Gavin Sherlock
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Biology
Gavin Sherlock's Degrees
- PhD Genetics Stanford University
- Masters Molecular Biology Stanford University
- Bachelors Biology University of California, Berkeley
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Why Is Gavin Sherlock Influential?
(Suggest an Edit or Addition)According to Wikipedia, Gavin Sherlock is an English-American professor of genetics at Stanford University. Research Sherlock obtained a Bachelor of Science degree in genetics in 1991 from the University of Manchester, where he also earned a Ph.D. in molecular biology three years later.
Gavin Sherlock's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Gene Ontology: tool for the unification of biology (2000) (34828)
- Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling (2000) (9767)
- Integrated Genomic Analyses of Ovarian Carcinoma (2011) (6411)
- Comprehensive genomic characterization defines human glioblastoma genes and core pathways (2008) (5775)
- Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. (1998) (5332)
- Minimum information about a microarray experiment (MIAME)—toward standards for microarray data (2001) (4145)
- Missing value estimation methods for DNA microarrays (2001) (3484)
- GO: : TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes (2004) (1821)
- Identification of genes periodically expressed in the human cell cycle and their expression in tumors. (2002) (1529)
- A User's Guide to the Encyclopedia of DNA Elements (ENCODE) (2011) (1467)
- The prognostic role of a gene signature from tumorigenic breast-cancer cells. (2007) (1047)
- Evolution of pathogenicity and sexual reproduction in eight Candida genomes (2009) (929)
- GC-Content Normalization for RNA-Seq Data (2011) (664)
- A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains. (2000) (601)
- Molecular characterisation of soft tissue tumours: a gene expression study (2002) (597)
- The Stanford Microarray Database (2001) (569)
- Design and implementation of microarray gene expression markup language (MAGE-ML) (2002) (493)
- SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data (2003) (466)
- Analysis of large-scale gene expression data. (2000) (442)
- Comparison of the complete protein sets of worm and yeast: orthology and divergence. (1998) (442)
- The Gene Ontology Consortium (2000) (419)
- Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO) (2002) (383)
- The Stanford Microarray Database: data access and quality assessment tools (2003) (379)
- A Human-Curated Annotation of the Candida albicans Genome (2005) (338)
- Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus (2017) (338)
- Quantitative evolutionary dynamics using high-resolution lineage tracking (2015) (336)
- Isolation and Molecular Characterization of Cancer Stem Cells in MMTV‐Wnt‐1 Murine Breast Tumors (2008) (302)
- Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus. (2008) (284)
- Molecular Characterization of Clonal Interference during Adaptive Evolution in Asexual Populations of Saccharomyces cerevisiae (2008) (267)
- Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions (2015) (263)
- The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data (2016) (258)
- The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations (2013) (250)
- Imputing Missing Data for Gene Expression Arrays (2001) (249)
- Reciprocal Sign Epistasis between Frequently Experimentally Evolved Adaptive Mutations Causes a Rugged Fitness Landscape (2011) (248)
- TB database: an integrated platform for tuberculosis research (2008) (234)
- Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads (2010) (224)
- Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae (2013) (221)
- The Stanford Microarray Database accommodates additional microarray platforms and data formats (2004) (220)
- DNA methylation profiling reveals novel biomarkers and important roles for DNA methyltransferases in prostate cancer. (2011) (218)
- A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB (2006) (212)
- Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq. (2010) (210)
- The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata (2011) (209)
- Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments (2012) (205)
- The Stanford Microarray Database: implementation of new analysis tools and open source release of software (2006) (190)
- Whole Genome, Whole Population Sequencing Reveals That Loss of Signaling Networks Is the Major Adaptive Strategy in a Constant Environment (2013) (190)
- Bulk Segregant Analysis by High-Throughput Sequencing Reveals a Novel Xylose Utilization Gene from Saccharomyces cerevisiae (2010) (187)
- Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast (2016) (174)
- The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources (2011) (161)
- Identification of cell cycle–regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factors (2013) (158)
- Standards for Microarray Data (2002) (157)
