Fabio Rinaldi | Academic Influence

Q: What Schools Are Affiliated With Fabio Rinaldi

Fabio Rinaldi is affiliated with the following schools: University of Udine, University of Zurich

Why Is Fabio Rinaldi Influential?

According to Wikipedia, Fabio Rinaldi is a research scientist at the IDSIA, Switzerland. Until 2019 he was a researcher and group leader at the University of Zurich. He is also a group leader at the Swiss Institute of Bioinformatics , and a visiting scientist at the Center for Genomic Sciences , where he collaborates with the RegulonDB group.

(See a Problem?)

Fabio Rinaldi's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond (2015) (428)
Natural Language Processing of Clinical Notes on Chronic Diseases: Systematic Review (2019) (214)
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text (2011) (212)
The gene normalization task in BioCreative III (2011) (169)
BioCreative III interactive task: an overview (2011) (96)
FACILE: Description of the NE System Used for MUC-7 (1998) (93)
OntoGene in BioCreative II.5 (2010) (89)
Exploiting Paraphrases in a Question Answering System (2003) (88)
Overview of the interactive task in BioCreative V (2015) (83)
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus (2011) (81)
An environment for relation mining over richly annotated corpora: the case of GENIA (2006) (81)
OntoGene in BioCreative II (2007) (79)
Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach (2007) (78)
Cocaine addiction: from habits to stereotypical-repetitive behaviors and punding. (2008) (72)
Answering Questions in the Genomics Domain (2004) (59)
Mining relations in the GENIA corpus (2004) (54)
Attempto Controlled English: A Knowledge Representation Language Readable by Humans and Machines (2005) (53)
Entity recognition in the biomedical domain using a hybrid approach (2017) (40)
PHARMACOLOGIC STUDIES OF SOME NONHYDRAZINE MAO INHIBITORS (1963) (36)
Web Conversations About Complementary and Alternative Medicines and Cancer: Content and Sentiment Analysis (2016) (33)
A symbolic approach to automatic multiword term structuring (2005) (33)
Using ODIN for a PharmGKB revalidation experiment (2012) (33)
TX Task: Automatic Detection of Focus Organisms in Biomedical Publications (2009) (32)
Breaking the Deadlock (2003) (32)
UZurich in the BioNLP 2009 Shared Task (2009) (32)
The Generalized Upper Model (2005) (31)
FACILE: Classifying Texts Integrating Pattern Matching and Information Extraction (1999) (30)
Multilayer annotations in Parmenides (2003) (29)
BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language (2016) (29)
Relation mining experiments in the pharmacogenomics domain (2012) (29)
Detecting Protein-Protein Interactions in Biomedical Texts Using a Parser and Linguistic Resources (2009) (28)
Mathematical Modeling and Multi-Objective Optimization of a Mini-Channel Heat Exchanger Via Genetic Algorithm (2013) (28)
OntoGene web services for biomedical text mining (2014) (27)
Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview (2013) (27)
OGER++: hybrid multi-type entity recognition (2019) (25)
Flexible Text Classification for Financial Applications: The Facile System (2000) (24)
Using the OntoGene pipeline for the triage task of BioCreative 2012 (2013) (24)
Detection of interaction articles and experimental methods in biomedical literature (2011) (23)
Terminological resources for text mining over biomedical scientific literature (2011) (22)
ExtrAns: Extracting Answers from Technical Texts (2003) (22)
Ranking relations between diseases, drugs and genes for a curation task (2012) (22)
Terminology as knowledge in answer extraction (2002) (21)
Least inventory control of multi-storage systems with non-stochastic unknown inputs (1997) (21)
Towards Answer Extraction: An application to Technical Domains (2002) (21)
Question Answering in Terminology-Rich Technical Domains (2004) (20)
NLP for answer extraction in technical domains (2003) (19)
BioC interoperability track overview (2014) (18)
The value of necropsy reports for animal health surveillance (2018) (18)
Technical Terminology as a Critical Resource (2002) (17)
Complex Structuring of Term Variants for Question Answering (2003) (17)
Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12 (2014) (17)
ODIN: An Advanced Interface for the Curation of Biomedical Literature (2010) (15)
Using Existing Biomedical Resources to Detect and Ground Terms in Biomedical Literature (2009) (15)
BioC implementations in Go, Perl, Python and Ruby (2014) (14)
Ranking of CTD articles and interactions using the OntoGene pipeline (2012) (14)
