Fabio Rinaldi
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Most Influential Person Now
Research scientist at the University of Zurich
Why Is Fabio Rinaldi Influential?
(Suggest an Edit or Addition)According to Wikipedia, Fabio Rinaldi is a research scientist at the IDSIA, Switzerland. Until 2019 he was a researcher and group leader at the University of Zurich. He is also a group leader at the Swiss Institute of Bioinformatics , and a visiting scientist at the Center for Genomic Sciences , where he collaborates with the RegulonDB group.
Fabio Rinaldi's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond (2015) (428)
- Natural Language Processing of Clinical Notes on Chronic Diseases: Systematic Review (2019) (214)
- The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text (2011) (212)
- The gene normalization task in BioCreative III (2011) (169)
- BioCreative III interactive task: an overview (2011) (96)
- FACILE: Description of the NE System Used for MUC-7 (1998) (93)
- OntoGene in BioCreative II.5 (2010) (89)
- Exploiting Paraphrases in a Question Answering System (2003) (88)
- Overview of the interactive task in BioCreative V (2015) (83)
- Assessment of NER solutions against the first and second CALBC Silver Standard Corpus (2011) (81)
- An environment for relation mining over richly annotated corpora: the case of GENIA (2006) (81)
- OntoGene in BioCreative II (2007) (79)
- Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach (2007) (78)
- Cocaine addiction: from habits to stereotypical-repetitive behaviors and punding. (2008) (72)
- Answering Questions in the Genomics Domain (2004) (59)
- Mining relations in the GENIA corpus (2004) (54)
- Attempto Controlled English: A Knowledge Representation Language Readable by Humans and Machines (2005) (53)
- Entity recognition in the biomedical domain using a hybrid approach (2017) (40)
- PHARMACOLOGIC STUDIES OF SOME NONHYDRAZINE MAO INHIBITORS (1963) (36)
- Web Conversations About Complementary and Alternative Medicines and Cancer: Content and Sentiment Analysis (2016) (33)
- A symbolic approach to automatic multiword term structuring (2005) (33)
- Using ODIN for a PharmGKB revalidation experiment (2012) (33)
- TX Task: Automatic Detection of Focus Organisms in Biomedical Publications (2009) (32)
- Breaking the Deadlock (2003) (32)
- UZurich in the BioNLP 2009 Shared Task (2009) (32)
- The Generalized Upper Model (2005) (31)
- FACILE: Classifying Texts Integrating Pattern Matching and Information Extraction (1999) (30)
- Multilayer annotations in Parmenides (2003) (29)
- BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language (2016) (29)
- Relation mining experiments in the pharmacogenomics domain (2012) (29)
- Detecting Protein-Protein Interactions in Biomedical Texts Using a Parser and Linguistic Resources (2009) (28)
- Mathematical Modeling and Multi-Objective Optimization of a Mini-Channel Heat Exchanger Via Genetic Algorithm (2013) (28)
- OntoGene web services for biomedical text mining (2014) (27)
- Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview (2013) (27)
- OGER++: hybrid multi-type entity recognition (2019) (25)
- Flexible Text Classification for Financial Applications: The Facile System (2000) (24)
- Using the OntoGene pipeline for the triage task of BioCreative 2012 (2013) (24)
- Detection of interaction articles and experimental methods in biomedical literature (2011) (23)
- Terminological resources for text mining over biomedical scientific literature (2011) (22)
- ExtrAns: Extracting Answers from Technical Texts (2003) (22)
- Ranking relations between diseases, drugs and genes for a curation task (2012) (22)
- Terminology as knowledge in answer extraction (2002) (21)
- Least inventory control of multi-storage systems with non-stochastic unknown inputs (1997) (21)
- Towards Answer Extraction: An application to Technical Domains (2002) (21)
- Question Answering in Terminology-Rich Technical Domains (2004) (20)
- NLP for answer extraction in technical domains (2003) (19)
- BioC interoperability track overview (2014) (18)
- The value of necropsy reports for animal health surveillance (2018) (18)
- Technical Terminology as a Critical Resource (2002) (17)
- Complex Structuring of Term Variants for Question Answering (2003) (17)
- Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12 (2014) (17)
- ODIN: An Advanced Interface for the Curation of Biomedical Literature (2010) (15)
- Using Existing Biomedical Resources to Detect and Ground Terms in Biomedical Literature (2009) (15)
- BioC implementations in Go, Perl, Python and Ruby (2014) (14)
- Ranking of CTD articles and interactions using the OntoGene pipeline (2012) (14)