- Global analysis of gene function in yeast by quantitative phenotypic profiling (2006) (153)
- Microarray karyotyping of commercial wine yeast strains reveals shared, as well as unique, genomic signatures (2005) (149)
- The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community (2009) (129)
- Hunger Artists: Yeast Adapted to Carbon Limitation Show Trade-Offs under Carbon Sufficiency (2011) (125)
- Submission of Microarray Data to Public Repositories (2004) (121)
- Implementation of GenePattern within the Stanford Microarray Database (2008) (118)
- The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information (2004) (118)
- TB database 2010: overview and update. (2010) (118)
- Gene flow contributes to diversification of the major fungal pathogen Candida albicans (2018) (115)
- Whole Genome Analysis of 132 Clinical Saccharomyces cerevisiae Strains Reveals Extensive Ploidy Variation (2016) (115)
- Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE) (2008) (115)
- Integrating functional genomic information into the Saccharomyces Genome Database (2000) (113)
- The Longhorn Array Database (LAD): An Open-Source, MIAME compliant implementation of the Stanford Microarray Database (SMD) (2003) (112)
- Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure (2013) (110)
- Recurrent Rearrangement during Adaptive Evolution in an Interspecific Yeast Hybrid Suggests a Model for Rapid Introgression (2013) (103)
- The Stanford Tissue Microarray Database (2007) (94)
- Industrial fuel ethanol yeasts contain adaptive copy number changes in genes involved in vitamin B1 and B6 biosynthesis. (2009) (90)
- Sequence resources at the Candida Genome Database (2006) (79)
- A Genome-Wide Analysis Reveals No Nuclear Dobzhansky-Muller Pairs of Determinants of Speciation between S. cerevisiae and S. paradoxus, but Suggests More Complex Incompatibilities (2010) (77)
- New tools at the Candida Genome Database: biochemical pathways and full-text literature search (2009) (71)
- Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data (2001) (69)
- Ras Signaling Gets Fine-Tuned: Regulation of Multiple Pathogenic Traits of Candida albicans (2013) (62)
- Different selective pressures lead to different genomic outcomes as newly-formed hybrid yeasts evolve (2012) (61)
- Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure (1999) (61)
- Extensive and coordinated control of allele-specific expression by both transcription and translation in Candida albicans (2014) (58)
- Funding high-throughput data sharing (2004) (53)
- Of fish and chips (2005) (51)
- PHENOTYPIC AND GENOTYPIC CONVERGENCES ARE INFLUENCED BY HISTORICAL CONTINGENCY AND ENVIRONMENT IN YEAST (2014) (50)
- Hidden Complexity of Yeast Adaptation under Simple Evolutionary Conditions (2018) (47)
- The dynamics of adaptive genetic diversity during the early stages of clonal evolution (2017) (45)
- Novel Low Abundance and Transient RNAs in Yeast Revealed by Tiling Microarrays and Ultra High–Throughput Sequencing Are Not Conserved Across Closely Related Yeast Species (2008) (44)
- Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages (2018) (43)
- Single nucleotide mapping of trait space reveals Pareto fronts that constrain adaptation (2019) (41)
- An open letter to the scientific journals (2002) (40)
- Gene Ontology and the annotation of pathogen genomes: the case of Candida albicans. (2009) (38)
- Ex Uno Plures: Clonal Reinforcement Drives Evolution of a Simple Microbial Community (2014) (38)
- Microarray karyotyping of maltose‐fermenting Saccharomyces yeasts with differing maltotriose utilization profiles reveals copy number variation in genes involved in maltose and maltotriose utilization (2010) (37)
- Clustering microarray data. (2006) (37)
- Caryoscope: An Open Source Java application for viewing microarray data in a genomic context (2004) (34)
- Di erent types of di use large b-cell lymphoma identi ed by gene expression pro ling (2000) (34)
- Turbidostat culture of Saccharomyces cerevisiae W303-1A under selective pressure elicited by ethanol selects for mutations in SSD1 and UTH1. (2012) (33)
- The Candida Genome Database: facilitating research on Candida albicans molecular biology. (2006) (33)
- Analysis of Repair Mechanisms following an Induced Double-Strand Break Uncovers Recessive Deleterious Alleles in the Candida albicans Diploid Genome (2016) (33)
- Heterozygote Advantage Is a Common Outcome of Adaptation in Saccharomyces cerevisiae (2016) (33)
- The Candida Genome Database: The new homology information page highlights protein similarity and phylogeny (2013) (33)
- Curation accuracy of model organism databases (2014) (30)
- EXPLORATORY SCREENING OF GENES AND CLUSTERS FROM MICROARRAY EXPERIMENTS (2002) (29)
- Comparative metabolic footprinting of a large number of commercial wine yeast strains in Chardonnay fermentations. (2013) (28)
- Starting to cycle: G1 controls regulating cell division in budding yeast. (1993) (28)