Towards automatic detection of experimental methods from biomedical literature (2008) (14)
Coupling Information Extraction and Data Mining for Ontology Learning in PARMENIDES (2004) (14)
Track 4 Overview: Extraction of Causal Network Information in Biological Expression Language (BEL) (2015) (13)
A robust and hybrid deep-linguistic theory applied to large-scale parsing (2004) (12)
Constructing a Syndromic Terminology Resource for Veterinary Text Mining (2015) (12)
Answer Extraction in Technical Domains (2002) (11)
CONCERTO, An Environment for the 'Intelligent' Indexing, Querying and Retrieval of Digital Documents (1999) (11)
Mining of functional relations between genes and proteins over biomedical scientific literature using a deep-linguistic approach (2007) (11)
SST-BERT at SemEval-2020 Task 1: Semantic Shift Tracing by Clustering in BERT-based Embedding Spaces (2020) (11)
Anaphora Resolution in ExtrAns (2003) (11)
Pro3Gres Parser in the CoNLL Domain Adaptation Shared Task (2007) (11)
Parmenides: An Opportunity for ISO TC37 SC4? (2003) (10)
COVID-19 Twitter Monitor: Aggregating and Visualizing COVID-19 Related Trends in Social Media (2020) (10)
A new approach and gold standard toward author disambiguation in MEDLINE (2019) (10)
Annotating the Pandemic: Named Entity Recognition and Normalisation in COVID-19 Literature (2020) (10)
Author Name Disambiguation in MEDLINE Based on Journal Descriptors and Semantic Types (2016) (10)
An Incremental Model for the Coreference Resolution Task of BioNLP 2011 (2011) (10)
Integrated document and knowledge management for the knowledge-based enterprise (2000) (10)
The role of technical Terminology in Question Answering (2003) (10)
Dependency-Based Relation Mining for Biomedical Literature (2008) (9)
Relation Mining over a Corpus of Scientific Literature (2005) (9)
The Importance of How-Questions in Technical Domains (2004) (9)
Integrated text categorisation and Information extraction using pattern matching and linguistic processing (1997) (9)
OGER: OntoGene’s Entity Recogniser in the BeCalm TIPS Task (2017) (8)
Exploiting Technical Terminology for Knowledge Management (2004) (8)
CONCERTO, conceptual indexing, querying and retrieval of digital documents (1999) (8)
UZH@CRAFT-ST: a Sequence-labeling Approach to Concept Recognition (2019) (8)
Fast, deep-linguistic statistical minimalist dependency parsing (2004) (8)
Improving spaCy dependency annotation and PoS tagging web service using independent NER services (2019) (7)
Using a Hybrid Approach for Entity Recognition in the Biomedical Domain (2016) (7)
MultiGBS: A multi-layer graph approach to biomedical summarization (2020) (7)
Multilingual Semantic Resources and Parallel Corpora in the Biomedical Domain: the CLEF-ER Challenge (2013) (7)
Strategies towards digital and semi-automated curation in RegulonDB (2017) (6)
Ranking Interactions for a Curation Task (2011) (6)
ODIN: a customizable literature curation tool (2013) (6)
A Facility Location Model for Air Pollution Detection (2018) (6)
Fast, Deep-Linguistic Statistical Dependency Parsing (2004) (6)
Approaching SMM4H with Merged Models and Multi-task Learning (2019) (6)
The ontogene system: an advanced information extraction application for biological literature (2012) (6)
A Combined Resource of Biomedical Terminology and its Statistics (2015) (6)
Revisiting the decay of scientific email addresses (2019) (5)
Closing the Gap: Cognitively Adequate, Fast Broad-Coverage Grammatical Role Parsing (2005) (5)
OntoGene: CTD entity and action term recognition (2013) (5)
OntoGene at CALBC II and Some Thoughts on the Need of Document-Wide Harmonization (2011) (5)
Steps towards a GENIA dependency treebank (2004) (5)
Terminology expansion and re-lation identification between genes and path-ways (2004) (5)
Real-time geospatial surveillance of localized emotional stress responses to COVID-19: A proof of concept analysis (2021) (4)
Parallel sequence tagging for concept recognition (2020) (4)
Notes about the OntoGene Pipeline (2012) (4)
Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis (2017) (4)
Strategies towards digital and semi-automated curation in RegulonDB (2016) (4)
Enhancing Biomedical Relation Extraction with Transformer Models using Shortest Dependency Path Features and Triplet Information (2021) (4)
Cross-lingual Transfer-learning Approach to Negation Scope Resolution (2020) (4)
Towards mature use of semantic resources for biomedical analyses (2011) (3)
Using Large Biomedical Databases as Gold Annotations for Automatic Relation Extraction (2014) (3)
OntoGene (Team 65): preliminary analysis of participation in BioCreative III (2010) (3)
