Hervé Philippe
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Hervé Philippebiology Degrees
Biology
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Anatomy
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Evolutionary Biology
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Biology
Why Is Hervé Philippe Influential?
(Suggest an Edit or Addition)Hervé Philippe's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Tunicates and not cephalochordates are the closest living relatives of vertebrates (2006) (1468)
- A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. (2004) (1355)
- A Simple and Robust Statistical Test for Detecting the Presence of Recombination (2006) (1142)
- Phylogenomics and the reconstruction of the tree of life (2005) (1141)
- Phylotranscriptomic analysis of the origin and early diversification of land plants (2014) (966)
- Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough (2011) (899)
- Phylogenomics Revives Traditional Views on Deep Animal Relationships (2009) (666)
- Phylogenomics: the beginning of incongruence? (2006) (612)
- Computing Bayes factors using thermodynamic integration. (2006) (596)
- Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model (2007) (568)
- The African coelacanth genome provides insights into tetrapod evolution (2013) (563)
- The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils? (2004) (550)
- Monophyly of Primary Photosynthetic Eukaryotes: Green Plants, Red Algae, and Glaucophytes (2005) (538)
- Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia. (2005) (537)
- Data access for the 1,000 Plants (1KP) project (2014) (474)
- A general comparison of relaxed molecular clock models. (2007) (437)
- Acoelomorph flatworms are deuterostomes related to Xenoturbella (2011) (410)
- The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba (2002) (403)
- Phylogenomics of eukaryotes: impact of missing data on large alignments. (2004) (396)
- A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals (2017) (378)
- Heterotachy, an important process of protein evolution. (2002) (345)
- Autochthonous eukaryotic diversity in hydrothermal sediment and experimental microcolonizers at the Mid-Atlantic Ridge (2003) (344)
- Species sampling has a major impact on phylogenetic inference. (1993) (338)
- Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships (2010) (322)
- Innate Immunity (1996) (320)
- Origin of land plants: Do conjugating green algae hold the key? (2011) (280)
- Detecting and overcoming systematic errors in genome-scale phylogenies. (2007) (280)
- Impact of missing data on phylogenies inferred from empirical phylogenomic data sets. (2013) (280)
- Genomic data do not support comb jellies as the sister group to all other animals (2015) (278)
- Heterotachy and long-branch attraction in phylogenetics (2005) (262)
- A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata (2011) (260)
- The Rooting of the Universal Tree of Life Is Not Reliable (1999) (259)
- Phylogeny: A non-hyperthermophilic ancestor for Bacteria (2002) (256)
- Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate (2010) (254)
- Early–branching or fast–evolving eukaryotes? An answer based on slowly evolving positions (2000) (247)
- Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles. (2010) (244)
- Ancient phylogenetic relationships. (2002) (243)
- The origin of red algae and the evolution of chloroplasts (2000) (240)
- Evidence for loss of mitochondria in Microsporidia from a mitochondrial-type HSP70 in Nosema locustae. (1997) (236)
- Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies. (1999) (234)
- Where is the root of the universal tree of life? (1999) (231)
- An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics. (2005) (227)
- 16S rRNA and 16S to 23S internal transcribed spacer sequence analyses reveal inter- and intraspecific Bifidobacterium phylogeny. (1996) (221)
- Improved Modeling of Compositional Heterogeneity Supports Sponges as Sister to All Other Animals (2017) (218)
- MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda (2011) (215)
- Bacterial mode of replication with eukaryotic-like machinery in a hyperthermophilic archaeon. (2000) (209)
- Additional molecular support for the new chordate phylogeny (2008) (202)
- Cnidarian phylogenetic relationships as revealed by mitogenomics (2013) (197)
- Can the Cambrian explosion be inferred through molecular phylogeny (1994) (191)
- Archaeal phylogeny based on ribosomal proteins. (2002) (187)
- Presence of a mitochondrial-type 70-kDa heat shock protein in Trichomonas vaginalis suggests a very early mitochondrial endosymbiosis in eukaryotes. (1996) (187)
- Phylotranscriptomic consolidation of the jawed vertebrate timetree (2017) (182)
- Genomic insights into the evolutionary origin of Myxozoa within Cnidaria (2015) (182)
- Toward Resolving the Eukaryotic Tree: The Phylogenetic Positions of Jakobids and Cercozoans (2007) (179)
- Horizontal gene transfer and phylogenetics. (2003) (176)
- SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics (2007) (163)
- Phylogeny of eukaryotes based on ribosomal RNA: long-branch attraction and models of sequence evolution. (2000) (162)
- Eubacterial phylogeny based on translational apparatus proteins. (2002) (161)
- The Root of the Tree of Life in the Light of the Covarion Model (1999) (154)
- Improvement of molecular phylogenetic inference and the phylogeny of Bilateria (2008) (150)
- Large-scale sequencing and the new animal phylogeny. (2006) (149)
- Comparison of molecular and paleontological data in diatoms suggests a major gap in the fossil record (1994) (149)
- ERV-L Elements: a Family of Endogenous Retrovirus-Like Elements Active throughout the Evolution of Mammals (1999) (145)
- An evaluation of elongation factor 1 alpha as a phylogenetic marker for eukaryotes. (1999) (144)
- Phylogenomic Insights into Animal Evolution (2015) (143)
- Lack of resolution in the animal phylogeny: closely spaced cladogeneses or undetected systematic errors? (2007) (143)
- Buddenbrockia Is a Cnidarian Worm (2007) (139)
- Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profiles (2010) (137)
- Pitfalls in supermatrix phylogenomics (2017) (136)
- Phylogenomic analyses predict sistergroup relationship of nucleariids and Fungi and paraphyly of zygomycetes with significant support (2009) (131)
- Serine codon-usage bias in deep phylogenomics: pancrustacean relationships as a case study. (2013) (131)
- The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome. (2000) (129)
- Acoel Flatworms Are Not Platyhelminthes: Evidence from Phylogenomics (2007) (127)
- Phylogeny of dermatophytes and dimorphic fungi based on large subunit ribosomal RNA sequence comparisons. (1994) (124)
- Evolution of the Archaea. (2002) (121)
- The new phylogeny of eukaryotes. (2000) (117)
- Reverse gyrase from hyperthermophiles: probable transfer of a thermoadaptation trait from archaea to bacteria. (2000) (115)
- Identification of putative chromosomal origins of replication in Archaea (1999) (110)
- Origin of land plants revisited in the light of sequence contamination and missing data (2012) (109)
- A phylogenomic framework and timescale for comparative studies of tunicates (2018) (106)
- Critical Analysis of Eukaryotic Phylogeny: A Case Study Based on the HSP70 Family (1999) (99)
- Site interdependence attributed to tertiary structure in amino acid sequence evolution. (2005) (98)
- Pyrococcus genome comparison evidences chromosome shuffling-driven evolution. (2002) (96)
- Opinion: long branch attraction and protist phylogeny. (2000) (95)
- Phylogenetic analyses of nuclear, mitochondrial, and plastid multigene data sets support the placement of Mesostigma in the Streptophyta. (2006) (93)
- Analysis of the African coelacanth genome sheds light on tetrapod evolution (2013) (92)
- What is the phylogenetic position of Cryptosporidium? (2000) (90)
- Phylogenomic analyses support the monophyly of Taphrinomycotina, including Schizosaccharomyces fission yeasts. (2008) (89)
- Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria (2019) (89)
- An evolutionary view of drug-receptor interaction: the bioamine receptor family. (1995) (88)
- How many nucleotides are required to resolve a phylogenetic problem? The use of a new statistical method applicable to available sequences. (1994) (85)
- Rodent monophyly: pitfalls of molecular phylogenies. (1997) (84)
- The potential value of indels as phylogenetic markers: position of trichomonads as a case study. (2002) (82)
- Difficult phylogenetic questions: more data, maybe; better methods, certainly (2011) (79)
- Environmental temperatures shape thermal physiology as well as diversification and genome-wide substitution rates in lizards (2019) (77)
- Inferring and validating horizontal gene transfer events using bipartition dissimilarity. (2010) (75)
- Phylogeny of Trichomonads Based On Partial Sequences of Large Subunit Rrna and On Cladistic Analysis of Morphological Data (1993) (74)
- A software tool ‘CroCo’ detects pervasive cross-species contamination in next generation sequencing data (2018) (72)
- Assessing site-interdependent phylogenetic models of sequence evolution. (2006) (72)
- Molecular phylogeny: pitfalls and progress. (2000) (71)
- Evaluating the usefulness of alignment filtering methods to reduce the impact of errors on evolutionary inferences (2019) (70)
- Unusually high evolutionary rate of the elongation factor 1 alpha genes from the Ciliophora and its impact on the phylogeny of eukaryotes. (1999) (70)
- Smr: a bacterial and eukaryotic homologue of the C-terminal region of the MutS2 family. (1999) (69)
- The major lines of metazoan evolution: summary of traditional evidence and lessons from ribosomal RNA sequence analysis. (1993) (67)
- Rooting the tree of life: the phylogenetic jury is still out (2015) (66)
- Site-specific time heterogeneity of the substitution process and its impact on phylogenetic inference (2011) (66)
- A Critical Study of Homoplasy in Molecular Data with the Use of a Morpholoogically Based Cladogram, and Its Consequences for Character Weighting (1996) (65)
- New insights into the phylogeny of eukaryotes based on ciliate Hsp70 sequences. (1998) (64)
- Rampant horizontal gene transfer and phospho-donor change in the evolution of the phosphofructokinase. (2003) (63)
- Four mismatch repair paralogues coexist in Arabidopsis thaliana: AtMSH2, AtMSH3, AtMSH6-1 and AtMSH6-2 (1999) (60)
- Sorghum phosphoenolpyruvate carboxylase gene family: structure, function and molecular evolution (1993) (59)
- State-of the art methodologies dictate new standards for phylogenetic analysis (2013) (59)
- A cnidarian parasite of salmon (Myxozoa: Henneguya) lacks a mitochondrial genome (2020) (58)
- The pitfalls of molecular phylogeny based on four species, as illustrated by the Cetacea/Artiodactyla relationships (1994) (58)
- Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). (2006) (58)
- Cloning and analysis of a Trichinella britovi gene encoding a cytoplasmic heat shock protein of 72 kDa (1999) (56)
- Functional divergence prediction from evolutionary analysis: a case study of vertebrate hemoglobin. (2003) (54)
- Uniformization for sampling realizations of Markov processes: applications to Bayesian implementations of codon substitution models (2008) (51)
- Statistical potentials for improved structurally constrained evolutionary models. (2010) (50)
- Computational methods for evaluating phylogenetic models of coding sequence evolution with dependence between codons. (2009) (48)
- The product of the mammalian orthologue of the Saccharomyces cerevisiae HBS1 gene is phylogenetically related to eukaryotic release factor 3 (eRF3) but does not carry eRF3‐like activity (1998) (47)
- Evaluation of the models handling heterotachy in phylogenetic inference (2007) (47)
- Animal phylogeny and large-scale sequencing: progress and pitfalls (2008) (46)
- Characterization and detection of plant trypanosomatids by sequence analysis of the small subunit ribosomal RNA gene. (1995) (46)
