Helen M. Berman

Q: What Schools Are Affiliated With Helen M. Berman

Helen M. Berman is affiliated with the following schools: Institute of Cancer Research, Rutgers University, University of California, San Diego, University of Southern California, National University of Tucumán, University of Pittsburgh, Barnard College

Helen M. Berman's AcademicInfluence.com Rankings

Helen M. Berman

Chemistry

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#1239

Historical Rank

#319

USA Rank

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Chemistry

Why Is Helen M. Berman Influential?

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According to Wikipedia, Helen Miriam Berman is a Board of Governors Professor of Chemistry and Chemical Biology at Rutgers University and a former director of the RCSB Protein Data Bank . A structural biologist, her work includes structural analysis of protein-nucleic acid complexes, and the role of water in molecular interactions. She is also the founder and director of the Nucleic Acid Database, and led the Protein Structure Initiative Structural Genomics Knowledgebase.

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Helen M. Berman's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

The Protein Data Bank (2000) (33289)
Announcing the worldwide Protein Data Bank (2003) (2318)
The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data (2006) (1013)
The Protein Data Bank. (2002) (945)
The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids. (1992) (868)
Crystal and molecular structure of a collagen-like peptide at 1.9 A resolution. (1994) (864)
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy (2018) (764)
The RCSB protein data bank: integrative view of protein, gene and 3D structural information (2016) (672)
The RCSB Protein Data Bank: redesigned web site and web services (2010) (599)
An overview of the structures of protein-DNA complexes (2000) (586)
A standard reference frame for the description of nucleic acid base-pair geometry. (2001) (549)
Hydration structure of a collagen peptide. (1995) (536)
The Protein Data Bank and the challenge of structural genomics (2000) (527)
The RCSB Protein Data Bank: new resources for research and education (2012) (470)
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education (2014) (457)
Outcome of the First Electron Microscopy Validation Task Force Meeting (2012) (422)
Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive. (2017) (421)
The Protein Data Bank: a historical perspective. (2008) (408)
Protein-DNA interactions: A structural analysis. (1999) (406)
The Protein Data Bank and structural genomics (2003) (397)
Protein-RNA interactions: a structural analysis. (2001) (393)
Protein Data Bank: the single global archive for 3D macromolecular structure data (2018) (347)
The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema (2004) (339)
The RCSB PDB information portal for structural genomics (2005) (317)
Catabolite activator protein: DNA binding and transcription activation. (2004) (304)
The interaction of intercalating drugs with nucleic acids. (1981) (300)
The Protein Data Bank: unifying the archive (2002) (297)
Sequence dependent conformational variations of collagen triple-helical structure (1999) (293)
Tools for the automatic identification and classification of RNA base pairs (2003) (288)
EMDataBank.org: unified data resource for CryoEM (2010) (265)
Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface. (1997) (250)
New parameters for the refinement of nucleic acid-containing structures. (1996) (244)
RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution). (2008) (235)
Automated and accurate deposition of structures solved by X-ray diffraction to the Protein Data Bank. (2004) (225)
Structural Basis of Transcription Activation: The CAP-αCTD-DNA Complex (2002) (215)
Rituximab use in the catastrophic antiphospholipid syndrome: descriptive analysis of the CAPS registry patients receiving rituximab. (2013) (201)
Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins. (2003) (194)
The cAMP binding domain: an ancient signaling module. (2005) (189)
Ligand Depot: a data warehouse for ligands bound to macromolecules (2004) (186)
Hydration of the DNA bases is local. (1995) (186)
The nucleic acid database. (2002) (185)
Crystallographic Evidence for Cα–H···O=C Hydrogen Bonds in a Collagen Triple Helix (1996) (182)
RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education (2017) (180)
Conformations of the sugar-phosphate backbone in helical DNA crystal structures. (1997) (180)
Staggered molecular packing in crystals of a collagen-like peptide with a single charged pair. (2000) (178)
TargetDB: a target registration database for structural genomics projects (2004) (173)
The crystal and molecular structure of a collagen-like peptide with a biologically relevant sequence. (2001) (173)
The Nucleic Acid Database: new features and capabilities (2013) (171)
Hydration of the phosphate group in double-helical DNA. (1998) (165)
PDBML: the representation of archival macromolecular structure data in XML (2005) (164)
Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. (2015) (163)