- Towards automatic detection of experimental methods from biomedical literature (2008) (14)
- Coupling Information Extraction and Data Mining for Ontology Learning in PARMENIDES (2004) (14)
- Track 4 Overview: Extraction of Causal Network Information in Biological Expression Language (BEL) (2015) (13)
- A robust and hybrid deep-linguistic theory applied to large-scale parsing (2004) (12)
- Constructing a Syndromic Terminology Resource for Veterinary Text Mining (2015) (12)
- Answer Extraction in Technical Domains (2002) (11)
- CONCERTO, An Environment for the 'Intelligent' Indexing, Querying and Retrieval of Digital Documents (1999) (11)
- Mining of functional relations between genes and proteins over biomedical scientific literature using a deep-linguistic approach (2007) (11)
- SST-BERT at SemEval-2020 Task 1: Semantic Shift Tracing by Clustering in BERT-based Embedding Spaces (2020) (11)
- Anaphora Resolution in ExtrAns (2003) (11)
- Pro3Gres Parser in the CoNLL Domain Adaptation Shared Task (2007) (11)
- Parmenides: An Opportunity for ISO TC37 SC4? (2003) (10)
- COVID-19 Twitter Monitor: Aggregating and Visualizing COVID-19 Related Trends in Social Media (2020) (10)
- A new approach and gold standard toward author disambiguation in MEDLINE (2019) (10)
- Annotating the Pandemic: Named Entity Recognition and Normalisation in COVID-19 Literature (2020) (10)
- Author Name Disambiguation in MEDLINE Based on Journal Descriptors and Semantic Types (2016) (10)
- An Incremental Model for the Coreference Resolution Task of BioNLP 2011 (2011) (10)
- Integrated document and knowledge management for the knowledge-based enterprise (2000) (10)
- The role of technical Terminology in Question Answering (2003) (10)
- Dependency-Based Relation Mining for Biomedical Literature (2008) (9)
- Relation Mining over a Corpus of Scientific Literature (2005) (9)
- The Importance of How-Questions in Technical Domains (2004) (9)
- Integrated text categorisation and Information extraction using pattern matching and linguistic processing (1997) (9)
- OGER: OntoGene’s Entity Recogniser in the BeCalm TIPS Task (2017) (8)
- Exploiting Technical Terminology for Knowledge Management (2004) (8)
- CONCERTO, conceptual indexing, querying and retrieval of digital documents (1999) (8)
- UZH@CRAFT-ST: a Sequence-labeling Approach to Concept Recognition (2019) (8)
- Fast, deep-linguistic statistical minimalist dependency parsing (2004) (8)
- Improving spaCy dependency annotation and PoS tagging web service using independent NER services (2019) (7)
- Using a Hybrid Approach for Entity Recognition in the Biomedical Domain (2016) (7)
- MultiGBS: A multi-layer graph approach to biomedical summarization (2020) (7)
- Multilingual Semantic Resources and Parallel Corpora in the Biomedical Domain: the CLEF-ER Challenge (2013) (7)
- Strategies towards digital and semi-automated curation in RegulonDB (2017) (6)
- Ranking Interactions for a Curation Task (2011) (6)
- ODIN: a customizable literature curation tool (2013) (6)
- A Facility Location Model for Air Pollution Detection (2018) (6)
- Fast, Deep-Linguistic Statistical Dependency Parsing (2004) (6)
- Approaching SMM4H with Merged Models and Multi-task Learning (2019) (6)
- The ontogene system: an advanced information extraction application for biological literature (2012) (6)
- A Combined Resource of Biomedical Terminology and its Statistics (2015) (6)
- Revisiting the decay of scientific email addresses (2019) (5)
- Closing the Gap: Cognitively Adequate, Fast Broad-Coverage Grammatical Role Parsing (2005) (5)
- OntoGene: CTD entity and action term recognition (2013) (5)
- OntoGene at CALBC II and Some Thoughts on the Need of Document-Wide Harmonization (2011) (5)
- Steps towards a GENIA dependency treebank (2004) (5)
- Terminology expansion and re-lation identification between genes and path-ways (2004) (5)
- Real-time geospatial surveillance of localized emotional stress responses to COVID-19: A proof of concept analysis (2021) (4)
- Parallel sequence tagging for concept recognition (2020) (4)
- Notes about the OntoGene Pipeline (2012) (4)
- Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis (2017) (4)
- Strategies towards digital and semi-automated curation in RegulonDB (2016) (4)
- Enhancing Biomedical Relation Extraction with Transformer Models using Shortest Dependency Path Features and Triplet Information (2021) (4)
- Cross-lingual Transfer-learning Approach to Negation Scope Resolution (2020) (4)
- Towards mature use of semantic resources for biomedical analyses (2011) (3)
- Using Large Biomedical Databases as Gold Annotations for Automatic Relation Extraction (2014) (3)