- The last universal common ancestor (LUCA), simple or complex? (1999) (45)
- Heterotachy and Functional Shift in Protein Evolution (2003) (44)
- The diversity of eukaryotes and the root of the eukaryotic tree. (2007) (44)
- An unusual choanoflagellate protein released by Hedgehog autocatalytic processing (2006) (43)
- Collodictyon triciliatum and Diphylleia rotans (=Aulacomonas submarina) form a new family of flagellates (Collodictyonidae) with tubular mitochondrial cristae that is phylogenetically distant from other flagellate groups. (2002) (43)
- Characterization and classification of plant cyclin sequences related to A- and B-type cyclins (1998) (43)
- Inferring the shallow phylogeny of true salamanders (Salamandra) by multiple phylogenomic approaches. (2017) (42)
- Lack of support for Deuterostomia prompts reinterpretation of the first Bilateria (2020) (40)
- Plastid Origin: Replaying the Tape (2006) (39)
- Molecular phylogenetic studies on Theileria parasites based on small subunit ribosomal RNA gene sequences. (1999) (38)
- Sure facts and open questions about the origin and evolution of photosynthetic plastids. (2001) (35)
- Consensus assessment of the contamination level of publicly available cyanobacterial genomes (2018) (34)
- A maximum likelihood framework for protein design (2006) (33)
- Reconstructing trait evolution in plant evo–devo studies (2019) (32)
- Evolution of eukaryotic translation elongation and termination factors: variations of evolutionary rate and genetic code deviations. (2002) (32)
- To What Extent Current Limits of Phylogenomics Can Be Overcome (2020) (32)
- Bayesian Comparisons of Codon Substitution Models (2008) (29)
- Composition strand asymmetries in prokaryotic genomes: mutational bias and biased gene orientation. (2001) (28)
- Horizontal transfers confuse the prokaryotic phylogeny based on the HSP70 protein family (1999) (27)
- Structural and functional properties of thesaurin a (42Sp50), the major protein of the 42 S particles present in Xenopus laevis previtellogenic oocytes. (1991) (27)
- Mechanistic revisions of phenomenological modeling strategies in molecular evolution. (2010) (27)
- On the conservation of protein sequences in evolution. (2001) (26)
- How color visual pigments are tuned (1999) (26)
- Phylotranscriptomic evidence for pervasive ancient hybridization among Old World salamanders. (2020) (22)
- Molecular evidence that the proliferative kidney disease organism unknown (PKX) is a myxosporean. (1999) (21)
- Broccoli: combining phylogenetic and network analyses for orthology assignment. (2020) (21)
- Four mismatch repair paralogues coexist in (1999) (20)
- Broccoli: combining phylogenetic and network analyses for orthology assignment (2019) (19)
- Reply to Halanych et al.: Ctenophore misplacement is corroborated by independent datasets (2016) (18)
- A dirichlet process covarion mixture model and its assessments using posterior predictive discrepancy tests. (2010) (18)
- Coalescing molecular evolution and DNA barcoding (2016) (18)
- Exploring fast computational strategies for probabilistic phylogenetic analysis. (2007) (16)
- Origin of replication of Thermotoga maritima. (2000) (15)
- Molecular phylogeny of kinetoplastids. (1998) (15)
- New Efficient Algorithm for Modeling Partial and Complete Gene Transfer Scenarios (2006) (13)
- Overview of the First Phylogenomics Conference (2007) (12)
- Multiple Factors Confounding Phylogenetic Detection of Selection on Codon Usage (2018) (11)
- The Classification of Bioamine Receptors (1997) (11)
- Less is more: decreasing the number of scientific conferences to promote economic degrowth. (2008) (10)
- Bioamine receptors: evolutionary and functional variations of a structural leitmotiv. (1993) (10)
- High‐elevation hypoxia impacts perinatal physiology and performance in a potential montane colonizer (2020) (9)
- Pitfalls in Tree Reconstruction and the Phylogeny of Eukaryotes (2004) (7)