Geometric Parameters in Nucleic Acids: Sugar and Phosphate Constituents (1996) (161)
EMDataBank unified data resource for 3DEM (2013) (161)
Validation of Structures in the Protein Data Bank (2017) (158)
Crystal structure of a naturally occurring dinucleoside phoaphate: uridylyl 3',5'-adenosine phosphate model for RNA chain folding. (1972) (153)
Crystal structure of the unique RNA-binding domain of the influenza virus NS1 protein (1997) (150)
Geometric parameters in nucleic acids: Nitrogenous bases (1996) (150)
X-ray crystallographic determination of a collagen-like peptide with the repeating sequence (Pro-Pro-Gly). (1998) (147)
Remediation of the protein data bank archive (2007) (146)
Recommendations of the wwPDB NMR Validation Task Force. (2013) (141)
The crystal structure of an autoprocessed Ser221Cys-subtilisin E-propeptide complex at 2.0 A resolution. (1998) (138)
The Protein Data Bank, 1999– (2006) (137)
The Protein Model Portal (2008) (136)
The distribution and query systems of the RCSB Protein Data Bank (2004) (134)
Outcome of a workshop on applications of protein models in biomedical research. (2009) (129)
Data Deposition and Annotation at the Worldwide Protein Data Bank (2009) (123)
The CCPN project: an interim report on a data model for the NMR community (2002) (122)
RNA conformational classes. (2004) (118)
The structure of drug-deoxydinucleoside phosphate complex; generalized conformational behavior of intercalation complexes with RNA and DNA fragments (1980) (116)
BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions (2008) (114)
The PDB data uniformity project (2001) (112)
Highly structured water network in crystals of a deoxydinucleoside–drug complex (1980) (111)
The Protein Data Bank at 40: reflecting on the past to prepare for the future. (2012) (111)
The Protein Data Bank archive as an open data resource (2014) (109)
[30] Macromolecular crystallographic information file (1997) (109)
Structural basis of transcription activation: the CAP-alpha CTD-DNA complex. (2002) (108)
A systematic method for studying the spatial distribution of water molecules around nucleic acid bases. (1993) (103)
The Protein Data Bank (PDB) | NIST (2002) (102)
Hydration of DNA bases: Analysis of crystallographic data (1992) (101)
Hydration of DNA: take 2 (1994) (101)
Structure of a dinucleoside phosphate–drug complex as model for nucleic acid–drug interaction (1977) (100)
OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive. (2017) (98)
Analysis of local helix bending in crystal structures of DNA oligonucleotides and DNA-protein complexes. (1995) (98)
The protein structure initiative structural genomics knowledgebase (2008) (97)
Hydration of DNA (1991) (92)
The structure of a pseudo intercalated complex between actinomycin and the DNA binding sequence d(GpC) (1982) (90)
The chemical composition of normal human red blood cells, including variability among centrifuged cells. (1955) (87)
Seven basic conformations of nucleic acid structural units (1973) (87)
Large macromolecular complexes in the Protein Data Bank: a status report. (2005) (86)
Netropsin, a DNA-binding oligopeptide structural and binding studies. (1979) (85)
The RCSB PDB “Molecule of the Month”: Inspiring a Molecular View of Biology (2015) (84)
The crystal structures of the a' and forms of D-mannitol (1968) (84)
Trendspotting in the Protein Data Bank (2013) (83)
The effect of potassium deficiency on carbohydrate metabolism. (1950) (81)
Three-dimensional EM structure of an intact activator-dependent transcription initiation complex (2009) (78)
The RNA Ontology Consortium: an open invitation to the RNA community. (2006) (78)
Crystal studies of B-DNA: the answers and the questions. (1997) (77)
Management of refractory cases of catastrophic antiphospholipid syndrome. (2011) (77)
Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB. (2013) (75)
PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models. (2017) (75)
Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules. (2018) (75)
The future of the Protein Data Bank. (2013) (75)
Pediatric catastrophic antiphospholipid syndrome: descriptive analysis of 45 patients from the "CAPS Registry". (2014) (73)
The Macromolecular Crystallographic Information File (mmCIF) (2001) (73)
The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods (2011) (71)
Metabolic syndrome in Argentinean patients with systemic lupus erythematosus (2009) (69)
An analysis of the relationship between hydration and protein-DNA interactions. (1998) (68)
Aromatic hydrogen bond in sequence-specific protein DNA recognition (1996) (66)
Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: alteration of DNA binding specificity through alteration of DNA kinking. (2001) (65)
Metabolism of rat granular pneumocytes isolated in primary culture. (1980) (64)
Conformational effects of Gly-X-Gly interruptions in the collagen triple helix. (2006) (62)
Outcome of a workshop on archiving structural models of biological macromolecules. (2006) (59)
Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop. (2016) (58)
Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: DNA binding specificity based on energetics of DNA kinking. (2001) (56)