Proceedings of the Tenth International Workshop on Health Text Mining and Information Analysis (LOUHI 2019) (2019) (3)
Assisted curation of growth conditions that affect gene expression in E. coli K-12 (2013) (3)
Control policies for multi-inventory systems with uncertain demand and setups (2001) (3)
Natural language processing in Java: Applications in education and knowledge management (2000) (3)
The PsyMine Corpus - A Corpus annotated with Psychiatric Disorders and their Etiological Factors (2016) (3)
Ontogene Term and Relation Recognition for CDR (2015) (2)
Tools for Text Mining over Biomedical Literature (2006) (2)
Factors associated with cattle necropsy submissions in Switzerland, and their importance for surveillance. (2020) (2)
PubRunner : A light-weight framework for updating text mining results (2019) (2)
Proceedings of the 5th International Symposium on Semantic Mining in Biomedicine (SMBM 2012) (2012) (2)
Negation typology and general representation models for cross-lingual zero-shot negation scope resolution in Russian, French, and Spanish. (2021) (2)
OntoGene in CALBC (2010) (2)
Named Entity Extraction System and its Web extensions (1999) (2)
Change of Biomedical Domain Terminology Over Time (2012) (2)
The Gene Regulation Knowledge Commons: The action area of GREEKC. (2021) (2)
The importance of the formulation of a plaster containing salicylic acid in treatment of corns (1994) (2)
PyBioC: a python implementation of the BioC core (2013) (2)
The challenge of technical text (2002) (2)
Exploiting Language Resources for Semantic Web Annotations (2004) (2)
Learning adaptive representations for entity recognition in the biomedical domain (2021) (2)
UZH@SMM4H: System Descriptions (2018) (2)
An annotated dataset for extracting gene-melanoma relations from scientific literature (2022) (1)
Learning Preferences for Large Scale Multi-label Problems (2018) (1)
Approaching SMM4H with auto-regressive language models and back-translation (2021) (1)
Mining complex Drug/Gene/Disease relations (2011) (1)
An Approach towards Semi-automated Biomedical Literature Curation and Enrichment for a Major Biological Database (2015) (1)
Semi-Automated Semantic Annotation of the Biomedical Literature (2014) (1)
Steps Towards Semantically Annotated Language Resources (2004) (1)
Improving classification of low-resource COVID-19 literature by using Named Entity Recognition (2021) (1)
mattica@SMM4H’22: Leveraging sentiment for stance & premise joint learning (2022) (1)
The Role of MultiWord Terminology in Knowledge Management (2004) (1)
OntoGene web services for biomedical text mining (2014) (1)
Successful Installation of the First Dual ESP Completion System in Val D’Agri Field (2017) (1)
Proceedings of the 6th International Symposium on Semantic Mining in Biomedicine (SMBM 2014) (2014) (1)
Using syntax features and document discourse for relation extraction on PharmGKB and CTD (2012) (1)
Use of a proline-specific endopeptidase to reintroduce gluten in patients with non-coeliac gluten sensitivity: A randomized trial. (2022) (1)
Exploring the feature space of character-level embeddings (2020) (1)
Do nomadic lactobacilli fit as potential vaginal probiotics? The answer lies in a successful selective multi-step and scoring approach (2023) (1)
UZH in BioNLP 2013 (2013) (1)
Term Evolution: Use of Biomedical Terminologies (2012) (1)
Chapter 15 Question Answering in Terminology-rich Technical Domains (2004) (1)
Knowledge-Based Question Answering (2003) (1)
A data-driven approach to alternations based on protein-protein interactions (2011) (1)
Biocuration of microRNAs in idiopathic pulmonary fibrosis (2015) (1)
Support tools for literature-based information access in molecular biology (2009) (1)
Ranking relations between diseases, drugs and genes for a curation task (2012) (1)
NLP DI at NADI Shared Task Subtask-1: Sub-word Level Convolutional Neural Models and Pre-trained Binary Classifiers for Dialect Identification (2022) (1)
Year : 2005 Exploiting technical terminology for knowledge management (2018) (0)
Large-scale Information Extraction for Assisted Curation of the Biomedical Literature (2015) (0)
Lisen&Curate: A platform to facilitate knowledge tools for curation of regulation of transcription initiation in bacteria (2020) (0)
Exploiting BabelNet for Multilingual Biomedical Synonym Expansion (2013) (0)
Year : 2012 Using ODIN for a PharmGKB revalidation experiment (2017) (0)
Editor’s introduction to the special section on the 7th Biomedical Linked Annotation Hackathon (BLAH7) (2021) (0)
