Gary B. Fogel
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Gary B. Fogelcomputer-science Degrees
Computer Science
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#10792
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Artificial Intelligence
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Computer Science
Gary B. Fogel's Degrees
- PhD Computer Science University of California, Davis
- Masters Computer Science University of California, Davis
- Bachelors Computer Science University of California, Davis
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Why Is Gary B. Fogel Influential?
(Suggest an Edit or Addition)According to Wikipedia, Gary Bryce Fogel is an American biologist and computer scientist. He is the Chief Executive Officer of Natural Selection, Inc. He is most known for his applications of computational intelligence and machine learning to bioinformatics, computational biology, and industrial optimization.
Gary B. Fogel's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Prokaryotic Genome Size and SSU rDNA Copy Number: Estimation of Microbial Relative Abundance from a Mixed Population (1999) (327)
- Evolutionary Computation In Bioinformatics (2003) (234)
- Noisy optimization problems - a particular challenge for differential evolution? (2004) (146)
- An approach for classification of highly imbalanced data using weighting and undersampling (2010) (131)
- Discovery of sequence motifs related to coexpression of genes using evolutionary computation. (2004) (117)
- HIV DNA Is Frequently Present within Pathologic Tissues Evaluated at Autopsy from Combined Antiretroviral Therapy-Treated Patients with Undetectable Viral Loads (2016) (115)
- Multiple sequence alignment using evolutionary programming (1999) (103)
- On the instability of evolutionary stable strategies in small populations (1998) (85)
- Computational intelligence approaches for pattern discovery in biological systems (2008) (72)
- On the instability of evolutionary stable strategies. (1997) (65)
- A Clustal alignment improver using evolutionary algorithms (2002) (62)
- CONTINUOUS EVOLUTIONARY PROGRAMMING: ANALYSIS AND EXPERIMENTS (1995) (61)
- Discovery of RNA structural elements using evolutionary computation. (2002) (60)
- Human immunodeficiency virus-1 evolutionary patterns associated with pathogenic processes in the brain (2010) (55)
- A statistical analysis of the TRANSFAC database. (2005) (54)
- Extensive HIV-1 Intra-Host Recombination Is Common in Tissues with Abnormal Histopathology (2009) (53)
- Emphasizing extinction in evolutionary programming (1999) (47)
- Evolutionary optimization, backpropagation, and data preparation issues in QSAR modeling of HIV inhibition by HEPT derivatives. (2003) (42)
- Prediction of R5, X4, and R5X4 HIV-1 Coreceptor Usage with Evolved Neural Networks (2008) (41)
- Computational Intelligence in Bioinformatics (2007) (38)
- Evolutionary programming (2018) (36)
- HIV-1 Nef in Macrophage-Mediated Disease Pathogenesis (2012) (35)
- Evolutionary computation for discovery of composite transcription factor binding sites (2008) (34)
- A Novel In Silico Approach to Drug Discovery via Computational Intelligence (2009) (34)
- QSAR using evolved neural networks for the inhibition of mutant PfDHFR by pyrimethamine derivatives (2008) (32)
- sRNA‐seq Analysis of Human Embryonic Stem Cells and Definitive Endoderm Reveals Differentially Expressed MicroRNAs and Novel IsomiRs with Distinct Targets (2014) (31)
- Computational Intelligence Methods for Docking Scores (2009) (31)
- Evolutionary Algorithms for Cancer Chemotherapy Optimization (2007) (29)
- Dynamical and topological robustness of the mammalian cell cycle network: A reverse engineering approach (2014) (28)
- Features associated with survival in metastatic melanoma patients treated with patient-specific dendritic cell vaccines. (2011) (27)
- Factors related to HIV-associated neurocognitive impairment differ with age (2015) (25)
- In silico screening against wild-type and mutant Plasmodium falciparum dihydrofolate reductase. (2008) (25)
- Evolutionary computation with extinction: experiments and analysis (2000) (24)
- Evolutionary Stable Strategies Are Not Always Stable under Evolutionary Dynamics (1995) (23)
- Multiple-vector self-adaptation in evolutionary algorithms. (2001) (23)
- HIV-1 nef protein visits B-cells via macrophage nanotubes: a mechanism for AIDS-related lymphoma pathogenesis? (2010) (22)
- Modeling the inhibition of quadruple mutant Plasmodium falciparum dihydrofolate reductase by pyrimethamine derivatives (2008) (22)
- From pluripotency to islets: miRNAs as critical regulators of human cellular differentiation. (2012) (21)
- High-Throughput Ligand Screening via Preclustering and Evolved Neural Networks (2007) (21)
- Identification of conserved regulatory RNA structures in prokaryotic metabolic pathway genes. (2005) (18)
- An Introduction to Bioinformatics for Computer Scientists (2003) (18)
- Improvement of clustal-derived sequence alignments with evolutionary algorithms (2003) (18)
- Quantitative structure-activity relationships by evolved neural networks for the inhibition of dihydrofolate reductase by pyrimidines. (2002) (18)
- Tracking the Emergence of Host-Specific Simian Immunodeficiency Virus env and nef Populations Reveals nef Early Adaptation and Convergent Evolution in Brain of Naturally Progressing Rhesus Macaques (2015) (17)
- Structural-based analysis of dihydrofolate reductase evolution. (2011) (17)
- Identification of Coding Regions in DNA Sequences Using Evolved Neural Networks (2003) (17)
- HIV-miR-H1 evolvability during HIV pathogenesis (2010) (16)
- Simulating natural selection as a culling mechanism on finite populations with the hawk-dove game (2011) (14)
- MicroRNA dynamics during human embryonic stem cell differentiation to pancreatic endoderm. (2015) (14)
- Evolutionary Computation for the Inference of Natural Evolutionary Histories (12)
- Reconstruction of DNA Sequence Information from a Simulated DNA Chip Using Evolutionary Programming (1998) (11)
- HIV-associated neuropathogenesis: A systems biology perspective for modeling and therapy (2014) (11)
- On the relationship between GC content and the number of predicted microRNA binding sites by MicroInspector (2008) (11)
- Brain-specific HIV Nef identified in multiple patients with neurological disease (2018) (11)
- A survey of recent work on evolutionary approaches to the protein folding problem (1999) (10)
- Ecological Applications of Evolutionary Computation (2006) (10)
- Modeling the evolution of drug resistance in malaria (2012) (9)
- Quantitative structure-property relationships for drug solubility prediction using evolved neural networks (2008) (9)
- Identification of dual-tropic HIV-1 using evolved neural networks (2015) (9)
- Docking scores and QSAR using evolved neural networks for the Pan-inhibition of wild-type and mutant PfDHFR by cycloguanil derivatives (2009) (9)
- Lynn Margulis (1938-2011) (2012) (9)
- Di-codon Usage for Gene Classification (2009) (8)
- ProteinLigand Docking with Evolutionary Algorithms (2007) (8)
- An Introduction to Evolutionary Computation for Biologists (2003) (8)
- Derivation of quantitative structure-toxicity relationships for ecotoxicological effects of organic chemicals: evolving neural networks and evolving rules (2005) (7)
- Evolved neural networks for quantitative structure-activity relationships of anti-HIV compounds (2002) (7)
- Evolved Neural Networks for High Throughput Anti-HIV Ligand Screening (2006) (6)
- Simulated sequencing by hybridization using evolutionary programming (1999) (6)
- HIV-1 Evolutionary Patterns Associated with Metastatic Kaposi's Sarcoma during AIDS (2016) (6)
- Di-codon usage for classification of genes (2009) (5)
- Special Section on Machine Intelligence Approaches to Systems Biology (2008) (5)
- Evolving DNA classifiers with extinction based ring optimization (2015) (5)
- Functions for the analysis of exploration and exploitation (2013) (5)
- Machine learning approaches for customized docking scores: Modeling of inhibition of Mycobacterium tuberculosis enoyl acyl carrier protein reductase (2010) (5)
- Parameter optimization of an evolutionary algorithm for RNA structure discovery (2004) (5)
- Evolutionary Feature Selection for Bioinformatics (2007) (5)
- Guest Editors' Introduction to the Special Section: Computational Intelligence Approaches in Computational Biology and Bioinformatics (2007) (4)
- The Art of Armadillo Lizards (Cordylus cataphractus): Fifteen Years of Captive Observations (2003) (4)
- Feature Selection Approach for Quantitative Prediction of Transcriptional Activities (2006) (4)
- Ring optimization with extinction (2015) (4)
- Classifying sonar returns for the presence of mines: evolving neural networks and evolving rules (2005) (4)
- Identification of Functional RNA Genes Using Evolved Neural Networks (2005) (4)
- Temperature gradient chamber for relative growth rate analysis of yeast. (1998) (4)
- A pan-genome method to determine core regions of the Bacillus subtilis and Escherichia coli genomes (2020) (4)
- The Application of Evolutionary Computation to Selected Problems in Molecular Biology (1997) (3)
- Comprar Computational Intelligence in Bioinformatics | Gary B. Fogel | 9780470105269 | Wiley (2007) (3)
- On the Physicochemical and Structural Modifications Associated with HIV-1 Subtype B Tropism Transition. (2016) (3)
- Horizontal transfer and evolution of wall teichoic acid gene cassettes in Bacillus subtilis (2021) (3)
- Structure-based analysis of Bacilli and plasmid dihydrofolate reductase evolution. (2017) (3)
- Towards predictive structure-based models of evolved drug resistance (2012) (3)
- Corrections to "Guest Editorial: Special Issue on Human-Machine Symbiosis" (2018) (3)
- Identification and analysis of transcription factor family-specific features derived from DNA and protein information (2010) (3)
- Longitudinal analysis of intra-host simian immunodeficiency virus recombination in varied tissues of the rhesus macaque model for neuroAIDS. (2013) (3)
- Determination of the Relative Importance of Gene Function or Taxonomic Grouping to Codon Usage Bias Using Cluster Analysis and SVMs (2006) (3)
- FuzzyGranular Methods for Identifying Marker Genes from Microarray Expression Data (2007) (2)
- Machine Learning Approach for Prediction of Human Mitochondrial Proteins (2007) (2)
- Human Immunodeficiency Virus (HIV) Status Drives Diffuse Large B Cell Lymphoma through Oncogenic Signaling Pathways (2017) (2)
- Predicted coreceptor usage at end-stage HIV disease in tissues derived from subjects on antiretroviral therapy with an undetectable plasma viral load. (2017) (2)
- Corrections to “Guest Editorial: Special Issue on Human–Machine Symbiosis” (2018) (2)
- Observations on the Giant Sungazer Lizard, Cordylus giganteus, in Captivity (2000) (2)
- Expression of Tetrahymena histone H4 in yeast. (1997) (2)
- Evolved neural networks for HIV-1 co-receptor identification (2014) (2)
- A pan-genome method to determine core regions of the Bacillus subtilis and Escherichia coli genomes. (2021) (1)
- Fuzzy Approaches for the Analysis CpG Island Methylation Patterns (2007) (1)
- Founding Editor-in-Chief (2004) (1)
- The HIV nef protein within ARL is genetically and structurally distinct from those in the brain of patients with HAD (2010) (1)
- Hybrid of Neural Classifier and Swarm Intelligence in Multiclass Cancer Diagnosis with Gene Expression Signatures (2007) (1)
- Modeling the evolution of drug resistance in Plasmodium falciparum DHFR (2013) (1)
- Using Evolved Neural Networks to Elucidate Nef Features Associated with HIV-1 Subtype Differentiation (2021) (1)
- Special Issue on Computational Intelligence in Bioinformatics [Guest Editorial] (2012) (1)
- Disease-specific HIV Nef identified in multiple patients with neurological disorders and cancers (2017) (1)
- 2015 Information Processing in Cells and Tissues (IPCAT 2015) (2016) (1)
- VP-Conference Activities Vision Statement [Society Briefs] (2010) (1)
- miRNA Regulation of Human Embryonic Stem Cell Differentiation (2015) (1)
- The Aero Club of California: Initial Years (1908-1909) (2019) (1)
- Quest for Flight: John J. Montgomery and the Dawn of Aviation in the West (2012) (1)
- The history of life through evolutionary computation (2005) (1)
- Fuzzy OntologyBased Text Mining System for Knowledge Acquisition, Ontology Enhancement, and Query Answering from Biomedical Texts (2007) (1)
- Prediction of Transcription Factor Families Using DNA Sequence Features (2008) (1)
- RNA Secondary Structure Prediction Employing Evolutionary Algorithms (2007) (1)
- Identification of Synthetic Engineering in Prokaryotic Genomes Using Evolved Neural Networks (2022) (1)
- John J. Montgomery's Circulation Theory of Lift (2016) (0)
- Using Neural Networks to Identify Features Associated with HIV Nef Protein and Cancer (2020) (0)
- Tutorial 7—Adaptive Business Intelligence - Evolutionary Computation for Real World (2007) (0)
- The Effect of Various Histone H4 Sequences on Yeast Viability (1998) (0)
- 2010 TCBB Reviewers List (2011) (0)
- Emerging Patterns in HIV-1 gp120 Variable Domains in Anatomical Tissues in the Absence of a Plasma Viral Load. (2019) (0)
- A History of the IEEE Computational Intelligence Society (2009) (0)
- Finding Clusters in Gene Expression Data Using EvoCluster (2007) (0)
- Evolutionary algorithms for supertree search (2012) (0)
- Deciphering mechanisms of gene regulation through evolutionary computation (2006) (0)
- A word of appreciation to our publisher Anthony Newman. (2021) (0)
- High-throughput toxicological classification of candidate drug compounds using gene expression, evolved neural networks, and a cell-based platform (2011) (0)
- Welcome message from the conference chairs (2010) (0)
- On the Invention of Lateral Control: Wright and Montgomery (2019) (0)
- Editorial: 2020 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (IEEE CIBCB 2020) (2022) (0)
- Brain-specific HIV Nef identified in multiple patients with neurological disease (2017) (0)
- IEEE CIS VP-Conferences Activities Vision Statement [Society Briefs] (2019) (0)
- Conference calendar (1999) (0)
- The Persistence of HIV Diversity, Transcription, and Nef Protein in Kaposi’s Sarcoma Tumors during Antiretroviral Therapy (2022) (0)
- Application of multiplexed RT-PCR to cancer diagnosis (2005) (0)
- A Survey of Application and Future Directions of Computational Intelligence (2013) (0)
- AE 123:The Aerospace Engineer (2014) (0)
- Ruth Blaney Alexander (2019) (0)
- Microarray Data Mining with Evolutionary Computation (2005) (0)
- The Role of Ago2 in microRNA Biogenesis: An Investigation of miR-21 (2015) (0)
- Editorial for special issue on “Soft Computing for Bioinformatics and Medical Informatics” (2006) (0)
- VP-Conference Activities Vision Statement (2010) (0)
- Conference Calendar (1991) (0)
- Featured Posters Page 1 Geographical Impact on Metagenomes By Daniel Pick (2011) (0)
- Abstract 4845: Microarray analysis of melanoma autologous tumor cell lines used as the source of tumor associated antigens in patient-specific dendritic cell immunotherapy phase II trial in patients with metastatic melanoma (2015) (0)
- IEEE SSCI 2014 General Committee (2014) (0)
- Conference report - 2005 IEEE symposium on computational intelligence in bioinformatics and computational biology (IEEE CIBCB 2005) (2006) (0)
- A Report on the IEEE Life Sciences Grand Challenges Conference [Conference Report] (2013) (0)
- Classification of mouse fRNA genes using evolved neural networks (2008) (0)
- Conference calendar (1979) (0)
- [Conference Calendar] (2020) (0)
- Conference Calendar (1995) (0)
- PP 1.18 – 00105 Machine learning identifies differentiating physicochemical signatures between HIV subtypes in Nef domains associated with host-cell regulation (2022) (0)
- Factors related to HIV-associated neurocognitive impairment differ with age (2014) (0)
- A transition to a new Editor-in-Chief (2009) (0)
- [Conference Calendar] (2010) (0)
- Revisiting Bremermann's genetic algorithm: II. Comparing discrete multiparent recombination to mutation (2001) (0)
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