The crystal structure of a trisaccharide, raffinose pentahydrate. (1970) (56)
Anomeric Bond-Character in the Pyranose Sugars (1967) (55)
Nucleic acid conformation: crystal structure of a naturally occurring dinucleoside phosphate (UpA). (1971) (55)
DNAproDB: an interactive tool for structural analysis of DNA–protein complexes (2017) (55)
A molecular model for proflavine-DNA intercalation. (1988) (53)
Crystal and molecular structure of a chiral-specific DNA-binding agent: tris(4,7-diphenyl-1,10-phenanthroline)ruthenium(II) (1986) (51)
Drug-nucleic acid interactions: conformational flexibility at the intercalation site. (1978) (48)
Structural studies of a new antitumor agent: tiazofurin and its inactive analogues (1983) (48)
EFFECT OF POTASSIUM DEFICIENCY ON CARBON DIOXIDE, CATION, AND PHOSPHATE CONTENT OF MUSCLE (1952) (48)
Molecular and crystal structure of an intercalation complex: Proflavine–cytidylyl‐(3′,5′)‐guanosine (1979) (47)
The Worldwide Protein Data Bank (2012) (46)
Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps. (2006) (46)
The crystal and molecular structure of L-azetidine-2-carboxylic acid. A naturally occurring homolog of proline. (1969) (44)
X-ray crystallographic studies of nucleic acids and nucleic acid-drug complexes. (1983) (42)
Validation of protein structures for protein data bank. (2003) (42)
The crystal structure of methyl a-D-glucopyranoside (1968) (42)
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge (2021) (40)
Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data (2018) (40)
DNAproDB: an expanded database and web-based tool for structural analysis of DNA–protein complexes (2019) (39)
Crystal and molecular structure of a DNA duplex containing the carcinogenic lesion O6-methylguanine. (1990) (39)
Integrin-collagen complex: a metal-glutamate handshake. (2000) (39)
Signatures of protein-DNA recognition in free DNA binding sites. (2009) (38)
NMR Exchange Format: a unified and open standard for representation of NMR restraint data (2015) (37)
How community has shaped the Protein Data Bank. (2013) (36)
Macromolecular Crystallographic Information File. (1997) (35)
Crystal and molecular structure of a DNA fragment: d(CGTGAATTCACG). (1991) (35)
Promoting a structural view of biology for varied audiences: an overview of RCSB PDB resources and experiences (2010) (35)
Representation of viruses in the remediated PDB archive (2008) (34)
Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB). (2019) (34)
Iodide mumps due to low-osmolality contrast material. (1992) (33)
Treatment of colorectal hepatic metastases by intrahepatic chemotherapy alone or as an adjuvant to complete or partial removal of metastatic disease. (1986) (32)
The Impact of Structural Genomics on the Protein Data Bank (2004) (32)
The crystal structure of galactitol. (1968) (31)
Design of a data model for developing laboratory information management and analysis systems for protein production (2004) (31)
Crystal structure of a DNA decamer showing a novel pseudo four-way helix-helix junction. (1995) (30)
The archiving and dissemination of biological structure data. (2016) (30)
Nucleic acid crystallography: a view from the nucleic acid database. (1996) (30)
Macromolecular dictionary (mmCIF) (2006) (30)
Crystal and molecular structure of a DNA fragment containing a 2-aminoadenine modification: the relationship between conformation, packing, and hydration in Z-DNA hexamers. (1992) (29)
The crystal and molecular structure of the anticancer drug actinomycin D—some explanations for its unusual properties (1988) (29)
Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank (2014) (28)
Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. (2019) (27)
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (2007) (27)
Disrupted collagen architecture in the crystal structure of a triple-helical peptide with a Gly-->Ala substitution. (1996) (27)
Monte Carlo studies on water in the dCpG/proflavin crystal hydrate. (1983) (27)
The Protein Data Bank and lessons in data management (2004) (26)
RCSB Protein Data Bank: Sustaining A Living Digital Data Resource That Enables Breakthroughs In Scientific Research And Biomedical Education (2018) (26)
Determination of the anomeric configuration of 2′‐deoxy‐D‐ribonucleosides by 1H NMR and by crystallographic studies of a novel 2′‐deoxy C‐nucleoside (1981) (26)
Quality control in databanks for molecular biology. (2000) (25)
Statistical models for discerning protein structures containing the DNA-binding helix-turn-helix motif. (2003) (24)
Evolving data standards for cryo-EM structures (2020) (24)
Impact of Comorbidity on Physical Function in Patients With Ankylosing Spondylitis and Psoriatic Arthritis Attending Rheumatology Clinics: Results From a Cross‐Sectional Study (2020) (23)
General characteristics of an early arthritis cohort in Argentina. (2011) (23)
The 2010 cryo‐em modeling challenge (2012) (22)
Crystal and molecular structure of a caged polycyclic tetraoxycarbophosphorane, (PO4C)(C6H5CN)(CF3)2(C6H9) (1973) (22)
Realism about PDB (2007) (20)
New guidelines for deposition of nucleic acid structures. (1995) (20)
