Classifications (1996) (11)
Interpreting microarray expression data using text annotating the genes (2002) (10)
GETools: gene expression tool for analysis of transcriptome experiments in E. coli (2002) (10)
GENETIC ASPECTS OF IgD EXPRESSION: III. FUNCTIONAL IMPLICATIONS OF THE SEQUENCE AND ORGANIZATION OF THE Cδ GENE (1982) (10)
A Precision Method for Generation of Solvent Gradients. (1966) (8)
Biological frontiers. (1983) (8)
Periplasmic Delivery of Biologically Active Human Interleukin-10 in Escherichia coli via a Sec-Dependent Signal Peptide (2012) (7)
Mapping of Point Mutations on the Physical Map of Coliphage Lambda: Absence of Clustering for Odd-Numbered Exchanges (1974) (7)
Erratum: Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T (Infection and Immunity (2003) 71:5 (2775-2786)) (2003) (7)
Asymmetric effects of deletions and substitutions on high negative interference in coliphage lambda. (1982) (7)
The human immunoglobulin Cμ–Cδ locus: regulation of ,μ and δ RNA expression during B cell development (1989) (6)
Analysis and comparison of the mouse and human immunoglobulin heavy chain JH-Cmu-Cdelta locus. (1996) (6)
Increasing Consensus Accuracy in DNA Fragment Assemblies by Incorporating Fluorescent Trace Representations (1997) (5)
Simultaneous preparation of up to 768 single-stranded DNAs for use as templates in DNA sequencing (1991) (5)
Nucleotide Sequence Analysis of the Enteropathogenic Escherichia coli Adherence Factor Plasmid pMAR 7 ‡ (2006) (5)
The human immunoglobulin C mu-C delta locus: complete nucleotide sequence and structural analysis. (1989) (4)
Field inversion gel electrophoresis applied to the rapid, multi-enzyme restriction mapping of phage lambda clones. (1990) (4)
DNA looping induced by bacteriophage lambda O protein: implications for formation of higher order structures at the lambda origin of replication. (1989) (4)
GENETIC ASPECTS OF IgD EXPRESSION: II. MULTIPLE FORMS OF δ CHAIN mRNA IN NORMAL MOUSE SPLEEN, MOUSE B‐CELL LYMPHOMAS AND MOUSE AND HUMAN MYELOMAS * (1982) (4)
Unusual sequences in the murine immunoglobulin mu-delta heavy-chain region. (1983) (4)
Cloning and characterization of the Escherichia coli chromosomal region surrounding the dnaG gene, with a correlated physical and genetic map of dnaG generated via transposon Tn5 mutagenesis (2004) (3)
Definition of T-cell specific DNA-binding factors that interact with a 3'-silencer in the CD4+ T-cell gene Rpt-1. (1989) (3)
Secretory expression of biologically active human Herpes virus interleukin-10 analogues in Escherichia coli via a modified Sec-dependent transporter construct (2013) (3)
Identification of phosphate-regulated genes by differential expression in the UV-irradiated host system. (1999) (3)
DNA Vaccines Free from Mobile DNA (2013) (2)
Enhancing B-Cell Epitope Predictions by Integrating Protein Sequence and Structural Bioinformatics (2014) (2)
Mouse spleen and IgD-secreting plasmacytomas contain multiple IgD delta chain RNAs. (1982) (2)
Distance from a promoter mutation to an RNA synthesis startpoint on bacteriophage lambda DNA. (1972) (2)
Rapid Bioprocess Culture Characterization (2015) (1)
Comparative Optical Mapping: A New Approach for Microbial Comparative Genomics (2010) (1)
Validating NGS-Based Genetic Tests (2015) (1)
ResearchReduced evolvability of Escherichia coli MDS 42 , an IS-less cellular chassis for molecular and synthetic biology applications (2015) (1)
Some Considerations Regarding the Structure and Function of Promoter-Operator Regions (1973) (1)
GENOMIC CLONES FROM UNFRACTIONATED DNA (1979) (1)
Sequence of lambda ric5b. (1982) (1)
An efficient method for scoring base pair interactions. (1984) (1)
AR TICLE The Complete Genome Sequence of Escherichia coli K-12 (2013) (0)
Bacterial Insertion Sequence Mobilization and Transfer to Plasmids: A Common Source of Cloning Artifacts (2002) (0)
Discovering Causal Disease Genes with NGS: Software Pipeline for Gene Candidate Identification (2014) (0)
Micro-organismes a regulation d'oxygene (2006) (0)
Plasmid DNA PREPARATIONS AND METHODS FOR THE MANUFACTURE OF SAME (2007) (0)
Construction of coliphage lambda charon vectors with BamH1 cloning sites. 1980. (1992) (0)
ORGANIZATION OF SEQUENCES AT LAMBDOID BACTERIOPHAGE ORIGINS OF REPLICATION (1980) (0)
The Typhoid Epidemic in Konigsfelden in the Summer of 1926. (0)
Genetic aspects of IgD expression: I. Analysis of the Cmu-C delta complex in committed and uncommitted DNA. (1982) (0)
Nucleic Acids Research (0)
Cloned delta chain cdna. (1980) (0)
Secondary dna structures of murine immunoglobulin sequences in the cnu-cdelta gene complex. Abstr. (1982) (0)
Conditional Lethal Amber Mutations in Essential Escherichia coli Genes (2004) (0)
The human immunoglobulin C mu-C delta locus: regulation of mu and delta RNA expression during B cell development. (1989) (0)
Analysis of the Structure and Function of Immunectin (1988) (0)
Analogue of aspartate and glutamate active at synapses are attractants forEscherichia coli (1995) (0)
Compositions and methods of amino acid biosynthesis (2009) (0)

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