- Reply: whole-culture synchronization - effective tools for cell cycle studies. (2004) (27)
- Analysis of Large-scale Gene Expression Data (2001) (27)
- Adaptation is influenced by the complexity of environmental change during evolution in a dynamic environment (2019) (26)
- Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE). (2006) (26)
- Molecular cloning and analysis of CDC28 and cyclin homologues from the human fungal pathogen Candida albicans (1994) (26)
- Improved discovery of genetic interactions using CRISPRiSeq across multiple environments (2019) (26)
- Microarray Data Standards: An Open Letter (2004) (25)
- Radiation-induced effects on gene expression: an in vivo study on breast cancer. (2006) (25)
- iSeq: A New Double-Barcode Method for Detecting Dynamic Genetic Interactions in Yeast (2016) (25)
- PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools (2013) (24)
- Improved Gene Ontology Annotation for Biofilm Formation, Filamentous Growth, and Phenotypic Switching in Candida albicans (2012) (23)
- Top-down standards will not serve systems biology (2006) (23)
- APJ1 and GRE3 Homologs Work in Concert to Allow Growth in Xylose in a Natural Saccharomyces sensu stricto Hybrid Yeast (2012) (23)
- The Stanford Microarray Database: a user's guide. (2006) (21)
- Changes in the distribution of fitness effects and adaptive mutational spectra following a single first step towards adaptation (2020) (21)
- GeneXplorer: an interactive web application for microarray data visualization and analysis (2004) (21)
- Annotare—a tool for annotating high-throughput biomedical investigations and resulting data (2010) (20)
- The Valley-of-Death: reciprocal sign epistasis constrains adaptive trajectories in a constant, nutrient limiting environment. (2014) (20)
- Standards for microarray data: an open letter. (2004) (19)
- A Single Nucleotide Polymorphism Uncovers a Novel Function for the Transcription Factor Ace2 during Candida albicans Hyphal Development (2015) (18)
- Final words: cell age and cell cycle are unlinked. (2004) (17)
- A guide to microarray experiments-an open letter to the scientific journals (2002) (17)
- Literature-Based Gene Curation and Proposed Genetic Nomenclature for Cryptococcus (2014) (16)
- An open letter on microarray data from the MGED Society. (2004) (13)
- Using the Candida Genome Database. (2018) (13)
- Storage and retrieval of microarray data and open source microarray database software (2005) (13)
- Extremely Rare Polymorphisms in Saccharomyces cerevisiae Allow Inference of the Mutational Spectrum (2017) (12)
- The underlying principles of scientific publication. (2002) (12)
- Experimental evolution: prospects and challenges. (2014) (11)
- Quantifying rapid bacterial evolution and transmission within the mouse intestine. (2021) (11)
- A guide to microarray experiments—an open letter to the scientific journals (2002) (11)
- Transmission and persistence of crAssphage, a ubiquitous human-associated bacteriophage (2018) (9)
- Diff-seq: A high throughput sequencing-based mismatch detection assay for DNA variant enrichment and discovery (2018) (8)
- STARTing to recycle (2004) (7)
- No evidence that synonymous mutations in yeast genes are mostly deleterious (2022) (7)
- Preparation of Yeast DNA Sequencing Libraries. (2016) (7)
- Cell cycle: Complex evolution (2006) (6)
- Neural networks enable efficient and accurate simulation-based inference of evolutionary parameters from adaptation dynamics (2022) (6)
- Identification of clinically distinct types of diffuse large B-cell lymphoma based on gene expressio (2000) (5)
- Wrestling with SUMO and bio-ontologies (2006) (5)
- High-Throughput Yeast Strain Sequencing. (2016) (5)
- The XBabelPhish MAGE-ML and XML Translator (2008) (4)
- Evolutionary dynamics and structural consequences of de novo beneficial mutations and mutant lineages arising in a constant environment (2021) (4)
- Microarray databases: storage and retrieval of microarray data. (2003) (4)
- Rapid Evolution of Simple Microbial Communities in the Laboratory (2011) (4)
- How to Use the Candida Genome Database. (2016) (4)
- Basic References (3)
- Author Correction: Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages (2020) (3)
- Quantifying the interplay between rapid bacterial evolution within the mouse intestine and transmission between hosts (2020) (3)
- PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools (2014) (3)
- Evolutionary dynamics of de novo mutations and mutant lineages arising in a simple, constant environment (2019) (3)
- Seeking Goldilocks During Evolution of Drug Resistance (2017) (2)
- Changes to NIH Grant System May Backfire (2008) (2)
- Paths to adaptation under fluctuating nitrogen starvation: The spectrum of adaptive mutations in Saccharomyces cerevisiae is shaped by transposons and microhomology-mediated recombination (2022) (2)
- TITLE APJ 1 and GRE 3 Homologs Work in Concert to Allow Growth in Xylose in a Natural Saccharomyces sensu stricto Hybrid Yeast (2012) (2)
- S. cerevisiae Cells Can Grow without the Pds5 Cohesin Subunit (2022) (2)
- OntologyWidget – a reusable, embeddable widget for easily locating ontology terms (2007) (2)
- Single Nucleotide Mapping of the Locally Accessible Trait Space in Yeast Reveals Pareto Fronts that Constrain Initial Adaptation (2019) (2)
- Seven years of yeast microarray analysis (2005) (1)
- Fit-Seq2.0: An Improved Software for High-Throughput Fitness Measurements Using Pooled Competition Assays. (2023) (1)
- Directed Evolution and Genomic Analysis of Novel Yeast Species for More Efficient Biomass Conversion (2005) (1)
- Evolutionary dynamics and structural consequences of de novo beneficial mutations and mutant lineages arising in a constant environment (2021) (1)
- Different selective pressures lead to different genomic outcomes as newly-formed hybrid yeasts evolve (2012) (1)
- Simulation-based inference of evolutionary parameters from adaptation dynamics using neural networks (2021) (1)
- Quantitative evolutionary dynamics of one million barcoded lineages (2015) (1)
- Genetic Manipulation of Brewing Yeasts: Challenges and Opportunities (2017) (1)
- Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus (2017) (1)
- Empirical evidence for heterozygote advantage in adapting diploid populations of Saccharomyces cerevisiae (2015) (1)
- What are Microarrays (2007) (1)
- Candida albicans genomics resources and tools. (2007) (0)
- 3S-Ca01 The Aspergillus Genome Database : Integrating a Wealth of Aspergillus Omics Data (2013) (0)
- Microarray Data: Annotation, Storage, Retrieval and Communication (2005) (0)
- Ras signaling gets fine-tuned : regulation of multiple pathogenic traits of Candida 1 albicans 2 3 (2013) (0)
- Interspecific Yeast Hybrids and Their Ancestors Follow Different Evolutionary Trajectories Under Resource Limitation (2010) (0)
- Author Correction: Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages (2020) (0)
- An Improved Algorithm for Inferring Mutational Parameters from Bar-Seq Evolution Experiments (2022) (0)
- Yca1 metacaspase: Diverse functions determine how yeast live and let die. (2023) (0)
- both transcription and translation in Candida albicans Extensive and coordinated control of allele-specific expression by Material Supplemental (2014) (0)
- Lawrence Berkeley National Laboratory Recent Work Title Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus Permalink (2017) (0)
- A Genome-Wide Analysis Reveals No Nuclear Dobzhansky-Muller Pairs of Speciation Genes Between S. cerevisiae and S. paradoxus, but Suggests More Complex Incompatibilities (2019) (0)
- 13. Through a Glass, Clearly: Experimental Evolution as a Window on Adaptive Genome Evolution (2019) (0)
- Far From Home: Evolution of haploid and diploid populations reveals common, strong, and variable pleiotropic effects in non-home environments (2023) (0)
- Unveiling adaptation using high-resolution lineage tracking (2013) (0)
- Gene flow contributes to diversification of the major fungal pathogen Candida albicans (2018) (0)
- Saccharomyces pastorianus lager yeast Reconstruction of the genome origins and evolution of the hybrid Material Supplemental (2008) (0)
- Erratum: Starting to cycle: G1 controls regulating cell division in budding yeast. (2022) (0)
- MoktaliVenkateshBotanyPlantPathologyLiterature-BasedGene_TableS1.xls (2017) (0)
- 02-Chromosome structure and function (2007) (0)
- 195 Gene expression changes in tumours from breast cancer patients receiving radiation therapy (2006) (0)
- Predicting gene dosage using genomic sequence data (2008) (0)
- Digging Deeper into Experimentally Evolving Microbial Populations: How Deep Sequencing Is Clarifying the Nature of Adaptation (2016) (0)
- Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae (2013) (0)
- Insufficient evidence for non-neutrality of synonymous mutations (2023) (0)
- Year Paper GC-Content Normalization for RNA-Seq Data (0)
- How to Use the Candida Genome Database. (2022) (0)
- using RNA-seq Candida albicans fungal pathogen Comprehensive annotation of the transcriptome of the human Material (2010) (0)
- MoktaliVenkateshBotanyPlantPathologyLiterature-BasedGene.pdf (2017) (0)
- Assembly of a phased diploid Candida albicansgenome facilitates allele-specific measurements and provides a simple model for repeat and indel structure (2013) (0)
- Computational Methods and Bioinformatic Tools (2004) (0)
- The dynamics of adaptive genetic diversity during the early stages of clonal evolution (2018) (0)
- Molecular characterization of adaptive evolution in Saccharomyces cerevisiae (2008) (0)
- Is whole-culture synchronization biology ’ s ‘ perpetual-motion machine ’ ? (2004) (0)
- Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages (2020) (0)
- Single nucleotide mapping of locally accessible trait space in evolving yeast (2019) (0)
- CryptococcusGenetic Nomenclature for (2014) (0)
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