The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: a structural biology web resource (2012) (20)
Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction (2011) (20)
The Protein Data Bank: A Case Study in Management of Community Data (2004) (20)
The Nucleic Acid Database: A resource for nucleic acid science. (1998) (19)
A second determination of the structure of hydroxyurea. (1967) (19)
Crystal and molecular structure of a new Z-DNA crystal form: d[CGT(2-NH2-A)CG] and its platinated derivative. (1996) (19)
Molecular dynamics simulation of a deoxydinucleoside-drug intercalation complex: dCpG/proflavin (1990) (18)
Low temperature structures of dCpG-proflavine. Conformational and hydration effects. (1992) (18)
Archiving and disseminating integrative structure models (2019) (18)
Checking nucleic acid crystal structures. (2001) (18)
Crystallization and preliminary X-ray study of a complex between d(ATGCAT) and actinomycin D. (1984) (18)
The structure of the ribodinucleoside monophosphate guanylyl‐3',5'‐cytidine as its ammonium octahydrate salt (1983) (17)
DCC: a Swiss army knife for structure factor analysis and validation (2016) (17)
Chapter 4:Indirect Readout of DNA Sequence by Proteins (2008) (17)
Crystallographic evidence for C alpha-H...O=C hydrogen bonds in a collagen triple helix. (1996) (17)
Patterns of hydration in crystalline collagen peptides. (1998) (16)
Can inherited thrombophilia modulate the clinical phenotype of patients with antiphospholipid syndrome? (2013) (16)
Insights from 20 years of the Molecule of the Month (2020) (16)
THE TREATMENT OF BENIGN GIANT-CELL TUMORS OF THE VERTEBRAE BY IRRADIATION. (1964) (16)
Chemical annotation of small and peptide-like molecules at the Protein Data Bank (2013) (16)
Doppler diagnosis of subclavian steal due to arteriovenous hemodialysis fistula in the ipsilateral arm. (1989) (15)
Crystal and molecular structure of oxyphosphoranes. 9. The spiropentaoxyphosphorane, 2-phenoxy-2,2-o-phenylenemethyl)-2,2-dihydro-1,3,2-dioxaphospholene (1977) (15)
E. coli trp repressor forms a domain-swapped array in aqueous alcohol. (2004) (15)
Crystal structure of formycin 5'-phosphate: an explanation for its tight binding to AMP nucleosidase. (1988) (15)
PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology. (2022) (15)
A systematic study of patterns of hydration in nucleic acids:(I) guanine and cytosine. (1988) (15)
Open-access data: A cornerstone for artificial intelligence approaches to protein structure prediction. (2021) (14)
Studies concerning the role of the adrenal cortex in the pathologic physiology of diabetic acidosis. II. The identification of adrenal-conditioned factors in the physiologic reaction to the stress of insulin deprivation. (1954) (14)
The crystal structure of ?-D-gulonolactone (1971) (14)
Structure of an interleukin-1 beta mutant with reduced bioactivity shows multiple subtle changes in conformation that affect protein-protein recognition. (1993) (14)
THE SYNTHESIS OF 4-AMINO-8-(BETA-D-RIBOFURANOSYL)-AMINOPYRIMIDO(5,4-D)PYRIMIDINE FROM A PURINE NUCLEOSIDE, A NOVEL REARRANGEMENT OF THE OURINE RING (1973) (14)
Maximum A posteriori classification of DNA structure from sequence information. (1998) (14)
Hydrogen bonding in biological structures. G. A. Jeffrey and W. Saenger (1993) (13)
Modified bases in tRNA: the structures of 5-carbamoylmethyl- and 5-carboxymethyl uridine. (1978) (13)
Structure of a new crystal form of a DNA dodecamer containing T.(O6Me)G base pairs. (1995) (13)
Crystal structure of a mispaired dodecamer, d(CGAGAATTC(O6Me)GCG)2, containing a carcinogenic O6-methylguanine (1994) (12)
A crystallographic determination of a chemical structure: 6-amino-10-(beta-D-ribofuranosylamino)pyrimido-[5,4-d]pyrimidine, an example of an unusual D-ribose conformation. (1975) (12)
Guided direct antegrade puncture of the superficial femoral artery. (1986) (12)
Data to knowledge: how to get meaning from your result (2015) (12)
Modelling of Drug-Nucleic Acid Interactions Intercalation Geometry of Oligonucleotides (1979) (12)
Crystallization, X‐ray studies, and site‐directed cysteine mutagenesis of the DNA‐binding domain of OmpR (1996) (11)
Some new aspects of actinomycin D-nucleic acid binding. (1983) (11)
The past and future of structure databases. (1999) (11)
The mmCIF dictionary: community review and final approval (1996) (11)
Safeguarding the integrity of protein archive (2010) (11)
Ternary Pt(II)-amino acid-nucleotide complexes: kinetics of formation (1994) (11)
Minimally invasive devascularization for variceal bleeding that could not be controlled with sclerotherapy. (1988) (11)
Metabolic competition between desoxy-corticosterone acetate and strophanthin-G in the rat. (1954) (11)
RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank (2014) (11)
Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students (2022) (10)
New system for archiving integrative structures (2021) (10)
Alpha-S-cysteinylthymine: a model for protein-nucleic acid cross-linking. (1976) (10)
Quality assurance for the query and distribution systems of the RCSB Protein Data Bank (2011) (10)
Model compounds for protein nucleic acid interactions. 3. Synthesis and structure of a nucleoside dipeptide, N-(9-beta-D-ribofuranosylpurin-6-yl)glycyl-L-alanine sesquihydrate. (1976) (10)
Hydration of Nucleic Acid Crystals a (1986) (10)
Erratum: Structure of the CAP-DNA complex at 2.5 Å resolution: A complete picture of the protein-DNA Interface (Journal of Molecular Biology (1996) 260:3 (395-408)) (2011) (10)
Alkylation of a tripeptide by a carcinogen: the crystal structures of sarcosylglycylglycine, 9-methyl-10-chloromethylanthracene, and their reaction product. (1977) (10)
Aggregation of acridine orange: crystal structure of acridine orange tetrachlorozincate 2C17H19N3-2HCl-ZnCl2-CH3COOH. (1976) (10)
The data universe of structural biology (2020) (9)
Crystallization and preliminary X-ray studies of recombinant human granulocyte-macrophage colony stimulating factor. (1989) (9)
Characterization of a monoclinic crystal form of an enzyme of steroid metabolism, Δ5-3-ketosteroid isomerase☆ (1976) (9)
Data deposition and annotation at the worldwide protein data bank. (2008) (9)
The crystal structure of ICR-170-OH an analogue of an antitumor agent and mutagen (1972) (9)
Harnessing knowledge from structural genomics. (2008) (9)
The crystal and molecular structure of N-methyl-N-t-butyl-3-hydroxyazetidinium methanesulfonate, a nonplanar azetidinium ring. (1969) (8)
The evolution of the RCSB Protein Data Bank website (2011) (8)
Protein Structures: From Famine to Feast (2002) (8)
Faculty Opinions recommendation of Hachimoji DNA and RNA: A genetic system with eight building blocks. (2019) (8)
Crystal structure of an antiviral agent 5-(N-(L-phenylalanyl)amino) uridine. (1973) (8)
Erratum to "Structure of the CAP-DNA Complex at 2.5 Å Resolution: A Complete Picture of the Protein-DNA Interface" (J. Mol. Biol. 260/3 (1996) 395-408) (2011) (7)
CIF Applications. XI. A La Mode: a ligand and monomer object data environment. I. Automated construction of mmCIF monomer and ligand models (1999) (7)
Pancreas divisum with pancreatitis and pseudocyst. (1984) (7)
Outcomes of the 2019 EMDataResource model challenge: validation of cryo-EM models at near-atomic resolution (2020) (7)
Crystal structures of fragments of DNA and RNA (1981) (7)
The mineral and water composition of human red blood cells in diabetic acidosis and during recovery with special reference to changes in potassium content. (1960) (7)
How the Protein Data Bank changed biology: An introduction to the JBC Reviews thematic series, part 1 (2021) (7)
Crystallographic studies of D-xylose isomerase. (1974) (7)
Fundamentals of DNA and RNA structure. (2003) (6)
The structure of a hydrated 1:2 complex of adenylyl(3'‐5')adenosine–proflavine hemisulphate (1982) (6)
Reply to: Building meaningful models of glycoproteins (2007) (6)
The use of mmCIF architecture for PDB data management (2006) (6)
How is the ultrasound in rheumatology used, implemented, and applied in Latin American centers? Results from a multicenter study (2016) (6)
A structural model for sequence-specific proflavin-DNA interactions during in vitro frameshift mutagenesis. (1992) (6)
Structure of a rearrangement product: 1-methyl-3-(5-amino-1-benzylimidazol-4-yl)-1,2,4-triazole, C13H14N6 (1987) (6)
Classification and use of macromolecular data (2006) (6)
The wwPDB common tool for deposition and annotation (2011) (6)
Specification of a relational dictionary definition language (DDL2) (2006) (6)
Magnetic resonance imaging of dissection in pseudocoarctation of the aorta (1993) (6)
Refinement strategies for protein–nucleic acid complexes (1996) (6)
CRYSNET, a crystallographic computing network with interactive graphics display. (1974) (6)
MODEL COMPOUNDS FOR PROTEIN‐NUCLEIC ACID INTERACTIONS. 5. 5‐S‐CYSTEINYLURACIL L MONOHYDRATE, A PHOTOADDITION PRODUCT BETWEEN AN AMINO ACID AND PYRIMIDINE BASE (1977) (5)
Synergies between the Protein Data Bank and the community (2021) (5)
The crystal structures of the alpha and beta forms of D-mannitol. (1968) (5)
Archiving of Integrative Structural Models. (2018) (5)
Revealing structural views of biology. (2013) (5)
A Monte Carlo simulation study of the aqueous hydration of r(GpC)2: Comparison with crystallographic ordered water sites (1990) (5)
Crystal structure of tetrahymanol hemihydrate. (1977) (4)
The Protein Data Bank (PDB) and the Worldwide PDB http://www.wwpdb.org (2005) (4)
Splenic artery and coronary vein occlusion for bleeding esophageal varices (1984) (4)
PDB 40 : The Protein Data Bank Celebrates its 40 th Birthday (4)
Comment on On the propagation of errors by Jaskolski (2013) (2013) (4)
The crystal structure of d‐isoascorbic acid (1972) (4)
Electron microscopy holdings of the Protein Data Bank: the impact of the resolution revolution, new validation tools, and implications for the future (2022) (4)
Anticipating innovations in structural biology (2018) (4)
The crystal structure of potassium dihydrogen trans-aconitate (1972) (4)
The crystal structure of d-iso-ascorbic acid. Errata (1973) (4)
The Protein Data Bank: Overview and Tools for Drug Discovery (2015) (4)
Conformational principles of nucleic acids (1981) (4)
A technique for reforming the Simmons curved cerebral catheters. (1982) (4)
The RCSB Protein Data Bank: site functionality and bioinformatics use cases (2011) (3)
Creating a community resource for protein science (2012) (3)
Structural Databases of Biological Macromolecules (2012) (3)
Model compounds for protein nucleic acid interactions. IV. Crystal structure of a nucleoside peptide with anti‐viral properties: 5‐[N‐(l‐leucyl)amino]uridine (1977) (3)
Frequency of human leukocyte antigens class II-DR alleles (HLA-DRB1) in Argentinian patients with early arthritis (2018) (3)
AN OVERVIEW OF STRUCTURAL STUDIES OF THE COLLAGEN TRIPLE HELIX (2013) (3)
Berman, Henrick, Nakamura & Arnold respond [2] (2006) (3)
A simplified method for antegrade sheath introduction into the common femoral artery. (1982) (3)
Crystallographic quaternary structural analysis of AMP nucleosidases from Escherichia coli and Azotobacter vinelandii. (1989) (3)
The structure of S-8-azaadenosyl-l-homocysteine (8-aza-SAH): a synthetic methyltransferase inhibitor (1982) (3)
Crystallization and preliminary X-ray study of AMP nucleosidase. (1986) (3)
Establishing the Next Generation of the Protein Data Bank (2014) (3)
A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction (2004) (3)
Refinement of the structures of potassium hydrogen isocitrate lactone (1973) (3)
Ontologies for three-dimensional molecular structure (2004) (3)
Crystal structure and nmr conformation of a cyclic pseudotetrapeptide containing urethane backbone linkages (1994) (3)
Crystal and Molecular Structure of a Chiral-Specific DNA-Binding Agent: Tris(4,7-diphenyl-l,10-phenanthroline)ruthenium(II). (1986) (3)
WORKSHOP ON THE VALIDATION AND MODELING OF ELECTRON CRYO-MICROSCOPY STRUCTURES OF BIOLOGICAL NANOMACHINES (2011) (3)
The structure of S‐adenosyl‐l‐homocysteine 2.5‐hydrate (1982) (3)
DRUGS WITH NUCLEIC ACIDS (1981) (2)
Typhoid fever in the previously immunised. (1968) (2)
The Nucleic Acid Database: Present and Future (1996) (2)
Reply to "Giving credit where credit is due" (2005) (2)
The macromolecular CIF dicitionary (1993) (2)
2-[3-(7-Chloro-2-methoxy-10-[benzo(b)-1,5-naphthyridinyl]amino)propylamino]ethanol (ICR-372-OH) (1975) (2)
ModelCIF: An extension of PDBx/mmCIF data representation for computed structure models (2022) (2)
Oxidation of sn-glycerol-3-phosphate and acetyl L-carnitine by rat and rabbit alveolar macrophages. (1979) (2)
STRUCTURAL STUDIES OF A NEW ANTITUMOR AND ANTIVIRAL AGENT: SELENAZOFURIN AND ITS α ANOMER (1985) (2)
3.6. Classification and Use of Macromolecular Data Appendix 3.6.2 the Protein Data Bank Exchange Data Dictionary A3.6.2.1. Data Exchange and Format Translation (2007) (2)
Modification of the Cope drainage catheter to facilitate placement. (1986) (2)
Crystal structure of a mispaired dodecamer, d(CGAGAATTC(O6Me)GCG)2, containing a carcinogenic O6-methylguanine. (1994) (2)
A data dictionary for archiving integrative/hybrid models (2017) (2)
MODEL COMPOUNDS FOR PROTEIN NUCLEIC ACID INTERACTIONS. 4. SYNTHESIS AND STRUCTURE OF A NUCLEOSIDE DIPEPTIDE, N‐(9‐β‐D‐RIBOFURANOSYLPURIN‐6‐YL)GLYCYL‐L‐ALANINE‐WATER (1 1.5) (1977) (2)
Developing Community Resources for Nucleic Acid Structures (2022) (2)
The evolution of the Protein Data Bank (2011) (2)
Protein Data Bank Project at Rutgers University (2002) (2)
Assessing the quality of macromolecular structures (2006) (2)
Protein-DNA Interactions (1999) (2)
A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction (2005) (2)
CRYSTALLOGRAPHIC LEGACY OF NED SEEMAN. (2022) (1)
BioSync: an online resource for X-ray facilities worldwide (2017) (1)
Solution of UpA Structure (1972) (1)
The crystal structure of a uracil-acetone photoaddition product. (1975) (1)
Comment on Timely deposition of macromolecular structures is necessary for peer review by Joosten et al. (2013) (2013) (1)
ALKYLATION OF A TRIPEPTIDE BY A CARCINOGEN- THE CRYSTAL STRUCTURES OF SARCOSYLGLYCYLGLYCINE, 9-METHYL-10-CHLOROMETHYLANTHRACENE, AND THEIR REACTION PRODUCT (1977) (1)
CRYSTAL STRUCTURE OF THE TRIPLE-HELICAL COLLAGEN-LIKE PEPTIDE, (PRO-HYP-GLY)4-GLU-LYS-GLY(PRO-HYP-GLY)5 (2000) (1)
Model compounds for protein-nucleic acid interactions. 5.1a 5-S-cysteinyluracil monohydrate, a photoaddition product between an amino acid and pyrimidine base. (1977) (1)
Response to On prompt update of literature references in the Protein Data Bank (2014) (1)
Protein structure annotation resources. (2015) (1)
The Nucleic Acid Database. (2012) (1)
RCSB Protein Data Bank: Views of structural biology for basic and applied research (2016) (1)
The PDB Data Uniformity Project | NIST (2001) (1)
Development of a Prototyp e System for Archiving Integrative / Hybrid Structure Models of Biological Macromolecules Graphical (2018) (1)
A new visual design language for biological structures in a cell. (2022) (1)
Protein Structures : From Famine to Feast Thousands of protein structures are known and accessible . Structural genomics is building on new technology to fill in the missing pieces . (1)
Insights from 20 Years of the Molecule of the Month and PDB‐101 (2020) (1)
The Protein Data Bank: Unifying the Archive | NIST (2002) (1)
Platinum(II) triamine complexes: cis-[PtCl(NH3)2(C10H13N5O5)]NO3.2H2O and [PtCl(C2H8N2)(C4H6N2)]NO3. (1994) (1)
Orthotopic liver transplantation for secondary sclerosing cholangitis associated with hepatic artery embolization. (1992) (1)
Replacing the broken suture in the Cope-style loop retention catheter. (1986) (1)
Treatment of a common duct stone via transhepatic approach (2005) (1)
A quantitative spinal fluid glucose micromethod for the pediatric ward laboratory. (1949) (1)
Open access to research artifacts: Implementing the next generation data management plan (2019) (1)
Red cell, plasma and muscle composition in thirty human subjects (1953) (1)
Task Force Report on Catastrophic Antiphospholipid Syndrome (2012) (1)
Reply to: Is one solution good enough? (2006) (1)
The Need for Dictionaries, Ontologies, and Controlled Vocabularies (2003) (1)
FRI0483 Work capacity and quality of life in a cohort of patients with early psoriatic arthritis in argentina (2017) (1)
Cuba's free medical education for US students (2001) (1)
How the Protein Data Bank changed biology: An introduction to the JBC Reviews thematic series, part 2 (2021) (1)
How the PDB uses mmCIF (2002) (0)
Theory, in Symmetries and Properties of Non-Rigid Molecules: A Comprehensive (0)
2019 EMDataResource Model Metrics Challenge Dataset (2020) (0)
Outcomes of the Cryo-EM Map and Model Challenges (2019) (0)
Educational Outreach and User Training at the Worldwide Protein Data Bank (2014) (0)
X-ray crystallographic studies of collagen-like peptides (1996) (0)
CONFIGURATION OF WOBBLE PAIRS WITH PURINE-TYPE BASES AS ANTICODON WOBBLE BASES: SIGNIFICANCE FOR THE GENETIC CODE IV.1 Introduction (2012) (0)
Faculty Opinions recommendation of Visualization and analysis of non-covalent contacts using the Protein Contacts Atlas. (2019) (0)
CRYSTAL STRUCTURE OF SUBTILISIN-PROPEPTIDE COMPLEX (1998) (0)
Characterization of monoclinic crystal form of an enzyme of steroid metabolism, delta5-3-ketosteroid isomerase. (1976) (0)
What Protein Data Bank tells us about the past, present, and future of structural biology (2008) (0)
Small-angle scattering data representation in SASCIF and integrative/hybrid methods dictionary (2017) (0)
Chapter 21.2 Assessing the quality of macromolecular structures (2012) (0)
Faculty Opinions recommendation of Make scientific data FAIR. (2019) (0)
X‐Ray Structures of Nucleic Acids (2006) (0)
PROTEIN NUCLEIC ACID INTERACTIONS GRANT # DE-FG02-96ER62166 FINAL REPORT (2005) (0)
Generalized database support (2006) (0)
Structural Biology Knowledgebase: a biologists resource for protein structure and sample information (2012) (0)
Structure of N-[1'(9-adenyl)-β-d-ribofuranuronosyl]-l-phenylalanine water ethanol (1/0.5/0.25), C19H20N6O6.0.5H2O.0.25C2H6O (1985) (0)
Evolving data standards for cryo electron microscopy (2019) (0)
E. Coli Trp Apo-Repressor, Monoclinic Crystal Form (2004) (0)
How the RCSB validates PDB structures (2005) (0)
A Data Dictionary and Prototype Deposition System for Archiving Integrative/Hybrid Models (2018) (0)
73rd Meeting — American College of Rheumatology (ACR) 44th Meeting — Association of Rheumatology Health Professionals (ARHP) (2009) (0)
The PSI SGKB Technology Portal - An Online Database of Structural Genomics Technologies (2010) (0)
Drug-nucleic acidinteractions: Conformational flexibility attheintercalation site (1978) (0)
STRUCTURAL STUDIES OF A NEW ANTITUMOR AGENT: TIAZOFURIN AND ITS INACTIVE ANALOGS (1984) (0)
Data quality in the PDB archive (2008) (0)
Introduction to macromolecular crystallography: McPherson, A. (2003) (0)
Faculty Opinions recommendation of Porous crystals as scaffolds for structural biology. (2020) (0)
STRUCTURAL CONSEQUENCES OF A DISCONTINUITY IN THE REPEATING TRIPEPTIDE SEQUENCE OF A COLLAGEN-LIKE TRIPLE-HELICAL PEPTIDE (2003) (0)
CRYSTAL STRUCTURE OF TETRAHYMANOL HEMIHYDRATE (1977) (0)
Discussion of the Paper (1994) (0)
Representing macromolecular structure data (2006) (0)
E. coli trp aporepressor (2011) (0)
Protein crystallography in drug discovery (2004) (0)
Structural Biology Knowledgebase: An Integrated Resource for Modern Biologists (2014) (0)
The crystal structure of 10‐chloromethyl‐2,3,9‐trimethylanthracene (1972) (0)
(drug intercalation/nucleotide conformation/computer model- (2016) (0)
PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES (2001) (0)
Drug-nucleic acid complexes: an overview (1981) (0)
SUGAR STRUCTURES IN DINUCLEOSIDE PHOSPHATE - DRUG COMPLEXES (1981) (0)
CRYSTALLOGRAPHIC STUDIES OF A DODECAMER B-DNA D-(GCAAACGTTTGC)2 (2003) (0)
27 Analysis of DNA deformations in transcription factor–DNA complexes (2015) (0)
Supporting other data formats and data delivery methods (2006) (0)
Anatomy of a molecular graphics program (1988) (0)
Structure of the E. coli alpha C-terminal domain of RNA polymerase in complex with CAP and DNA (2002) (0)
Surveying and classifying nucleic acid structures (1996) (0)
Community-building challenges for the Protein Data Bank (2017) (0)
Workshop Introduction (2011) (0)
The Structural Biology Knowledgebase - search Online for Protein Sequences, Structures, Functions, Methods and More (2011) (0)
Treatment of variceal hemorrhage. (1991) (0)
The Members of the House of Representatives participating as amici include (2011) (0)
Computational Separation of Conformational Heterogeneity using Cryo-Electron Tomography and 3D Sub-Volume Averaging (2013) (0)
The PSI structural genomics knowledgebase (2008) (0)
5'-D(*GP*CP*AP*GP*AP*CP*GP*TP*CP*TP*GP*C)-3' Methionine Repressor binding site (2005) (0)
DNA-binding domain of OmpR, a difficult structure determination (1996) (0)
Faculty Opinions recommendation of CryoEM at 100 keV: a demonstration and prospects. (2019) (0)
THU0278 Rituximab in Catastrophic Antiphospholipid Syndrome: A Potential Therapeutic Option (2013) (0)
Crystal structure of a mispaired dodecamer, d(CGAGAATTC(O{sup 6}Me)GCG){sub 2}, containing a carcinogenic O{sup 6}-methylguanine. (1994) (0)
CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE (1997) (0)
Remarks by Congressman Howard L. Berman (1996) (0)
A new, extra-long vascular sheath. (1988) (0)
N-TERMINAL FRAGMENT OF NS1 PROTEIN FROM INFLUENZA A VIRUS (1997) (0)
Sindrome antifosfolipidico catastrófico: análisis de situaciones especiles complejas (2014) (0)
Spontaneous resolution of apparent radiation associated retroperitoneal fibrosis. (2011) (0)
4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6A;17T]ICAP38 DNA (2006) (0)
Letters to the editor (1969) (0)
DETERMINATION OF THE ANOMERIC CONFIGURATION OF 2′-DEOXY-D-RIBONUCLEOSIDES BY PROTON NMR AND BY CRYSTALLOGRAPHIC STUDIES OF A NOVEL 2′-DEOXY C-NUCLEOSIDE (1982) (0)
EXTENSIONS OF REMARKS 30516 November 17 , 1999 EXTENSIONS OF REMARKS COMPETITION IN THE U . S .-CHINA (2016) (0)
Readily available obturator for 13 French steerable biliary catheter. (1981) (0)
Metothrexate Plus Leflunomide Step-Up Therapy in Early Rheumatoid Arthritis Patients with Non-Response to Initial Methotrexate Monotherapy (2019) (0)
TREATMENT OF VARICEAL HEMORRHAGE. AUTHORS' REPLY (1991) (0)
Little guarantee, much controversy. (1978) (0)
Imaging in hepatobiliary disease. By J. Dooley, R. Dick, M. Viamonte and S. Sherlock, 245 pp. Oxford: Blackwell Scientific Publications, 1987. $111.50 (1988) (0)
Chapter 16 Archiving of Integrative Structural Models (2019) (0)
The Structural Biology Knowledgebase – structures, functions, methods and more (2011) (0)
E F F E C T OF POTASSIUM D E F I C I E N C Y ON CARBON DIOXIDE, CATION, AND PHOSPHATE CONTENT OF-MUSCLE* WITH A NOTE ON THE CARBON DIOXIDE CONTENT OF HUMAN MUSCLE BY LYTT (2003) (0)
Archiving Integrative Structural Models (2021) (0)
Archiving of Integrative/Hybrid Structural Models (2019) (0)
CATION, AND PHOSPHATE CONTENT OF-MUSCLE* WITH A NOTE ON THE CARBON DIOXIDE CONTENT OF HUMAN MUSCLE BY LYTT I. GARDNER,:~ ELSIE A. MAcLACHLAN, AND HELEN BERMAN (2003) (0)
Total body exchangeable and erythrocyte potassium measurements in children with the nephrotic syndrome. (1952) (0)
Crystal Structure of Domain Swapped trp Aporepressor in 30%(v/v) Isopropanol (2003) (0)
The Nucleic Acid Database (NDB) (2006) (0)
AB0342 OBSTETRIC AND THROMBOTIC ANTIPHOSPHOLIPID SYNDROME: ARE THEY DIFFERENT ENTITIES? (2021) (0)
Integrated data-processing system: overview (2006) (0)
Early history of the Protein Data Bank and the evolution of the Nucleic Acid Database (1996) (0)
PSI SBKB Technology Portal: A Structural Biology Web Resource (2015) (0)
mmCIF applications at the RCSB Protein Data Bank (2005) (0)
The Crystal Structure of a Trisaeeharide, Raffmose Pentahydrate (1970) (0)
HOW TO USE THE PSI STRUCTURAL GENOMICS KNOWLEDGEBASE TO ENABLE RESEARCH (2010) (0)
RNA structure. (1977) (0)
Abstracts from the Group for Research and Assessment of Psoriasis and Psoriatic Arthritis (GRAPPA) Trainees Symposium (2013) (0)
PDB as a public resource for enabling protein science (2013) (0)
New online curriculum: the PDB pipeline and data archiving (2018) (0)
Figure 5.5.3.3 (2006) (0)
Metabolic syndrome in Argentinean patients with systemic lupus erythematosus. (2015) (0)
Future structural genomics initiatives: an interview with Helen Berman, director of the Protein Data Bank. Interview by Wendy A Warr. (2008) (0)
The wwPDB and future perspectives in sharing macromolecular data (2011) (0)
The wwPDB working format: a simplified application of CIF technology (2011) (0)
Soma Mandal Graduate Assistant (0)
Basics of Nucleic Acid Structure (2006) (0)
Using the Tools and Resources of the RCSB Protein Data Bank (2005) (0)
Faculty Opinions recommendation of Molecular Graphics: Bridging Structural Biologists and Computer Scientists. (2019) (0)
E. coli trp aporeporessor L75F mutant (2011) (0)
The new Nucleic Acid Database Atlas (2002) (0)
Nucleosidases from Escherichia coli and Azotobacter uineZandii* (2001) (0)
A New Visual Design Language for Biological Structures in a Cell (2021) (0)
The history of the PDB as a public resource for enabling science (2014) (0)
Archiving and disseminating integrative structure models (2019) (0)
Deposition of data with the Nucleic Acid Database (1996) (0)
Chapter 4 – X-RAY CRYSTALLOGRAPHY OF BIOLOGICAL MOLECULES (1974) (0)
Educational Resources for Structural Biology at the RCSB Protein Data Bank (2006) (0)
5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3' Zif268 binding site (2005) (0)

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