- OntoGene (Team 65): preliminary analysis of participation in BioCreative III (2010) (3)
- Proceedings of the Tenth International Workshop on Health Text Mining and Information Analysis (LOUHI 2019) (2019) (3)
- Assisted curation of growth conditions that affect gene expression in E. coli K-12 (2013) (3)
- Control policies for multi-inventory systems with uncertain demand and setups (2001) (3)
- Natural language processing in Java: Applications in education and knowledge management (2000) (3)
- The PsyMine Corpus - A Corpus annotated with Psychiatric Disorders and their Etiological Factors (2016) (3)
- Ontogene Term and Relation Recognition for CDR (2015) (2)
- Tools for Text Mining over Biomedical Literature (2006) (2)
- Factors associated with cattle necropsy submissions in Switzerland, and their importance for surveillance. (2020) (2)
- PubRunner : A light-weight framework for updating text mining results (2019) (2)
- Proceedings of the 5th International Symposium on Semantic Mining in Biomedicine (SMBM 2012) (2012) (2)
- Negation typology and general representation models for cross-lingual zero-shot negation scope resolution in Russian, French, and Spanish. (2021) (2)
- OntoGene in CALBC (2010) (2)
- Named Entity Extraction System and its Web extensions (1999) (2)
- Change of Biomedical Domain Terminology Over Time (2012) (2)
- The Gene Regulation Knowledge Commons: The action area of GREEKC. (2021) (2)
- The importance of the formulation of a plaster containing salicylic acid in treatment of corns (1994) (2)
- PyBioC: a python implementation of the BioC core (2013) (2)
- The challenge of technical text (2002) (2)
- Exploiting Language Resources for Semantic Web Annotations (2004) (2)
- Learning adaptive representations for entity recognition in the biomedical domain (2021) (2)
- UZH@SMM4H: System Descriptions (2018) (2)
- An annotated dataset for extracting gene-melanoma relations from scientific literature (2022) (1)
- Learning Preferences for Large Scale Multi-label Problems (2018) (1)
- Approaching SMM4H with auto-regressive language models and back-translation (2021) (1)
- Mining complex Drug/Gene/Disease relations (2011) (1)
- An Approach towards Semi-automated Biomedical Literature Curation and Enrichment for a Major Biological Database (2015) (1)
- Semi-Automated Semantic Annotation of the Biomedical Literature (2014) (1)
- Steps Towards Semantically Annotated Language Resources (2004) (1)
- Improving classification of low-resource COVID-19 literature by using Named Entity Recognition (2021) (1)
- mattica@SMM4H’22: Leveraging sentiment for stance & premise joint learning (2022) (1)
- The Role of MultiWord Terminology in Knowledge Management (2004) (1)
- OntoGene web services for biomedical text mining (2014) (1)
- Successful Installation of the First Dual ESP Completion System in Val D’Agri Field (2017) (1)
- Proceedings of the 6th International Symposium on Semantic Mining in Biomedicine (SMBM 2014) (2014) (1)
- Using syntax features and document discourse for relation extraction on PharmGKB and CTD (2012) (1)
- Use of a proline-specific endopeptidase to reintroduce gluten in patients with non-coeliac gluten sensitivity: A randomized trial. (2022) (1)
- Exploring the feature space of character-level embeddings (2020) (1)
- Do nomadic lactobacilli fit as potential vaginal probiotics? The answer lies in a successful selective multi-step and scoring approach (2023) (1)
- UZH in BioNLP 2013 (2013) (1)
- Term Evolution: Use of Biomedical Terminologies (2012) (1)
- Chapter 15 Question Answering in Terminology-rich Technical Domains (2004) (1)
- Knowledge-Based Question Answering (2003) (1)
- A data-driven approach to alternations based on protein-protein interactions (2011) (1)
- Biocuration of microRNAs in idiopathic pulmonary fibrosis (2015) (1)
- Support tools for literature-based information access in molecular biology (2009) (1)
- Ranking relations between diseases, drugs and genes for a curation task (2012) (1)
- NLP DI at NADI Shared Task Subtask-1: Sub-word Level Convolutional Neural Models and Pre-trained Binary Classifiers for Dialect Identification (2022) (1)
- Year : 2005 Exploiting technical terminology for knowledge management (2018) (0)
- Large-scale Information Extraction for Assisted Curation of the Biomedical Literature (2015) (0)
- Lisen&Curate: A platform to facilitate knowledge tools for curation of regulation of transcription initiation in bacteria (2020) (0)
- Exploiting BabelNet for Multilingual Biomedical Synonym Expansion (2013) (0)
- Year : 2012 Using ODIN for a PharmGKB revalidation experiment (2017) (0)
- Editor’s introduction to the special section on the 7th Biomedical Linked Annotation Hackathon (BLAH7) (2021) (0)
- Extracción automática de respuestas para documentación técnica (2003) (0)
- Year : 2004 Mining relations in the GENIA corpus (2018) (0)
- Early Guessing for Dialect Identification (2022) (0)
- Proceedings of the 5th International Symposium on Languages in Biology and Medicine, Tokyo, 12-13 December (2013) (0)
- Year : 2003 Multilayer annotations in (2017) (0)
- How preferred are preferred terms (2013) (0)
- Retrospective analysis of 11 years of livestock necropsy data : evaluation for animal health surveillance (2017) (0)
- Optimizing the Size of Subword Vocabularies in Dialect Classification (2023) (0)
- Efficient and Accurate Entity Recognition for Biomedical Text (2017) (0)
- The OntoGene literature mining web service (2013) (0)
- Introduction to BLAH5 special issue: recent progress on interoperability of biomedical text mining (2019) (0)
- OntoRest: Text Mining Web Services in BioC Format (2014) (0)
- Using biomedical databases as knowledge sources for large-scale text mining (2012) (0)
- Lisen&Curate: A platform to facilitate gathering textual evidence for curation of regulation of transcription initiation in bacteria. (2021) (0)
- Natural Language Processing for Question Answering ( NLP 4 (2015) (0)
- UZH in the BioNLP 2013 GENIA Shared Task (2013) (0)
- OP-062: HYBRID TECHNIQUES FOR TREATMENT OF VARICOSE VEINS: COMBINED NEW AND CONVENTIONAL TECHNOLOGIES (2011) (0)
- Reviewers, Volume 33 (1990) (0)
- A 0D-3D approach for numerical analysis of waste to energy plants: a case study (2021) (0)
- Learning adaptive representations for entity recognition in the biomedical domain (2021) (0)
- Text Mining Technologies for Database Curation (2014) (0)
- Entity recognition in the biomedical domain using a hybrid approach (2017) (0)
- 291 In vitro efficacy of a sunscreen (50+) and octatrienoic acid 0.1% in actinic keratosis and UVs damages (2021) (0)
- 361 Assessment of Nomadic and Niche-specialist Lactobacilli as Potential Vaginal Probiotics (2022) (0)
- Editor’s introduction to the special issue of the 6th Biomedical Linked Annotation Hackathon (BLAH6) (2020) (0)
- Effective Mining of Protein Interactions (2009) (0)
- A new and integrative curation system for RegulonDB (2017) (0)
- Photo-crosslinking of hyaluronic acid with low-level laser therapy device: a new combined and innovative approach. (2021) (0)
- Detecting and grounding terms in biomedical literature (2010) (0)
- Challenges and best practices for digital unstructured data enrichment in health research: a systematic narrative review (2022) (0)
- 374 Characterization of a class IIb gynecological medical device containing hyaluronic acid, beta-glucan, sericin and glycerophosphoinositol: mechanism of action and pilot clinical experience (case report) (2021) (0)
- A multi-objective DIRECT algorithm for ship hull optimization (2017) (0)
- 731 Generation of a laser capture microdissection and RNAseq-based human anagen hair follicle transcriptome atlas (2022) (0)
- Automated Detection of Adverse Drug Events from Older Patients' Electronic Medical Records Using Text Mining (2020) (0)
- Automatic Detection of Adverse Drug Events in Geriatric Care: Study Proposal (2022) (0)
- A New Practical Correlation to Predict Specific Productivity Index for Sihapas Formations in the Minas Field (1996) (0)
- OntoPDF: using a text mining pipeline to generate enriched pdf versions of scientific papers (2018) (0)
- Study on the use of genetic algorithms for paths optimization (2011) (0)
- An annotated dataset for extracting gene-melanoma relations from scientific literature (2022) (0)
- Information extraction from clinical notes: A systematic review for Chronic Diseases (Preprint) (2018) (0)
- Year : 2002 Technical terminology as a critical resource (2018) (0)
- Lichen Planopilaris: The first biopsy layer microbiota inspection (2021) (0)
- Tools for detection of protein interactions in biomedical literature (2018) (0)
- Parmenides (2005) (0)
- Study on the use of neural networks in control systems (2011) (0)
- 551 Combining Laser Capture Microdissection and RNAseq Analysis to Generate a Human Anagen Hair Follicle Transcriptome Atlas (2022) (0)
- Review panel members who reviewed manuscripts in 2008 for Expert Systems (2008) (0)
- Leveraging Token-Based Concept Information and Data Augmentation in Few-Resource NER: ZuKyo-EN at the NTCIR-16 Real-MedNLP task (0)
- Dependency parsing for interaction detection in pharmacogenomics (2012) (0)
- Assisted editing in the biomedical domain: motivation and challenges. (2013) (0)
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