Extracción automática de respuestas para documentación técnica (2003) (0)
Year : 2004 Mining relations in the GENIA corpus (2018) (0)
Early Guessing for Dialect Identification (2022) (0)
Proceedings of the 5th International Symposium on Languages in Biology and Medicine, Tokyo, 12-13 December (2013) (0)
Year : 2003 Multilayer annotations in (2017) (0)
How preferred are preferred terms (2013) (0)
Retrospective analysis of 11 years of livestock necropsy data : evaluation for animal health surveillance (2017) (0)
Optimizing the Size of Subword Vocabularies in Dialect Classification (2023) (0)
Efficient and Accurate Entity Recognition for Biomedical Text (2017) (0)
The OntoGene literature mining web service (2013) (0)
Introduction to BLAH5 special issue: recent progress on interoperability of biomedical text mining (2019) (0)
OntoRest: Text Mining Web Services in BioC Format (2014) (0)
Using biomedical databases as knowledge sources for large-scale text mining (2012) (0)
Lisen&Curate: A platform to facilitate gathering textual evidence for curation of regulation of transcription initiation in bacteria. (2021) (0)
Natural Language Processing for Question Answering ( NLP 4 (2015) (0)
UZH in the BioNLP 2013 GENIA Shared Task (2013) (0)
OP-062: HYBRID TECHNIQUES FOR TREATMENT OF VARICOSE VEINS: COMBINED NEW AND CONVENTIONAL TECHNOLOGIES (2011) (0)
Reviewers, Volume 33 (1990) (0)
A 0D-3D approach for numerical analysis of waste to energy plants: a case study (2021) (0)
Learning adaptive representations for entity recognition in the biomedical domain (2021) (0)
Text Mining Technologies for Database Curation (2014) (0)
Entity recognition in the biomedical domain using a hybrid approach (2017) (0)
291 In vitro efficacy of a sunscreen (50+) and octatrienoic acid 0.1% in actinic keratosis and UVs damages (2021) (0)
361 Assessment of Nomadic and Niche-specialist Lactobacilli as Potential Vaginal Probiotics (2022) (0)
Editor’s introduction to the special issue of the 6th Biomedical Linked Annotation Hackathon (BLAH6) (2020) (0)
Effective Mining of Protein Interactions (2009) (0)
A new and integrative curation system for RegulonDB (2017) (0)
Photo-crosslinking of hyaluronic acid with low-level laser therapy device: a new combined and innovative approach. (2021) (0)
Detecting and grounding terms in biomedical literature (2010) (0)
Challenges and best practices for digital unstructured data enrichment in health research: a systematic narrative review (2022) (0)
374 Characterization of a class IIb gynecological medical device containing hyaluronic acid, beta-glucan, sericin and glycerophosphoinositol: mechanism of action and pilot clinical experience (case report) (2021) (0)
A multi-objective DIRECT algorithm for ship hull optimization (2017) (0)
731 Generation of a laser capture microdissection and RNAseq-based human anagen hair follicle transcriptome atlas (2022) (0)
Automated Detection of Adverse Drug Events from Older Patients' Electronic Medical Records Using Text Mining (2020) (0)
Automatic Detection of Adverse Drug Events in Geriatric Care: Study Proposal (2022) (0)
A New Practical Correlation to Predict Specific Productivity Index for Sihapas Formations in the Minas Field (1996) (0)
OntoPDF: using a text mining pipeline to generate enriched pdf versions of scientific papers (2018) (0)
Study on the use of genetic algorithms for paths optimization (2011) (0)
An annotated dataset for extracting gene-melanoma relations from scientific literature (2022) (0)
Information extraction from clinical notes: A systematic review for Chronic Diseases (Preprint) (2018) (0)
Year : 2002 Technical terminology as a critical resource (2018) (0)
Lichen Planopilaris: The first biopsy layer microbiota inspection (2021) (0)
Tools for detection of protein interactions in biomedical literature (2018) (0)
Parmenides (2005) (0)
Study on the use of neural networks in control systems (2011) (0)
551 Combining Laser Capture Microdissection and RNAseq Analysis to Generate a Human Anagen Hair Follicle Transcriptome Atlas (2022) (0)
Review panel members who reviewed manuscripts in 2008 for Expert Systems (2008) (0)
Leveraging Token-Based Concept Information and Data Augmentation in Few-Resource NER: ZuKyo-EN at the NTCIR-16 Real-MedNLP task (0)
Dependency parsing for interaction detection in pharmacogenomics (2012) (0)
Assisted editing in the biomedical domain: motivation and challenges. (2013) (0)

This paper list is powered by the following services:

Other Resources About Fabio Rinaldi

What Schools Are Affiliated With Fabio Rinaldi?

Fabio Rinaldi is affiliated with the following schools: