Frank Møller Aarestrup | Academic Influence

Why Is Frank Møller Aarestrup Influential?

Frank Møller Aarestrup's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Identification of acquired antimicrobial resistance genes (2012) (3762)
In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing (2014) (2452)
Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria (2012) (1497)
ResFinder 4.0 for predictions of phenotypes from genotypes (2020) (953)
Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli (2014) (913)
Staphylococcus aureus CC398: Host Adaptation and Emergence of Methicillin Resistance in Livestock (2012) (782)
Quinolone and macrolide resistance in Campylobacter jejuni and C. coli: resistance mechanisms and trends in human isolates. (2001) (727)
Effect of Abolishment of the Use of Antimicrobial Agents for Growth Promotion on Occurrence of Antimicrobial Resistance in Fecal Enterococci from Food Animals in Denmark (2001) (608)
Global monitoring of Salmonella serovar distribution from the World Health Organization Global Foodborne Infections Network Country Data Bank: results of quality assured laboratories from 2001 to 2007. (2011) (582)
Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms (2014) (545)
Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data (2015) (542)
An outbreak of multidrug-resistant, quinolone-resistant Salmonella enterica serotype typhimurium DT104. (1999) (530)
Comparison of antimicrobial resistance phenotypes and resistance genes in Enterococcus faecalis and Enterococcus faecium from humans in the community, broilers, and pigs in Denmark. (2000) (470)
qnrD, a Novel Gene Conferring Transferable Quinolone Resistance in Salmonella enterica Serovar Kentucky and Bovismorbificans Strains of Human Origin (2008) (448)
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage (2019) (446)
Avoparcin used as a growth promoter is associated with the occurrence of vancomycin-resistant Enterococcus faecium on Danish poultry and pig farms. (1997) (408)
Detection of mcr-1 encoding plasmid-mediated colistin-resistant Escherichia coli isolates from human bloodstream infection and imported chicken meat, Denmark 2015. (2015) (377)
Veterinary drug usage and antimicrobial resistance in bacteria of animal origin. (2005) (368)
Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples (2013) (363)
beta-Lactamases among extended-spectrum beta-lactamase (ESBL)-resistant Salmonella from poultry, poultry products and human patients in The Netherlands. (2005) (357)
PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens (2017) (353)
The role of whole genome sequencing in antimicrobial susceptibility testing of bacteria: report from the EUCAST Subcommittee. (2017) (346)
Resistance in bacteria of the food chain: epidemiology and control strategies (2008) (342)
World Health Organization ranking of antimicrobials according to their importance in human medicine: A critical step for developing risk management strategies for the use of antimicrobials in food production animals. (2009) (342)
Use of antimicrobial growth promoters in food animals and Enterococcus faecium resistance to therapeutic antimicrobial drugs in Europe. (1999) (306)
Pigs as Source of Methicillin-Resistant Staphylococcus aureus CC398 Infections in Humans, Denmark (2008) (306)
Characterisation of integrons and antibiotic resistance genes in Danish multiresistant Salmonella enterica Typhimurium DT104. (1998) (298)
Occurrence of glycopeptide resistance among Enterococcus faecium isolates from conventional and ecological poultry farms. (1995) (294)
Population Genetics of Vibrio cholerae from Nepal in 2010: Evidence on the Origin of the Haitian Outbreak (2011) (293)
Rapid and precise alignment of raw reads against redundant databases with KMA (2018) (284)
Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing. (2013) (277)
PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data (2013) (274)
Presence of erm gene classes in gram-positive bacteria of animal and human origin in Denmark. (1999) (229)
International spread of an epidemic population of Salmonella enterica serotype Kentucky ST198 resistant to ciprofloxacin. (2011) (228)
Surveillance of antimicrobial resistance in bacteria isolated from food animals to antimicrobial growth promoters and related therapeutic agents in Denmark (1998) (227)
Salmonella Serovars from Humans and Other Sources in Thailand, 1993–2002 (2004) (225)
Spa type distribution in Staphylococcus aureus originating from pigs, cattle and poultry. (2010) (223)
Association between the consumption of antimicrobial agents in animal husbandry and the occurrence of resistant bacteria among food animals (1999) (222)
Antimicrobial susceptibility patterns of thermophilic Campylobacter spp. from humans, pigs, cattle, and broilers in Denmark (1997) (220)
The effects of antibiotic usage in food animals on the development of antimicrobial resistance of importance for humans in Campylobacter and Escherichia coli. (1999) (218)
Antimicrobial susceptibility of Staphylococcus aureus isolated from bovine mastitis in Europe and the United States. (2000) (217)
Evaluation of Whole Genome Sequencing for Outbreak Detection of Salmonella enterica (2014) (213)
Susceptibility of different bacterial species isolated from food animals to copper sulphate, zinc chloride and antimicrobial substances used for disinfection. (2004) (210)
tcrB, a Gene Conferring Transferable Copper Resistance in Enterococcus faecium: Occurrence, Transferability, and Linkage to Macrolide and Glycopeptide Resistance (2002) (206)
Antimicrobial resistance in bacteria of animal origin (2006) (205)
Benchmarking of Methods for Genomic Taxonomy (2014) (204)
Danish Integrated Antimicrobial Resistance Monitoring and Research Program (2007) (200)
Antimicrobial resistance of thermophilic Campylobacter. (2001) (195)
Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes (2012) (195)
Resistance to antimicrobial agents used for animal therapy in pathogenic‐, zoonotic‐ and indicator bacteria isolated from different food animals in Denmark: a baseline study for the Danish Integrated Antimicrobial Resistance Monitoring Programme (DANMAP) (1998) (194)
Is It Time To Change Fluoroquinolone Breakpoints for Salmonella spp.? (2003) (189)
The livestock reservoir for antimicrobial resistance: a personal view on changing patterns of risks, effects of interventions and the way forward (2015) (189)
Livestock Origin for a Human Pandemic Clone of Community-Associated Methicillin-Resistant Staphylococcus aureus (2013) (189)
Characterization of Glycopeptide-Resistant Enterococcus faecium (GRE) from Broilers and Pigs in Denmark: Genetic Evidence that Persistence of GRE in Pig Herds Is Associated with Coselection by Resistance to Macrolides (2000) (184)
Molecular Analysis of Tn1546 inEnterococcus faecium Isolated from Animals and Humans (1998) (181)
Glycopeptide susceptibility among Danish Enterococcus faecium and Enterococcus faecalis isolates of animal and human origin and PCR identification of genes within the VanA cluster (1996) (180)
Using Genomics to Track Global Antimicrobial Resistance (2019) (178)
Sustainable farming: Get pigs off antibiotics (2012) (177)
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries (2018) (173)
International collaborative study on the occurrence of plasmid-mediated quinolone resistance in Salmonella enterica and Escherichia coli isolated from animals, humans, food and the environment in 13 European countries. (2011) (172)
Diversity and evolution of blaZ from Staphylococcus aureus and coagulase-negative staphylococci. (2006) (171)
Quinolone-resistant Campylobacter Infections: Risk Factors and Clinical Consequences (2004) (171)
Comparison of enterococcal populations in animals, humans, and the environment--a European study. (2003) (170)
Antimicrobial resistance of zoonotic and commensal bacteria in Europe: the missing link between consumption and resistance in veterinary medicine. (2014) (170)
Associations between the use of antimicrobial agents for growth promotion and the occurrence of resistance among Enterococcus faecium from broilers and pigs in Denmark, Finland, and Norway. (2000) (169)
Prevalence of antimicrobial resistance among bacterial pathogens isolated from cattle in different European countries: 2002–2004 (2008) (167)
Heterogeneity among methicillin-resistant Staphylococcus aureus from Italian pig finishing holdings. (2010) (161)
Prevalence of beta-lactamases among ampicillin-resistant Escherichia coli and Salmonella isolated from food animals in Denmark. (2004) (159)
Selection and Persistence of CTX-M-Producing Escherichia coli in the Intestinal Flora of Pigs Treated with Amoxicillin, Ceftiofur, or Cefquinome (2008) (156)
A classification system for plasmids from enterococci and other Gram-positive bacteria. (2010) (154)
Changes in the use of antimicrobials and the effects on productivity of swine farms in Denmark. (2010) (152)
Detection of mobile genetic elements associated with antibiotic resistance in Salmonella enterica using a newly developed web tool: MobileElementFinder (2020) (150)
Antimicrobial susceptibility and presence of resistance genes in staphylococci from poultry. (2000) (148)
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage (2019) (148)
SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data (2018) (147)
International Spread of Multidrug-resistant Salmonella Schwarzengrund in Food Products (2007) (146)
Antimicrobial‐resistant faecal Escherichia coli in wild mammals in central Europe: multiresistant Escherichia coli producing extended‐spectrum beta‐lactamases in wild boars (2010) (144)
Glycopeptide resistance in Enterococcus faecium from broilers and pigs following discontinued use of avoparcin. (1999) (144)
Characterization of extended-spectrum β-lactamase (ESBL)-producing Escherichia coli obtained from Danish pigs, pig farmers and their families from farms with high or no consumption of third- or fourth-generation cephalosporins. (2014) (144)
Zinc resistance of Staphylococcus aureus of animal origin is strongly associated with methicillin resistance. (2011) (144)
Occurrence, selection and spread of resistance to antimicrobial agents used for growth promotion for food animals in Denmark: Chapter 1: Introduction (2000) (142)
Characterization of Salmonella enterica serovar typhimurium DT104 isolated from Denmark and comparison with isolates from Europe and the United States. (2000) (141)
Antimicrobial susceptibility and occurrence of resistance genes among Salmonella enterica serovar Weltevreden from different countries. (2003) (140)
Escherichia coli isolates from broiler chicken meat, broiler chickens, pork, and pigs share phylogroups and antimicrobial resistance with community-dwelling humans and patients with urinary tract infection. (2010) (140)
Cloning and Occurrence of czrC, a Gene Conferring Cadmium and Zinc Resistance in Methicillin-Resistant Staphylococcus aureus CC398 Isolates (2010) (139)
Diagnosis and Antimicrobial Susceptibility of Campylobacter species (2008) (137)
Broiler chickens, broiler chicken meat, pigs and pork as sources of ExPEC related virulence genes and resistance in Escherichia coli isolates from community-dwelling humans and UTI patients. (2010) (134)
Antimicrobial resistance in swine production (2008) (130)
Comparative Evaluation of the Antimicrobial Activity of Different Antimicrobial Peptides against a Range of Pathogenic Bacteria (2015) (129)
Monitoring SARS-CoV-2 Circulation and Diversity through Community Wastewater Sequencing, the Netherlands and Belgium (2020) (129)
Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition (2016) (129)
Association between the consumption of antimicrobial agents in animal husbandry and the occurrence of resistant bacteria among food animals. (1998) (128)
A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance (2016) (126)
Antimicrobial Resistance among Enterococci from Pigs in Three European Countries (2002) (125)
IS21-558 Insertion Sequences Are Involved in the Mobility of the Multiresistance Gene cfr (2006) (123)
Association between antimicrobial resistance in Escherichia coli isolates from food animals and blood stream isolates from humans in Europe: an ecological study. (2011) (122)
Transfer of antibiotic resistant bacteria from animals to man. (1999) (122)
Antimicrobial susceptibility and serovars of Salmonella from chickens and humans in Ibadan, Nigeria. (2010) (120)
Nonhuman Reservoirs of Enterococci (2002) (120)
Development of a miniaturised microarray-based assay for the rapid identification of antimicrobial resistance genes in Gram-negative bacteria. (2008) (119)
Prevalence and duration of intramammary infection in Danish heifers during the peripartum period. (1997) (119)
Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data. (2016) (118)
Megaphages infect Prevotella and variants are widespread in gut microbiomes (2018) (118)
Voluntary ban on cephalosporin use in Danish pig production has effectively reduced extended-spectrum cephalosporinase-producing Escherichia coli in slaughter pigs. (2013) (117)
Copper Resistance in Enterococcus faecium, Mediated by the tcrB Gene, Is Selected by Supplementation of Pig Feed with Copper Sulfate (2006) (116)
Antimicrobial Growth Promoter Ban and Resistance to Macrolides and Vancomycin in Enterococci from Pigs (2001) (115)
The attribution of human infections with antimicrobial resistant Salmonella bacteria in Denmark to sources of animal origin. (2007) (110)
Pheno- and genotyping of Staphylococcus epidermidis isolated from bovine milk and human skin. (2006) (110)
Prevalence of extended-spectrum cephalosporinase (ESC)-producing Escherichia coli in Danish slaughter pigs and retail meat identified by selective enrichment and association with cephalosporin usage. (2012) (107)
Detection of the satA gene and transferability of virginiamycin resistance in Enterococcus faecium from food-animals. (1998) (106)
Molecular Characterization and Antimicrobial Susceptibility of Salmonella Isolates from Infections in Humans in Henan Province, China (2008) (106)
Spontaneous nisin-resistant Listeria monocytogenes mutants with increased expression of a putative penicillin-binding protein and their sensitivity to various antibiotics. (2001) (105)
Molecular characterization and occurrence of extended-spectrum beta-lactamase resistance genes among Salmonella enterica serovar Corvallis from Thailand, Bulgaria, and Denmark. (2006) (104)
snpTree - a web-server to identify and construct SNP trees from whole genome sequence data (2012) (102)
Monitoring of antimicrobial resistance among food animals: principles and limitations. (2004) (102)
Integrating Genome-based Informatics to Modernize Global Disease Monitoring, Information Sharing, and Response (2012) (101)
Prevalence of coagulase gene polymorphism in Staphylococcus aureus isolates causing bovine mastitis. (1995) (100)
Epidemiology and ecology of enterococci, with special reference to antibiotic resistant strains, in animals, humans and the environment. Example of an ongoing project within the European research programme. (2000) (99)
Susceptibility of Escherichia coli and Enterococcus faecium isolated from pigs and broiler chickens to tetracycline degradation products and distribution of tetracycline resistance determinants in E. coli from food animals. (2003) (99)
Isolation of vancomycin resistant Enterococcus faecium from food. (1997) (98)
Geographical variation in the presence of genes encoding superantigenic exotoxins and beta-hemolysin among Staphylococcus aureus isolated from bovine mastitis in Europe and USA. (2002) (94)
Study of methicillin resistant Staphylococcus aureus (MRSA) in Danish pigs at slaughter and in imported retail meat reveals a novel MRSA type in slaughter pigs. (2012) (93)
Antimicrobial resistance among Pseudomonas spp. and the Bacillus cereus group isolated from Danish agricultural soil. (2001) (92)
Prevalence of quinolone resistance mechanisms and associations to minimum inhibitory concentrations in quinolone-resistant Escherichia coli isolated from humans and swine in Denmark. (2008) (89)
Minimum inhibitory concentrations for selected antimicrobial agents against organisms isolated from the mammary glands of dairy heifers in New Zealand and Denmark. (1998) (88)
Evaluation of phenotypic and genotypic methods for epidemiological typing of Staphylococcus aureus isolates from bovine mastitis in Denmark. (1995) (88)
Identification of Tn5397-like and Tn916-like transposons and diversity of the tetracycline resistance gene tet(M) in enterococci from humans, pigs and poultry. (2006) (88)
Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing (2017) (88)
Occurrence of integrons and antimicrobial resistance genes among Salmonella enterica from Brazil. (2006) (88)
Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104 (2016) (86)
Livestock-Associated Methicillin Resistant and Methicillin Susceptible Staphylococcus aureus Sequence Type (CC)1 in European Farmed Animals: High Genetic Relatedness of Isolates from Italian Cattle Herds and Humans (2015) (86)
Characterisation of streptomycin resistance determinants in Danish isolates of Salmonella Typhimurium. (2000) (85)
The effects of oral and intramuscular administration and dose escalation of enrofloxacin on the selection of quinolone resistance among Salmonella and coliforms in pigs. (2003) (85)
Antimicrobial-resistant Shigella infections from Iran: an overlooked problem? (2012) (84)
Consolidating and Exploring Antibiotic Resistance Gene Data Resources (2016) (83)
Genomic variation in Salmonella enterica core genes for epidemiological typing (2012) (82)
Trends in the resistance to antimicrobial agents of Streptococcus suis isolates from Denmark and Sweden. (1998) (82)
The Role of Outer Membrane Proteins and Lipopolysaccharides for the Sensitivity of Escherichia coli to Antimicrobial Peptides (2018) (81)
Using sewage for surveillance of antimicrobial resistance (2020) (80)
Occurrence of antimicrobial resistance among bacterial pathogens and indicator bacteria in pigs in different European countries from year 2002 – 2004: the ARBAO-II study (2008) (80)
The dynamics of Staphylococcus aureus intramammary infection in nine Danish dairy herds. (2000) (79)
In vitro susceptibility testing of fluoroquinolone activity against Salmonella: recent changes to CLSI standards. (2012) (79)
Genomic Signature of Multidrug-Resistant Salmonella enterica Serovar Typhi Isolates Related to a Massive Outbreak in Zambia between 2010 and 2012 (2014) (78)
Decreased susceptibility to zinc chloride is associated with methicillin resistant Staphylococcus aureus CC398 in Danish swine. (2010) (78)
Multidrug resistance among different serotypes of clinical Salmonella isolates in Taiwan. (2006) (78)
Occurrence of integrons and resistance genes among sulphonamide-resistant Shigella spp. from Brazil. (2005) (77)
A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds (2017) (77)
A Livestock-Associated, Multidrug-Resistant, Methicillin-Resistant Staphylococcus aureus Clonal Complex 97 Lineage Spreading in Dairy Cattle and Pigs in Italy (2015) (77)
Frequency of alpha- and beta-haemolysin in Staphylococcus aureus of bovine and human origin. A comparison between pheno- and genotype and variation in phenotypic expression. (1999) (77)
Relationship between Copper, Glycopeptide, and Macrolide Resistance among Enterococcus faecium Strains Isolated from Pigs in Denmark between 1997 and 2003 (2005) (76)
Association between phage types and antimicrobial resistance among bovine Staphylococcus aureus from 10 countries. (2003) (76)
Molecular Characterization and Antimicrobial Susceptibility Testing of Escherichia coli Isolates from Patients with Urinary Tract Infections in 20 Chinese Hospitals (2011) (76)
Emergence of Livestock-Associated Methicillin-Resistant Staphylococcus aureus Bloodstream Infections in Denmark (2017) (76)
Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance (2015) (75)
Characterization of aminoglycoside resistance genes and class 1 integrons in porcine and bovine gentamicin-resistant Escherichia coli. (2000) (74)
Development of a standardized susceptibility test for campylobacter with quality-control ranges for ciprofloxacin, doxycycline, erythromycin, gentamicin, and meropenem. (2004) (74)
Characterisation of recently emerged multiple antibiotic-resistant Salmonella enterica serovar typhimurium DT104 and other multiresistant phage types from Danish pig herds (1998) (72)
Macrolide Resistance in Campylobacter coli of Animal Origin in Denmark (2001) (72)
Diversity of the tetracycline resistance gene tet(M) and identification of Tn916- and Tn5801-like (Tn6014) transposons in Staphylococcus aureus from humans and animals. (2009) (72)
MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads (2017) (72)
Staphylococcal and other Bacterial Species Associated with Intramammary Infections in Danish Dairy Herds (1995) (71)
Antimicrobial resistance and molecular epidemiology of Salmonella Rissen from animals, food products, and patients in Thailand and Denmark. (2008) (71)
Serological characterization and antimicrobial susceptibility of Streptococcus suis isolates from diagnostic samples in Denmark during 1995 and 1996. (1998) (71)
Campylobacter concisus: an evaluation of certain phenotypic and genotypic characteristics. (2005) (70)
Antimicrobial susceptibility of Haemophilus parasuis and Histophilus somni from pigs and cattle in Denmark. (2004) (69)
Association between decreased susceptibility to a new antibiotic for treatment of human diseases, everninomicin (SCH 27899), and resistance to an antibiotic used for growth promotion in animals, avilamycin. (1998) (69)
Association between the use of avilamycin for growth promotion and the occurrence of resistance among Enterococcus faecium from broilers: epidemiological study and changes over time. (2000) (69)
Meta-analysis of proportion estimates of Extended-Spectrum-Beta-Lactamase-producing Enterobacteriaceae in East Africa hospitals (2016) (68)
Evaluation of Quinolones for Use in Detection of Determinants of Acquired Quinolone Resistance, Including the New Transmissible Resistance Mechanisms qnrA, qnrB, qnrS, and aac(6′)Ib-cr, in Escherichia coli and Salmonella enterica and Determinations of Wild-Type Distributions (2009) (68)
Emergence of methicillin resistance predates the clinical use of antibiotics (2022) (66)
Emergence of Multidrug-Resistant Salmonella Concord Infections in Europe and the United States in Children Adopted From Ethiopia, 2003–2007 (2009) (64)
Occurrence of satA and vgb Genes in Streptogramin-Resistant Enterococcus faecium Isolates of Animal and Human Origins in The Netherlands (1998) (63)
First description of an oxyimino-cephalosporin-resistant, ESBL-carrying Escherichia coli isolated from meat sold in Denmark. (2006) (63)
Nucleoside analogues are activated by bacterial deoxyribonucleoside kinases in a species-specific manner. (2007) (63)
Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand (2017) (63)
Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems? (2016) (62)
Characterization of antimicrobial resistance in Salmonella enterica food and animal isolates from Colombia: identification of a qnrB19-mediated quinolone resistance marker in two novel serovars. (2010) (62)
Correction: PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data (2013) (61)
Effect of tylosin used as a growth promoter on the occurrence of macrolide-resistant enterococci and staphylococci in pigs. (1998) (61)
Clonal diversity of Staphylococcus aureus originating from the small ruminants goats and sheep. (2012) (61)
Listeria monocytogenes in bovine mastitis. Possible implication for human health. (1996) (61)
Plasmid-mediated quinolone resistance determinant qnrS1 detected in Salmonella enterica serovar Corvallis strains isolated in Denmark and Thailand. (2007) (59)
WHO Global Salm-Surv External Quality Assurance System for Serotyping of Salmonella Isolates from 2000 to 2007 (2009) (59)
Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid (2017) (58)
Risk factors and epidemiology of the ten most common Salmonella serovars from patients in Thailand: 2002-2007. (2009) (58)
Drivers and Dynamics of Methicillin-Resistant Livestock-Associated Staphylococcus aureus CC398 in Pigs and Humans in Denmark (2018) (58)
Indications and patterns of therapeutic use of antimicrobial agents in the Danish pig production from 2002 to 2008. (2012) (57)
Characterization of vancomycin-resistant and vancomycin-susceptible Enterococcus faecium isolates from humans, chickens and pigs by RiboPrinting and pulsed-field gel electrophoresis. (2000) (57)
Prevalence and Characterization of Human Shigella Infections in Henan Province, China, in 2006 (2010) (56)
Distribution of enrofloxacin in intestinal tissue and contents of healthy pigs after oral and intramuscular administrations. (2002) (56)
Organic dairy farmers' decision making in the first 2 years after conversion in relation to mastitis treatments (2003) (55)
First description of meticillin-resistant Staphylococcus aureus (MRSA) CC30 and CC398 from swine in Portugal. (2009) (55)
Linkage of vat(E) and erm(B) in Streptogramin-Resistant Enterococcus faecium Isolates from Europe (2000) (55)
Human Deaths and Third-Generation Cephalosporin use in Poultry, Europe (2013) (54)
Characterization of Salmonella entericaSerovar Typhimurium DT104 Isolated from Denmark and Comparison with Isolates from Europe and the United States (2000) (54)
EmtA, a rRNA methyltransferase conferring high‐level evernimicin resistance (2001) (53)
Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation (2019) (53)
Quinolone resistance among Salmonella enterica from cattle, broilers, and swine in Denmark. (2000) (53)
Development of penicillin resistance among Staphylococcus aureus isolated from bovine mastitis in Denmark and other countries. (1998) (53)
Population Genetic Structure of Listeria monocytogenes Strains as Determined by Pulsed-Field Gel Electrophoresis and Multilocus Sequence Typing (2016) (53)
Molecular Characterization of Extended-Spectrum Cephalosporinase-Producing Salmonella enterica Serovar Choleraesuis Isolates from Patients in Thailand and Denmark (2009) (52)
Patterns of infections, aetiological agents and antimicrobial resistance at a tertiary care hospital in northern Tanzania (2017) (51)
An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes (2017) (51)
Ability of Staphylococcus aureus coagulase genotypes to resist neutrophil bactericidal activity and phagocytosis (1994) (50)
First description of blaCTX-M-1-carrying Escherichia coli isolates in Danish primary food production. (2006) (50)
International Spread of blaCMY-2-Mediated Cephalosporin Resistance in a Multiresistant Salmonella enterica Serovar Heidelberg Isolate Stemming from the Importation of a Boar by Denmark from Canada (2004) (49)
Quinolone-resistant Campylobacter Infections in Denmark: Risk Factors and Clinical Consequences 1 (2004) (49)
High throughput resistance profiling of Plasmodium falciparum infections based on custom dual indexing and Illumina next generation sequencing-technology (2017) (48)
Frequency of α‐ and β‐haemolysin in Staphylococcus aureus of bovine and human origin (1999) (47)
Streptogramin resistance among Enterococcus faecium isolated from production animals in Denmark in 1997. (2002) (47)
Presence of Variations in Ribosomal Protein L16 Corresponding to Susceptibility of Enterococci to Oligosaccharides (Avilamycin and Evernimicin) (2000) (46)
The Role of the st313-td Gene in Virulence of Salmonella Typhimurium ST313 (2014) (45)
Sharing Data for Global Infectious Disease Surveillance and Outbreak Detection. (2016) (44)
Prevalence and characterization of cephalosporin resistance in nonpathogenic Escherichia coli from food-producing animals slaughtered in Poland. (2012) (44)
Antimicrobial Drug Resistance of Salmonella Isolates from Meat and Humans, Denmark (2007) (43)
Identification and Antimicrobial Resistance of Bacteria Isolated from Probiotic Products Used in Shrimp Culture (2015) (43)
Danmap 2000 -consumption of Antimicrobial Agents and Occurrence of Antimicrobial Resistance in Bacteria from Food Animals, Foods and Humans in Denmark (2001) (43)
Danmap 2000 -consumption of Antimicrobial Agents and Occurrence of Antimicrobial Resistance in Bacteria from Food Animals, Foods and Humans in Denmark (2001) (43)
ResFinder – an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes (2022) (43)
Expansion of a Plasmid Classification System for Gram-Positive Bacteria and Determination of the Diversity of Plasmids in Staphylococcus aureus Strains of Human, Animal, and Food Origins (2012) (42)
Microbiologic and Clinical Features of Salmonella Species Isolated From Bacteremic Children in Eastern Democratic Republic of Congo (2010) (42)
The association between the use of antimicrobial growth promoters and development of resistance in pathogenic bacteria towards growth promoting and therapeutic antimicrobials (1998) (41)
The EcoKI Type I Restriction-Modification System in Escherichia coli Affects but Is Not an Absolute Barrier for Conjugation (2014) (41)
Priorities for antibiotic resistance surveillance in Europe. (2006) (40)
The antimicrobial resistome in relation to antimicrobial use and biosecurity in pig farming, a metagenome-wide association study in nine European countries (2019) (40)
Antimicrobial susceptibility and tetracycline resistance determinant genotyping of Gallibacterium anatis. (2011) (40)
Molecular characterization of Escherichia coli strains isolated from pigs with edema disease (1997) (40)
Characterization of Staphylococcus simulans strains isolated from cases of bovine mastitis. (1999) (40)
Shigella from humans in Thailand during 1993 to 2006: spatial-time trends in species and serotype distribution. (2008) (40)
The in vitro fitness cost of antimicrobial resistance in Escherichia coli varies with the growth conditions. (2009) (40)
First detection of plasmid-mediated quinolone resistance (qnrA and qnrS) in Escherichia coli strains isolated from humans in Scandinavia. (2007) (40)
Spread of Staphylococcus aureus resistant to penicillin and tetracycline within and between dairy herds (2002) (40)
Diversity and stability of plasmids from glycopeptide-resistant Enterococcus faecium (GRE) isolated from pigs in Denmark. (2005) (40)
Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods (2017) (39)
SCCmec Type IX Element in Methicillin Resistant Staphylococcus aureus spa Type t337 (CC9) Isolated from Pigs and Pork in Thailand (2012) (39)
The COMPARE Data Hubs (2019) (39)
Trends in antimicrobial susceptibility in relation to antimicrobial usage and presence of resistance genes in Staphylococcus hyicus isolated from exudative epidermitis in pigs. (2002) (39)
Evaluation of the surveillance program of Streptococcus agalactiae in Danish dairy herds. (2003) (37)
Genomics of an emerging clone of Salmonella serovar Typhimurium ST313 from Nigeria and the Democratic Republic of Congo. (2013) (37)
Evidence-based policy for controlling antimicrobial resistance in the food chain in Denmark (2014) (37)
Prevalence and antibiotic resistance of Salmonella isolated from a poultry farm and processing plant environment in the State of Kuwait. (2007) (36)
Farm dust resistomes and bacterial microbiomes in European poultry and pig farms. (2020) (36)
Characterization of Isolates of Salmonella enterica Serovar Stanley, a Serovar Endemic to Asia and Associated with Travel (2011) (36)
Evaluation of eight different cephalosporins for detection of cephalosporin resistance in Salmonella enterica and Escherichia coli. (2010) (34)
Resistance to penicillin of Staphylococcus aureus isolates from cows with high somatic cell counts in organic and conventional dairy herds in Denmark (2006) (34)
A Study of Phage- and Ribotype Patterns of Staphylococcus aureus Isolated from Bovine Mastitis in the Nordic Countries (1997) (34)
Characterization of Streptococcus suis serotype 7 isolates from diseased pigs in Denmark. (2004) (34)
Extremely Drug-Resistant Salmonella enterica Serovar Senftenberg Infections in Patients in Zambia (2012) (33)
Comparison of two agar dilution methods and three agar diffusion methods, including the Etest, for antibiotic susceptibility testing of thermophilic Campylobacter species. (1999) (33)
Setting a baseline for global urban virome surveillance in sewage (2020) (33)
Associations between antimicrobial use and the faecal resistome on broiler farms from nine European countries (2019) (33)
Analysis of associations between major histocompatibility complex (BoLA) class I haplotypes and subclinical mastitis of dairy cows. (1995) (33)
Results of Use of WHO Global Salm-Surv External Quality Assurance System for Antimicrobial Susceptibility Testing of Salmonella Isolates from 2000 to 2007 (2008) (32)
Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease (2017) (31)
Characterization of Salmonella Occurring at High Prevalence in a Population of the Land Iguana Conolophus subcristatus in Galápagos Islands, Ecuador (2011) (31)
Antimicrobial resistance in Salmonella spp. recovered from patients admitted to six different hospitals in Tehran, Iran from 2007 to 2008 (2012) (31)
Genotypic and phenotypic diversity of Streptococcus dysgalactiae strains isolated from clinical and subclinical cases of bovine mastitis. (1996) (31)
Occurrence and characterization of Salmonella Hiduddify from chickens and poultry meat in Nigeria. (2009) (31)
Dealing with antimicrobial resistance – the Danish experience (2000) (31)
WHO global salm-surv external quality assurance system (EQAS): an important step toward improving the quality of Salmonella serotyping and antimicrobial susceptibility testing worldwide. (2002) (31)
Using WGS to identify antibiotic resistance genes and predict antimicrobial resistance phenotypes in MDR Acinetobacter baumannii in Tanzania (2019) (31)
Transmission of Antibiotic Resistance from Food Animals to Humans (2008) (31)
Tetracycline consumption and occurrence of tetracycline resistance in Salmonella typhimurium phage types from Danish pigs. (2007) (30)
Towards a European health research and innovation cloud (HRIC) (2020) (29)
The effect of pH and storage on copper speciation and bacterial growth in complex growth media. (2009) (29)
Ceftriaxone use in a tertiary care hospital in Kilimanjaro, Tanzania: A need for a hospital antibiotic stewardship programme (2019) (29)
Reappearance of Salmonella serovar Choleraesuis var. Kunzendorf in Danish pig herds. (2015) (29)
Effects of the antimicrobial growth promoter tylosin on subclinical infection of pigs with Salmonella enterica serotype Typhimurium. (1999) (28)
Vancomycin-resistant Enterococcus faecalis isolates from a Danish patient and two healthy human volunteers are possibly related to isolates from imported turkey meat. (2008) (28)
Quantification of bioavailable chlortetracycline in pig feces using a bacterial whole-cell biosensor. (2002) (28)
Associations of Streptococcus suis serotype 2 ribotype profiles with clinical disease and antimicrobial resistance. (1999) (27)
Guidelines for antimicrobial use in swine. (2009) (27)
Antimicrobial susceptibility of Listeria monocytogenes from food products. (2007) (27)
Epidemiological aspects of group B streptococci of bovine and human origin (1996) (26)
Proficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated In Silico High-Throughput Sequencing Data Sets (2019) (26)
Comparative ribotyping of Staphylococcus intermedius isolated from members of the Canoidea gives possible evidence for host-specificity and co-evolution of bacteria and hosts. (2001) (26)
Antimicrobial Resistance in Staphylococci and Streptococci of Animal Origin (2019) (26)
Antimicrobial susceptibility testing of Mycoplasma hyosynoviae isolated from pigs during 1968 to 1971 and during 1995 and 1996. (1998) (26)
IS6100-mediated genetic rearrangement within the complex class 1 integron In104 of the Salmonella genomic island 1. (2010) (26)
Antimicrobial Resistance in Bacteria from Livestock and Companion Animals (2018) (25)
Genome-Wide High-Throughput Screening to Investigate Essential Genes Involved in Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Survival (2014) (25)
Phenotypic, proteomic, and genomic characterization of a putative ABC-transporter permease involved in Listeria monocytogenes biofilm formation. (2011) (25)
The need for a veterinary antibiotic policy. (1999) (25)
Plasmid-mediated quinolone resistance due to qnrB5 and qnrS1 genes in Salmonella enterica serovars Newport, Hadar and Saintpaul isolated from turkey meat in Denmark. (2008) (25)
Establishing streptomycin epidemiological cut-off values for Salmonella and Escherichia coli. (2012) (25)
Genomic Dissection of Travel-Associated Extended-Spectrum-Beta-Lactamase-Producing Salmonella enterica Serovar Typhi Isolates Originating from the Philippines: a One-Off Occurrence or a Threat to Effective Treatment of Typhoid Fever? (2014) (24)
Genome sequences of copper resistant and sensitive Enterococcus faecalis strains isolated from copper-fed pigs in Denmark (2015) (24)
Extended-Spectrum β-Lactamases, Food, and Cephalosporin Use in Food Animals (2007) (24)
Quality-control ranges for antimicrobial susceptibility testing by broth dilution of the Brachyspira hyodysenteriae type strain (ATCC 27164T). (2006) (23)
Prediction of Acquired Antimicrobial Resistance for Multiple Bacterial Species Using Neural Networks (2020) (23)
Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach (2019) (23)
The Lake Chad Basin, an Isolated and Persistent Reservoir of Vibrio cholerae O1: A Genomic Insight into the Outbreak in Cameroon, 2010 (2016) (23)
Experimental Infection of Pregnant Cows with Bacillus licheniformis Bacteria (1999) (22)
Biocide Susceptibility of Staphylococcus aureus CC398 and CC30 Isolates from Pigs and Identification of the Biocide Resistance Genes, qacG and qacC. (2015) (22)
Global Microbial Identifier (2017) (22)
Susceptibility testing of Actinobacillus pleuropneumoniae in Denmark. Evaluation of three different media of MIC-determinations and tablet diffusion tests. (1999) (21)
Lack of Staphylococcal Enterotoxin Production among Strains of Staphylococcus aureus from Bovine Mastitis in Denmark (1995) (20)
Description and determinants of the faecal resistome and microbiome of farmers and slaughterhouse workers: A metagenome-wide cross-sectional study. (2020) (20)
The Origin, Evolution, and Local and Global Dissemination of Antimicrobial Resistance (2019) (19)
Understanding and predicting ciprofloxacin minimum inhibitory concentration in Escherichia coli with machine learning (2019) (19)
Metagenomic analysis of viruses in toilet waste from long distance flights—A new procedure for global infectious disease surveillance (2019) (19)
Pandemics– One Health preparedness for the next (2021) (19)
Metagenomics analysis of bacteriophages and antimicrobial resistance from global urban sewage (2021) (18)
Surveillance of antimicrobial resistance in humans, food stuffs and livestock in Denmark. (1997) (18)
Design of a system for monitoring antimicrobial resistance in pathogenic, zoonotic and indicator bacteria from food animals. (1999) (18)
A metagenomic glimpse into the gut of wild and domestic animals: Quantification of antimicrobial resistance and more (2020) (18)
Listeria monocytogenes in bovine mastitis (1995) (18)
Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania (2018) (18)
Fatal Septicemia Linked to Transmission of MRSA Clonal Complex 398 in Hospital and Nursing Home, Denmark (2016) (18)
The gut microbiome but not the resistome is associated with urogenital schistosomiasis in preschool-aged children (2020) (17)
Adhesion of Escherichia coli under flow conditions reveals potential novel effects of FimH mutations (2016) (17)
Public Health Surveillance using Decentralized Technologies (2018) (17)
Incidence of High-Level Evernimicin Resistance in Enterococcus faecium among Food Animals and Humans (2002) (17)
In Silico Prediction of Human Pathogenicity in the γ-Proteobacteria (2010) (17)
Use of Antimicrobials in Food Animal Production (2007) (16)
Microbiota long-term dynamics and prediction of acute graft-versus-host disease in pediatric allogeneic stem cell transplantation (2021) (16)
Molecular epidemiology of virulence and antimicrobial resistance determinants in Klebsiella pneumoniae from hospitalised patients in Kilimanjaro, Tanzania (2018) (16)
Resistant Salmonella Virchow in Quail Products (2005) (16)
Comparative genomics of quinolone‐resistant and susceptible Campylobacter jejuni of poultry origin from major poultry producing European countries (GENCAMP) (2018) (16)
Harmonization of antimicrobial susceptibility testing among veterinary diagnostic laboratories in the five Nordic countries. (2003) (16)
Evaluation of ceftiofur and cefquinome for phenotypic detection of methicillin resistance in Staphylococcus aureus using disk diffusion testing and MIC-determinations. (2010) (16)
Predicting effects of changed antimicrobial usage on the abundance of antimicrobial resistance genes in finisher' gut microbiomes. (2019) (15)
Identification of a Pseudomonas aeruginosa co-producing NDM-1, VIM-5 and VIM-6 metallo-β-lactamases in Denmark using whole-genome sequencing. (2015) (15)
The association between measurements of antimicrobial use and resistance in the faeces microbiota of finisher batches (2017) (15)
Molecular characterisation of multidrug-resistant Salmonella enterica serovar Typhimurium isolates from Gomel region, Belarus. (2007) (15)
Prevalence and risk factors for CTX-M gram-negative bacteria in hospitalized patients at a tertiary care hospital in Kilimanjaro, Tanzania (2018) (15)
Salmonella enterica serovar Typhimurium in Mauritius linked to consumption of marlin mousse. (2009) (14)
Heterologous expression of glycopeptide resistance vanHAX gene clusters from soil bacteria in Enterococcus faecalis. (2006) (14)
Cross-Border Transmission of Salmonella Choleraesuis var. Kunzendorf in European Pigs and Wild Boar: Infection, Genetics, and Evolution (2019) (14)
Phage types and antimicrobial resistance among Danish bovine Staphylococcus aureus isolates since the 1950s. (2003) (14)
Ten years of antimicrobial susceptibility testing of Salmonella from Danish pig farms. (2008) (14)
Global epidemiology of non-typhoidal Salmonella infections in humans (2010) (14)
Prevalence and genomic analysis of ESBL-producing Escherichia coli in retail raw meats in Singapore. (2020) (14)
dfrA25, a novel trimethoprim resistance gene from Salmonella Agona isolated from a human urine sample in Brazil. (2006) (14)
Molecular Analysis of Tn 1546 in Enterococcus faecium Isolated from Animals and Humans (1998) (14)
Metagenomics-Based Approach to Source-Attribution of Antimicrobial Resistance Determinants – Identification of Reservoir Resistome Signatures (2021) (13)
Proficiency of WHO Global Foodborne Infections Network External Quality Assurance System Participants in Identification and Susceptibility Testing of Thermotolerant Campylobacter spp. from 2003 to 2012 (2018) (13)
Host Resistance, Genomics and Population Dynamics in a Salmonella Enteritidis and Phage System (2019) (13)
Epidemiology of Danish Aeromonas salmonicida subsp. salmonicida in Fish Farms Using Whole Genome Sequencing (2017) (13)
Economic evaluation of whole genome sequencing for pathogen identification and surveillance – results of case studies in Europe and the Americas 2016 to 2019 (2021) (13)
Data Science in Healthcare: Benefits, Challenges and Opportunities (2019) (13)
DANMAP 99-Consumption of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from food animals , food and humans in Denmark Statens Serum (2000) (12)
Occurrence of antimicrobial resistance among bacterial pathogens (2008) (12)
Antibiotic Use in Food-Animal Production in Denmark (2000) (12)
DANMAP 99-Consumption of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from food animals , food and humans in Denmark Statens Serum (2000) (12)
Genome Sequences of Three Highly Copper-Resistant Salmonella enterica subsp. I Serovar Typhimurium Strains Isolated from Pigs in Denmark (2014) (12)
Proof of concept: used malaria rapid diagnostic tests applied for parallel sequencing for surveillance of molecular markers of anti-malarial resistance in Bissau, Guinea-Bissau during 2014–2017 (2019) (12)
Occurence, selection and spread of resistance to antimicrobial agents used for growth promotion in Denmark (2000) (12)
Genome Sequences of Two Copper-Resistant Escherichia coli Strains Isolated from Copper-Fed Pigs (2014) (12)
Genomic evolution of antimicrobial resistance in Escherichia coli (2021) (11)
Antimicrobial susceptibilities, phage types, and molecular characterization of Salmonella enterica serovar Enteritidis from chickens and chicken meat in turkey. (2009) (11)
Rice protein concentrate as a fish meal substitute in Oreochromis niloticus: Effects on immune response, intestinal cytokines, Aeromonas veronii resistance, and gut microbiota composition. (2022) (11)
Hospital Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Tertiary Care Hospital in Moshi, Tanzania, as Determined by Whole Genome Sequencing (2018) (11)
Reply to “South Asia Instead of Nepal May Be the Origin of the Haitian Cholera Outbreak Strain” (2011) (11)
Agar Dilution and Disk Diffusion Susceptibility Testing of Campylobacter spp. (2007) (11)
Worldwide human mitochondrial haplogroup distribution from urban sewage (2019) (11)
The effect of avoparcin used as a feed additive on the occurrence of vancomycin resistant Enterococcus faecium in pig and poultry production (1995) (11)
Dissection of the antimicrobial and hemolytic activity of Cap18: Generation of Cap18 derivatives with enhanced specificity (2018) (11)
Secrets of the Hospital Underbelly: Patterns of Abundance of Antimicrobial Resistance Genes in Hospital Wastewater Vary by Specific Antimicrobial and Bacterial Family (2019) (11)
The rarely reported tet(31) tetracycline resistance determinant is common in Gallibacterium anatis. (2011) (11)
Staphylococcus aureus CC398: Host Adaptation and Emergence of Methicillin Resistance in Livestock (2013) (11)
Global Distribution of mcr Gene Variants in 214K Metagenomic Samples (2021) (10)
.Analysis of the contribution of bacteriophage ST64B to in vitro virulence traits of Salmonella enterica serovar Typhimurium. (2014) (10)
External quality assurance system for antibiotic resistance in bacteria of animal origin in Europe (ARBAO-II), 2003. (2006) (10)
Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance (2022) (10)
Extended-spectrum beta-lactamases, food, and cephalosporin use in food animals. (2007) (10)
Comment on: Causal regulations vs. political will: why human zoonotic infections increase despite precautionary bans on animal antibiotics. (2009) (10)
Erratum to ''Characterisation of integrons and antibiotic resistance genes in Danish multiresistant Salmonella enterica Typhimurium DT104'' [FEMS Microbiol. Lett. 157 (1997) 177–181] (1998) (10)
Effect of intervention on the occurrence of antimicrobial resistance. (2000) (9)
Characterisation of integrons and antibiotic resistance genes in Danish multiresistant Salmonella enterica Typhimurium DT104. (1998) (9)
Monitoring of Antimicrobial Resistance in Animals: Principles and Practices (2019) (9)
Audouin's gull, a potential vehicle of an extended spectrum β-lactamase producing Salmonella Agona. (2015) (9)
Library Preparation and Sequencing Platform Introduce Bias in Metagenomic-Based Characterizations of Microbiomes (2019) (9)
Salmonella enterica serovar Typhi H58 clone has been endemic in Zimbabwe from 2012 to 2019. (2020) (9)
Direct whole-genome sequencing of Plasmodium falciparum specimens from dried erythrocyte spots (2018) (9)
Epidemiological investigation of Salmonella enterica serovar Kedougou in Thailand. (2011) (9)
A Peek into the Plasmidome of Global Sewage (2021) (8)
Developing a framework to assess the costeffectiveness of COMPARE - a global platform for the exchange of sequence-based pathogen data. (2017) (8)
Reads2Type: a web application for rapid microbial taxonomy identification (2015) (8)
Association Between Production of Fibrinolysin and Virulence of Staphylococcus hyicus in Relation to Exudative Epidermitis in Pigs (1997) (8)
Investigating Salmonella Eko from Various Sources in Nigeria by Whole Genome Sequencing to Identify the Source of Human Infections (2016) (8)
The Role of the st 313-td Gene in Virulence of Salmonella Typhimurium ST 313 (2013) (8)
The pharmacodynamic effect of amoxicillin and danofloxacin against Salmonella typhimurium in an in-vitro pharmacodynamic model. (2000) (8)
Microbiota long-term dynamics and prediction of acute graft-versus-host disease in pediatric allogeneic stem cell transplantation (2021) (8)
Antimicrobial Susceptibility of Mycoplasma hyorhinis in a Liquid Medium Compared to a Disc Assay (1998) (8)
The proficiency test (pilot) report of the global microbial identifier (GMI) initiative, year 2014 (2016) (8)
Staphylococci and streptococci (2006) (8)
Clonal spread of tetracycline-resistant Salmonella typhimurium in Danish dairy herds (1997) (8)
Occurrence and characterization of Salmonella enterica subspecies enterica serovar 9,12:l,v:- strains from Bulgaria, Denmark, and the United States (2009) (8)
Abundance and diversity of the fecal resistome in slaughter pigs and broilers in nine European countries (2017) (7)
Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns (2021) (7)
Regulation of the erm(C) Gene in Staphylococci from Reservoir with Different Usage of Macrolides (2005) (7)
Validation of the register-based lifetime antimicrobial usage measurement for finisher batches based on comparison with recorded antimicrobial usage at farm level (2018) (6)
Improved Resistance Prediction in Mycobacterium tuberculosis by Better Handling of Insertions and Deletions, Premature Stop Codons, and Filtering of Non-informative Sites (2019) (6)
Observing bacterial activity interferometrically (2003) (6)
Identification of a Tn1546-Like (Type 2) Element in Vancomycin-Resistant Enterococcus faecium Isolated from Hospitalized Patients in Japan (2001) (6)
Oedema disease caused by O-rough Escherichia coli (1996) (5)
Predicting Antimicrobial Resistance Using Partial Genome Alignments (2021) (5)
Characterization of Staphylococcus aureus from bovine mastitis (1995) (5)
Spatio-temporal analysis of Salmonella surveillance data in Thailand (2013) (5)
PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest (2021) (5)
Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering (2020) (5)
The CGE Tool Box (2017) (5)
Livestock origin for a human pandemic clone of community- associated MRSA (2013) (5)
Antimicrobial resistance in hospital wastewater in Scotland: a cross-sectional metagenomics study (2019) (5)
Multiclonal human origin and global expansion of an endemic bacterial pathogen of livestock (2022) (5)
Long-Term Temporal Stability of the Resistome in Sewage from Copenhagen (2020) (5)
Antimicrobial susceptibility testing – clinical break points and epidemiological cut-off values (2007) (5)
One Day in Denmark: Nationwide point-prevalence survey of human bacterial isolates and comparison of classical and whole-genome sequence-based species identification methods (2022) (4)
Application of Next Generation Sequencing on Norovirus‐contaminated oyster samples (2022) (4)
Other Pathogens (2019) (4)
Comparative genomics of toxigenic and non-toxigenic Staphylococcus hyicus. (2016) (4)
Risk assessment of antimicrobial usage in Danish pig production on the human exposure to antimicrobial resistant bacteria from pork (2011) (4)
Author Correction: Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries (2018) (4)
Large scale automated phylogenomic analysis of bacterial isolates and the Evergreen Online platform (2020) (4)
One Day in Denmark: Comparison of Phenotypic and Genotypic Antimicrobial Susceptibility Testing in Bacterial Isolates From Clinical Settings (2022) (3)
Comment on: Gross national income and antibiotic resistance in invasive isolates: analysis of the top-ranked antibiotic-resistant bacteria on the 2017 WHO priority list. (2020) (3)
Development of a simplified on-farm animal health and welfare benchmarking tool for pig herds (2019) (3)
Risk Factors for Antimicrobial Resistance in Turkey Farms: A Cross-Sectional Study in Three European Countries (2021) (3)
Erratum to: Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease (2017) (3)
Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation (2019) (3)
Standard Sample Storage Conditions Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns (2021) (3)
The emergence of nalidixic acid resistant, multiresistant S. typhimurium DT104 in Denmark. An outbreak in humans traced back to pork (1999) (3)
Benchtop Whole-Genome Sequencing for Identification of Nosocomial Outbreaks in Tanzania (2016) (3)
Proof of concept: used malaria rapid diagnostic tests applied for parallel sequencing for surveillance of molecular markers of anti-malarial resistance in Bissau, Guinea-Bissau during 2014–2017 (2019) (3)
Correction: MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads (2017) (3)
Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes (2012) (3)
Arrangements of Mobile Genetic Elements among Virotype E Subpopulation of Escherichia coli Sequence Type 131 Strains with High Antimicrobial Resistance and Virulence Gene Content (2021) (3)
Evaluating the usefulness of next-generation sequencing for herb authentication (2021) (3)
Metagenomic DNA sequencing for semi-quantitative pathogen detection from urine: a prospective, laboratory-based, proof-of-concept study. (2022) (2)
SCCmec Type IX Element in Methicillin Resistant Staphylococcus aureus spa Type t337 (CC9) Isolated from Pigs and Pork in Thailand (2012) (2)
West Nile Virus spread in Europe - phylogeographic pattern analysis and key drivers (2022) (2)
Expansion of a Subset Within the C2 Subclade of Escherichia coli Sequence Type 131 (ST131) Is Driving the Increasing Rates of Aminoglycoside Resistance (2020) (2)
[Pasteurella multocida septicaemia and pneumonia after chemotherapy in a patient who had no known contact with animals]. (2014) (2)
FI: The Fecobiome Initiative (2021) (2)
Go COMPARE! “One serves all” next-generation sequencing framework (2017) (2)
Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples (2014) (2)
Member of expert working group on antibiotic resistance, convened by the European Parliament Scientific and Technical Options Assessment (STOA) Committee. Contributor to Antibiotic Resistance. (2006) (2)
Accelerating surveillance and research of antimicrobial resistance – an online repository for sharing of antimicrobial susceptibility data associated with whole-genome sequences (2020) (2)
A curated data resource of 214K metagenomes for characterization of the global antimicrobial resistome (2022) (2)
[Increasing transmission of antibiotic resistance from animals to humans]. (2011) (2)
Danish Integrated Antimirobial Resistance Monitoring and Research Programme (2007) (2)
Metagenomics-Based Proficiency Test of Smoked Salmon Spiked with a Mock Community (2020) (2)
A global phylogenomic and metabolic reconstruction of the large intestine bacterial community of domesticated cattle (2022) (2)
Specific gut microbiome members are associated with distinct immune markers in allogeneic hematopoietic stem cell transplantation (2019) (2)
Drivers and Dynamics of Methicillin-Resistant Livestock-Associated <named-content content-type='genus-species'>Staphylococcus aureus</named-content> CC398 in Pigs and Humans in Denmark (2018) (2)
A Danish Salmonella Bareilly outbreak investigated by the use of whole genome sequencing (2013) (2)
Faculty Opinions recommendation of Community-acquired MRSA and pig-farming. (2007) (2)
snpTree - a web-server to identify and construct SNP trees from whole genome sequence data (2012) (2)
Commentary: Benefits and risks of antimicrobial use in food-producing animals (2017) (2)
Global Food-source Identifier (GFI): Collaborative virtual research environment and shared data catalogue for the foodborne outbreak investigation international community (2021) (2)
WHO Global Salm-Surv external quality assurance system (EQAS) for antimicrobial susceptibility testing of Salmonella isolates, 2000-2007 (2008) (1)
Danish Whole-Genome-Sequenced Candida albicans and Candida glabrata Samples Fit into Globally Prevalent Clades (2021) (1)
Genomic variation in Salmonella enterica core genes for epidemiological typing (2012) (1)
International Collaborative study on the prevalence of plasmid mediated quinolone resistance (PMQR) in Salmonella and E. coli isolated from humans and animals in Europe (2010) (1)
Meta-analysis of proportion estimates of Extended-Spectrum-Beta-Lactamase-producing Enterobacteriaceae in East Africa hospitals (2016) (1)
Reads2Type: a web application for rapid microbial taxonomy identification (2015) (1)
Textbox 7.2 Whole genome sequence (WGS)-based prediction of antimicrobial resistance in clinical Escherichia coli from one day in Denmark (2018) (1)
WHO Global Foodborne Infections Network External Quality Assurance System (EQAS) for serotyping and antimicrobial susceptibility testing of Salmonella isolates (2010) (1)
Adjustment of pH of enrichment media might improve selective isolation of MRSA from pig samples (2011) (1)
Molecular epidemiology of virulence and antimicrobial resistance determinants in Klebsiella pneumoniae from hospitalised patients in Kilimanjaro, Tanzania (2018) (1)
Antimicrobial resistance in Salmonella spp. recovered from patients admitted to six different hospitals in Tehran, Iran from 2007 to 2008 (2012) (1)
WherEvaluation of methods for the concentration and extraction of viruses from sewage water in the context of metagenomic sequencing (2016) (1)
WHO Global Foodborne Infections Network external quality assurance system (EQAS) for antimicrobial susceptibility testing of Salmonella isolates (2011) (1)
Susceptibility of Clostridium difficile toward antimicrobial agents used as feed additives for food animals. (2011) (1)
Large scale automated phylogenomical analysis of bacterial whole-genome isolates and the Evergreen platform (2019) (1)
Global Food Safety Portal: A visualisation tool to promote new research into data relations and assess trends, patterns and risk factors for foodborne pathogens (2011) (1)
Veterinary drug use in farm animal production and the antibiotic resistance problem (2001) (1)
Global Distribution and Diversity of Prevalent Sewage Water Plasmidomes (2022) (1)
Viral indicators for fecal contamination - a one-year viral metagenomic study of treatment efficiency in danish waste water treatment plants (2017) (1)
Associations of Streptococcus suisSerotype 2 Ribotype Profiles with Clinical Disease and Antimicrobial Resistance (1999) (1)
Diversity and epidemiology of plasmids from Enterobacteriaceae from human and non-human reservoirs (2012) (1)
The quantitative effect of antimicrobial usage in Danish pig farms on the abundance of antimicrobial resistance genes in slaughter pigs. (2023) (1)
The External Quality Assurance System of the WHO Global Foodborne Infections Network, 2017 (2019) (1)
Large scale automated phylogenomic analysis of bacterial isolates and the Evergreen Online platform (2020) (0)
Secrets of the hospital underbelly: abundance of antimicrobial resistance genes in hospital (2019) (0)
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage (2019) (0)
The gut microbiome but not the resistome is associated with urogenital schistosomiasis in preschool-aged children (2020) (0)
Author Correction: Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance (2023) (0)
Antimicrobial resistance in Salmonella from animals and food in the European Community, 2004-2008. (2010) (0)
Metagenomic Analysis of Sewage for Surveillance of Bacterial Pathogens: A Release Experiment to Determine Sensitivity (2021) (0)
Nanopore Sequencing Technology for Clinical Diagnosis of Infectious Diseases Where Laboratory Capacity Is Meager: A Case Report (2022) (0)
Adhesion of Escherichia coli under flow conditions reveals potential novel effects of FimH mutations (2016) (0)
Towards a European health research and innovation cloud (HRIC) (2020) (0)
Chapter 8: THERAPEUTICALLY RELEVANCE OF ANTIMICROBIAL GROWTH PROMOTERS (2000) (0)
Author Correction: Setting a baseline for global urban virome surveillance in sewage (2021) (0)
Erratum to: Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease (2017) (0)
Direct whole-genome sequencing of Plasmodium falciparum specimens from dried erythrocyte spots (2018) (0)
West Nile Virus spread in Europe - 1 phylogeographic pattern analysis and key 2 drivers 3 (2022) (0)
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage (2019) (0)
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries (2018) (0)
Antimicrobial consumption and occurrence of resistance in Salmonella Typhimurium from Danish pigs (2006) (0)
Author Correction: Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries (2018) (0)
Antimicrobial resistance in indicator Escherichia coli from animals and food in the European Community, 2004-2008. (2010) (0)
Feature matrix normalization, transformation and calculation of ß-diversity in metagenomics: Theoretical and applied perspectives on your decisions (2019) (0)
The 1st proficiancy testing - 2006 Salmonella and Campylobacter: Community Reference Laboratory – Antimicrobial Resistance (2007) (0)
Utilizing co-abundances of antimicrobial resistance genes to identify potential co-selection in the resistome (2022) (0)
Found of putative virulent genes of Streptococcus suis serotype 2 strains (2004) (0)
Staphylococcus aureus Community-Associated Methicillin-Resistant Livestock Origin for a Human Pandemic Clone of 2013 (2013) (0)
Ten Years of DANMAP: How Integrated Monitoring Contributed to Combat Antimicrobial Resistance in Denmark (2007) (0)
Evaluation of Real-Time WGS for Routine Typing, Surveillance and Outbreak 2 (2014) (0)
Antibiotika resistente Salmonella bakterier (2007) (0)
Reply to Catry and Threlfall (2009) (0)
Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods (2017) (0)
Evaluation of the uncorrected erythrocyte sedimentation rate and the serum/ plasma urea concentration in the diagnosis of the cystic endometrial hyperplasia\pyometra complex in the female dog (1993) (0)
P1012 First cases of infection with Escherichia coli containing plasmid-mediatedfiuoroquinolone resistance (qnrA and qnrS) in Scandinavia (2007) (0)
Predicting β-lactam susceptibility from the genome of Streptococcus pneumoniae and other mitis group streptococci (2023) (0)
Surv. WHO GSS WHO Global Salm-surv EQAS: Results of the Exernal Quality Assurance System for Campylobacter speciation, 2003, 2004 and 2006 (2007) (0)
Antimicrobials in livestock (2011) (0)
Comparison of biotyping, phage typing, plasmid profiling and ribotyping for discrimination of strains of Staphylococcus aureus from bovine mastitis (1993) (0)
Reference testing performed as part of the WHO Global Foodborne Infections Network activities (2010) (0)
The mastitis ring test 2008 (2008) (0)
Optimized treatment regimens for enrofloxacin in pigs limits selection for resistance in salmonella and coliforms (2004) (0)
OHEJP-RaDAR-D-JRP3-5.2 A proposal for a new paradigm for AMR surveillance (2021) (0)
Letter to the Editor: Macrolide Resistance in Campylobacter coli of Animal Origin in Denmark (2001) (0)
The consequences of discontinued use of antimicrobial growth promoters (AGP’s) for food producing animals in Denmark (2000) (0)
Analysis of 28 Arcobacter genomes belonging to different species (2017) (0)
The 17th EURL-AR Proficiency Test Salmonella, Campylobacter and genotypic characterisation 2014 (2015) (0)
Prevalence and risk factors for CTX-M gram-negative bacteria in hospitalized patients at a hospital in Tanzania (2018) (0)
Prevalence and risk factors for CTX-M gram-negative bacteria in hospitalized patients at a tertiary care hospital in Kilimanjaro, Tanzania (2018) (0)
Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania (2018) (0)
Oedemadisease caused by Escherichia coli 0-rough (1996) (0)
Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses (2023) (0)
High throughput resistance profiling of Plasmodium falciparum infections based on custom dual indexing and Illumina next generation sequencing-technology (2017) (0)
Survival and prevalence of Salmonella typhimurium in pig farms, agricultural soil and laboratory microcosms (1998) (0)
SamplesDirectly from Clinical Detection and Characterization of Rapid Whole-Genome Sequencing for (2014) (0)
Quantitative PCR versus metagenomics for monitoring antibiotic resistance genes: balancing high sensitivity and broad coverage (2023) (0)
Concluding Remarks and Future Aspects: Some Personal Views (2019) (0)
SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies (2022) (0)
One day in Denmark to evaluate the applicability of whole-genome sequencing in clinical microbiology diagnostics (2019) (0)
First detection of transmissible quinolone resistance genes in Escherichia coli isolates from humans in Denmark (2007) (0)
A curated data resource of 214K metagenomes for characterization of the global resistome (2022) (0)
Association between resistance to zinc and methicillin resistance in Staphylococcus aureus- Results of a comparative study of MRSA and MSSA CC398 strains isolated from pigs in Denmark (2009) (0)
External Quality Assurance System (EQAS) of the WHO Global Salmonella Surveillance and Laboratory Support Project (Global Salm-Surv) (2000) (0)
Antibiotic Dosing in Extended Dialysis (2009) (0)
First European External Quality Assurance System (EQAS) for isoaltion, identification and typing of methicillin-resistant Staphylococcus aureus (MRSA) from dust samples, year 2009 (2010) (0)
Real-Time WGS-based Typing of VTEC Isolates for Surveillance and Outbreak Detection (2013) (0)
Salmonella krefeld isolates in Serbia (2007) (0)
Predicting acute graft-versus-host-disease in allogeneic stem cell transplantation patients (2021) (0)
The 16th EURL-AR Proficiency Test - Enterococci, Staphylococci and E. coli 2014 (2015) (0)
Rise and fall of SARS-CoV-2 variants in Rotterdam: Comparison of wastewater and clinical surveillance (2023) (0)
The 7th EURL-AR Proficiency Testing Salmonella and Campylobacter 2009 (2010) (0)
Oedema in Danish pig herds 1994-1998. (2000) (0)
Heterogeneity among methicillin-resistant from Italian pig finishing holdings (2019) (0)
Megaphages infect Prevotella and variants are widespread in gut microbiomes (2019) (0)
Salmonella DT104 phylogeny. (2014) (0)
Report from the EUCAST Subcommittee on the Role of Whole Genome Sequencing ( WGS ) in Antimicrobial Susceptibility Testing of Bacteria . Version 1 , 2016 (2016) (0)
Comparison between Livestock and Community associated MRSA in Europe (2012) (0)
The 24th EURL-AR Proficiency Test - Enterococci, Staphylococci and Escherichia coli 2018 (2019) (0)
A tool to investigate new data relations and track trends, patterns and risk factors for foodborne pathogens. (2010) (0)
Identifying resistance genes in completely sequenced bacteria (2012) (0)
Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering (2020) (0)
Ability ofStaphylococcus aureusCoagulase Genotypes ToResist Neutrophil Bactericidal Activity andPhagocytosis (1994) (0)
Analytical Profiling of Airplane Wastewater - a New Matrix for Mapping Worldwide Patterns of Drug Use and Abuse (2017) (0)
Genome sequences of copper resistant and sensitive Enterococcus faecalis strains isolated from copper-fed pigs in Denmark (2015) (0)
Interplay between strain fitness and transmission frequency determines prevalence of antimicrobial resistance (2023) (0)
Screening for Zinc Resistance and czrC genes in methicillin-resistant and methicillin-susceptible Staphylococcus aureus from animal origin in Europe (2010) (0)
Dissection of the antimicrobial and hemolytic activity of Cap18: Generation of Cap18 derivatives with enhanced specificity (2018) (0)
Edinburgh Research Explorer Monitoring SARS-CoV-2 Circulation and Diversity through Community Wastewater Sequencing, the Netherlands and Belgium (2021) (0)
Antimicrobial resistance in Campylobacter from animals and food in the European Community, 2004-2008. (2010) (0)
Detection of Parasites in Microbiomes using Metagenomics (2022) (0)
From gram positive to negative and from cocci to rods. (2009) (0)
Surveillance of antimicrobial resistance among bacteria from food animals in Denmark, 1995-1998 (1999) (0)
Erratum Erratum to: Salmonella enterica serovar Typhi H58 clone has been endemic in Zimbabwe from 2012 to 2019. (2021) (0)
China, in 2006 Infections in Henan Province, Shigellaand Characterization of Human (2012) (0)
Proof of concept: Malaria rapid diagnostic tests and massively parallel sequencing for surveillance of molecular markers of antimalarial resistance in Bissau, Guinea-Bissau during 2014-2017 (2018) (0)
among Food Animals and Humans Enterococcus faecium Resistance in Incidence of High-Level Evernimicin (2002) (0)
Animal and public health surveillance of infectious diseases (2013) (0)
Resistance to penicillin in Staphylococcus aureus from bovine mastitis in Denmark and other countries (1999) (0)
Salmonella lamphun: first isolation of a new Salmonella serovar in Thailand. (2006) (0)
Salmonella bloodstream infection in rural central africa (2009) (0)
Livestock Origin for a Human Pandemic Clone of Community-Associated Methicillin-Resistant <named-content content-type='genus-species'>Staphylococcus aureus</named-content> (2013) (0)
Molecular characterization, phage types and antimicrobial susceptibilities of Salmonella enterica subsp. enterica serovar Enteritidis from chickens and chicken meat in Turkey. (2015) (0)
Antibiotic resistance in S. enterica isolated from Danish pig herds (1997) (0)
Salmonella Montevideo phylogeny (low quality sequences removed). (2014) (0)
Vancomycin-resistant Enterococcus faecium Clone in Swine , Europe (2019) (0)
Antibiotic resistance in bacteria of animal origin: II (2004) (0)
Chapter 5 The CGE Tool Box (2017) (0)
Detection of specific uncultured bacteriophages by fluorescence in situ hybridisation in pig microbiome (2022) (0)
Microorganisms - the good, the bad and the indispensable (2009) (0)
Isolates Causing Bovine Mastitis (2005) (0)
Characterizationofantimicrobial resistance inSalmonella enterica foodandanimal isolates fromColombia : identi ¢ cationofa qnrB 19-mediatedquinolone resistancemarker in twonovel serovars (2010) (0)
Prevalence and risk factors of CTX-M Enterobacteriaceae in hospitalised patients at a tertiary hospital in Kilimanjaro, Tanzania (2017) (0)
Molecular characterisation of multiple drug resistant Salmonella Typhimurium from Gomel region, Belarus (2006) (0)
Report of the 1 st External Quality Assurance System on Isolation , Identification and Typing of Methicillin resistant Staphylococcus aureus ( MRSA ) from Dust Samples , year 2009 (2009) (0)
Modelling the Effectiveness of Surveillance Based on Metagenomics in Detecting, Monitoring, and Forecasting Antimicrobial Resistance in Livestock Production Under Economic Constraints (2022) (0)
First description of an MRSA skin infection in a dog and attending veterinarian in Portugal (2009) (0)
The assessment of risks posed by use of disinfectants (2007) (0)
Plasmid characterization in bacterial isolates of public health relevance in a tertiary healthcare facility in Kilimanjaro, Tanzania (2022) (0)
Bedre identifikation af mastitis patogener (2009) (0)
Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid (2018) (0)
Rapid and precise alignment of raw reads against redundant databases with KMA (2018) (0)
Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering (2022) (0)
Edinburgh Explorer The gut microbiome but not the resistome is associated with urogenital schistosomiasis in preschool-aged children (2020) (0)

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