- Decontamination, pooling and dereplication of the 678 samples of the Marine Microbial Eukaryote Transcriptome Sequencing Project (2021) (7)
- Plastic cell morphology changes during dispersal (2021) (6)
- Analysis of variability among endogenous ecotropic MuLV loci in laboratory mice. (1993) (5)
- Lower Statistical Support with Larger Data Sets: Insights from the Ochrophyta Radiation (2021) (5)
- Transgenerational dispersal plasticity and its fitness consequences are under genetic control (2019) (5)
- Current Approaches to Phylogenomic Reconstruction (2010) (5)
- The gene encoding the nucleocapsid protein: sequence analysis in murine hepatitis virus type 3 and evolution inCoronaviridae (1993) (4)
- Conditional Approximate Bayesian Computation: A New Approach for Across-Site Dependency in High-Dimensional Mutation–Selection Models (2018) (4)
- Broadly sampled orthologous groups of eukaryotic proteins for the phylogenetic study of plastid-bearing lineages (2021) (4)
- [Molecular dating in the genomic era]. (2006) (4)
- [Vertebrate origins: does the tunic make the man?]. (2006) (4)
- Phenotypic plasticity through disposable genetic adaptation in ciliates. (2021) (3)
- The phylogenetic position ofDimastigella trypaniformis within the parasitic kinetoplastids (2004) (3)
- A phylogenomic framework and timescale for comparative genomics and evolutionary developmental biology of tunicates (2017) (2)
- High temperatures limit developmental resilience to high-elevation hypoxia in the snake Natrix maura (Squamata: Colubridae) (2020) (2)
- Western prosperity is based on resources that are running out (2009) (1)
- Cnidarian phylogenetic relationships as revealed by mitogenomics (2013) (1)
- The Universal Tree of Life: From Simple to Complex or From Complex to Simple (2005) (1)
- State-of the art methodologies dictate new standards for phylogenetic analysis (2013) (1)
- Phylotranscriptomic consolidation of the jawed vertebrate timetree (2017) (0)
- A software tool ‘CroCo’ detects pervasive cross-species contamination in next generation sequencing data (2018) (0)
- 164-single-gene-before-SCaFoS (2015) (0)
- A Large and Consistent Ph ylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals Highlights (2019) (0)
- Phylogenomics: how far back in the past can we go? (2007) (0)
- A Phylogenomic analysis of the origin of plastids (2014) (0)
- Animals and Fungi : Common Origin , but Independent Approaches to Multicellularity (2006) (0)
- Optimizing statistical potentials by a combination of a gradient method and Gibbs sampling (2005) (0)
- The animal phylogeny and the fundamental importance of taxon sampling (2006) (0)
- A new approach to process and phylogenetically analyze sequences from public databases , applied to infer the phylogeny of Hymenoptera (2011) (0)
- An Evaluation of Elongation Factor 1 (cid:97) as a Phylogenetic Marker for Eukaryotes (0)
- Broadly sampled orthologous groups of eukaryotic proteins for the phylogenetic study of plastid-bearing lineages (2021) (0)
- Louis Aragon, “Les Yeux d‚Elsa“ (2015) (0)
- Thematic Semester on Biodiversity and Evolution in the Context of MPE 2013 (0)
- Decontamination, pooling and dereplication of the 678 samples of the Marine Microbial Eukaryote Transcriptome Sequencing Project (2021) (0)
- Cover image of Systematic Biology ( March 2010 ) (2010) (0)
- A phylogenomic framework and timescale for comparative studies of tunicates (2018) (0)
- More than one way to make a worm (2006) (0)
- Evaluating the usefulness of alignment filtering methods to reduce the impact of errors on evolutionary inferences (2019) (0)
- Animal evolution — A fully-resolved phylogenomic tree argues against the Cambrian explosion hypothesis (2006) (0)
- Not only better sampling, but also better modelling (2013) (0)
- A phylogenomic falsification of the chromalveolate hypothesis (2010) (0)
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What Schools Are Affiliated With Hervé Philippe?
Hervé Philippe is affiliated with the following schools:
